The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-CM_2_L21_T3.seq Fgr-CM_2_L21_T3 LENGTH:508bp ;
DIRECTION:5 ; CLONE:Fgr-CM_2_L21 ; CLONELIB: n/a
(508 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
980,100 sequences; 307,974,620 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_594648.1| (NC_003424) hypothetical protein [Schizosa... 130 8e-30
ref|NP_561342.1| (NC_003366) conserved hypothetical protein... 72 3e-12
gb|AAM42165.1| (AE012403) conserved hypothetical protein [X... 69 2e-11
gb|AAM37927.1| (AE011951) conserved hypothetical protein [X... 67 8e-11
ref|NP_298133.1| (NC_002488) conserved hypothetical protein... 67 1e-10
ref|NP_241656.1| (NC_002570) BH0790~unknown conserved prote... 65 4e-10
ref|NP_471455.1| (NC_003212) similar to unknown proteins [L... 63 2e-09
ref|NP_607666.1| (NC_003485) conserved hypothetical protein... 62 3e-09
ref|NP_465537.1| (NC_003210) similar to unknown proteins [L... 61 5e-09
ref|NP_269659.1| (NC_002737) conserved hypothetical protein... 61 6e-09
ref|NP_346561.1| (NC_003028) conserved hypothetical protein... 56 1e-07
ref|NP_359543.1| (NC_003098) Conserved hypothetical protein... 56 2e-07
ref|NP_267655.1| (NC_002662) conserved hypothetical protein... 55 2e-07
ref|NP_470101.1| (NC_003212) lin0759 [Listeria innocua] >gi... 54 9e-07
ref|NP_464292.1| (NC_003210) lmo0765 [Listeria monocytogene... 52 4e-06
pir||T37125 hypothetical protein SCJ4.42c - Streptomyces co... 51 6e-06
ref|XP_067319.2| (XM_067319) similar to data source:SPTR, s... 39 0.032
ref|NP_563930.1| (NM_101234) ubiquitin, putative [Arabidops... 32 2.3
gb|AAF81291.1|AC027656_8 (AC027656) Strong similarity to an... 32 2.3
ref|NP_056589.1| (NM_015774) ERO1-like (S. cerevisiae) [Mus... 32 3.9
gb|AAL96669.1|AF489855_1 (AF489855) endoplasmic oxidoreduct... 32 3.9
gb|AAH25102.1| (BC025102) ERO1-like (S. cerevisiae) [Mus mu... 32 3.9
ref|NP_612537.1| (NM_138528) ERO1-like (S. cerevisiae) [Rat... 32 3.9
ref|NP_055399.1| (NM_014584) ERO1-like (S. cerevisiae); ERO... 32 3.9
gb|AAH08674.1|AAH08674 (BC008674) ERO1 (S. cerevisiae)-like... 32 3.9
ref|XP_085779.1| (XM_085779) similar to TERA protein [Homo ... 32 3.9
ref|XP_006937.4| (XM_006937) similar to TERA protein [Homo ... 32 3.9
pir||T10060 receptor-like protein kinase (EC 2.7.1.-) precu... 32 3.9
ref|NP_443672.1| (NC_003194) NADH dehydrogenase subunit 2 [... 31 5.0
sp|Q39002|TLC1_ARATH CHLOROPLAST ADP,ATP CARRIER PROTEIN 1 ... 31 6.6
ref|NP_560836.1| (NC_003364) sun family protein [Pyrobaculu... 31 6.6
emb|CAA89201.2| (Z49227) adenine nucleotide translocase [Ar... 31 6.6
dbj|BAB19287.1| (AB035227) NADH dehydrogenase subunit 2 [He... 31 6.6
ref|NP_073639.1| (NC_002646) NADH dehydrogenase subunit 2 [... 31 6.6
ref|XP_115911.1| (XM_115911) similar to aristaless-related ... 30 8.6
ref|NP_573251.1| (NM_133023) CG7846 gene product [Drosophil... 30 8.6
ref|NP_295302.1| (NC_001263) conserved hypothetical protein... 30 8.6
>ref|NP_594648.1| (NC_003424) hypothetical protein [Schizosaccharomyces pombe]
sp|Q10449|YDEG_SCHPO Hypothetical protein C12B10.16c in chromosome I
pir||T37583 hypothetical protein SPAC12B10.16c - fission yeast
(Schizosaccharomyces pombe)
emb|CAA94706.1| (Z70721) hypothetical protein [Schizosaccharomyces pombe]
Length = 509
Score = 130 bits (326), Expect = 8e-30
Identities = 74/166 (44%), Positives = 92/166 (54%)
Frame = +2
Query: 5 DLYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXXX 184
DL RLF N PNTLDTT+ W + N + + TGDI A W RDSANQL Y
Sbjct: 79 DLARLFENCMPNTLDTTIRWHAADSHNPQ---TLVITGDIPAEWIRDSANQLLPYLPLAK 135
Query: 185 XXXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFVF 364
GAI QA L + P+CNAF PP ++ L D V+P YDP VF
Sbjct: 136 SDSPLATLILGAIQTQAEMLIQFPYCNAFQPPKQSFLSGNDN--GQSDRVTPAYDPAVVF 193
Query: 365 ECKYELDTLAAFLQLSWDYYEETEDGEFFGKFGWVEAVRKILXVAE 502
ECKYELD+LA+FL+LS+ Y+ T+D F W+ AV +I+ V E
Sbjct: 194 ECKYELDSLASFLKLSYTYWLYTKDQSIF-TVKWLAAVERIIQVLE 238
>ref|NP_561342.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80132.1| (AP003186) conserved hypothetical protein [Clostridium perfringens]
Length = 427
Score = 71.6 bits (174), Expect = 3e-12
Identities = 51/148 (34%), Positives = 70/148 (46%)
Frame = +2
Query: 8 LYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXXXX 187
L LF N + NT+DTTV E AF+ TGDI A W RDS +Q++ Y
Sbjct: 28 LQELFYNCFINTMDTTV--------EVSEGDAFVITGDIPAMWLRDSTSQVEHYLPFVKE 79
Query: 188 XXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFVFE 367
F G IN Q + + P+ NAF+ P Q D K P +V+E
Sbjct: 80 YPELKAIFTGLINRQVKCIFIDPYANAFNKEPNG---------QKWDNDITKDSP-WVWE 129
Query: 368 CKYELDTLAAFLQLSWDYYEETEDGEFF 451
KYE+D+L ++L Y++E+ D FF
Sbjct: 130 RKYEIDSLCYPVRLIHKYWKESGDETFF 157
>gb|AAM42165.1| (AE012403) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 505
Score = 69.3 bits (168), Expect = 2e-11
Identities = 52/163 (31%), Positives = 78/163 (46%)
Frame = +2
Query: 2 PDLYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXX 181
P+L LF N +PNTLDTTV N + + F+ TGDI+A W RDS+ Q+ Y
Sbjct: 91 PELAWLFENCYPNTLDTTVE---TGTRNGKPD-TFVITGDIHAMWLRDSSAQVHPYVPLA 146
Query: 182 XXXXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFV 361
F G I QA + P+ NAF P+ +R K + + P V
Sbjct: 147 KRDPALRRMFHGLIQRQAACIKLDPYANAF--LPDGQTQRLKWSLNDITEMKPG-----V 199
Query: 362 FECKYELDTLAAFLQLSWDYYEETEDGEFFGKFGWVEAVRKIL 490
E K+E+D+L ++++ +Y+ T D F W EA+ ++
Sbjct: 200 GERKWEIDSLCYPIRIAHEYWRATGDTAPFDD-DWREAMHVVV 241
>gb|AAM37927.1| (AE011951) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 487
Score = 67.0 bits (162), Expect = 8e-11
Identities = 48/150 (32%), Positives = 71/150 (47%)
Frame = +2
Query: 2 PDLYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXX 181
P+L LF N +PNTLDTTV + + F+ TGDI+A W RDS+ Q+ Y
Sbjct: 73 PELAWLFENCYPNTLDTTVE----TGTRDGKPDTFVITGDIHAMWLRDSSAQVHPYVPLA 128
Query: 182 XXXXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFV 361
F G I QA + P+ NAF P+ +R K + + P V
Sbjct: 129 RRDPALRRMFHGLIQRQAACIALDPYANAF--LPDGQTQRLKWSLNDITEMKPG-----V 181
Query: 362 FECKYELDTLAAFLQLSWDYYEETEDGEFF 451
E K+E+D+L ++++ +Y+ T D F
Sbjct: 182 GERKWEVDSLCYPIRIAHEYWRATGDAAPF 211
>ref|NP_298133.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||H82756 conserved hypothetical protein XF0843 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83653.1|AE003923_11 (AE003923) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 516
Score = 66.6 bits (161), Expect = 1e-10
Identities = 53/163 (32%), Positives = 77/163 (46%)
Frame = +2
Query: 2 PDLYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXX 181
P+L LF N +PNTLDTTV N + + FI TGDI A W RDSA Q+Q+Y
Sbjct: 94 PELAWLFENCYPNTLDTTV---STGTRNGKPD-TFIITGDIQALWLRDSAAQVQAYVPLA 149
Query: 182 XXXXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFV 361
F G I A + P+ NAF P+ K V + P +
Sbjct: 150 RHDPALRRLFHGLIQRHAACIRLDPYANAF--LPDGVSHPLKWSVNDVTQMQPG-----I 202
Query: 362 FECKYELDTLAAFLQLSWDYYEETEDGEFFGKFGWVEAVRKIL 490
E K+E+D+L ++L+ Y+ ++D F + W +A+ +L
Sbjct: 203 GERKWEIDSLCYPIRLAHAYWRASDDIAPFDE-DWRQAMHIVL 244
>ref|NP_241656.1| (NC_002570) BH0790~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB04509.1| (AP001509) BH0790~unknown conserved protein in others [Bacillus
halodurans]
Length = 454
Score = 64.7 bits (156), Expect = 4e-10
Identities = 46/145 (31%), Positives = 68/145 (46%)
Frame = +2
Query: 5 DLYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXXX 184
+L LF + NT TT+ +E+ F+ TGDI A W RDS+ Q++ Y
Sbjct: 26 ELQTLFEQCFLNTYLTTI--------QEDEQGTFVVTGDIPAMWLRDSSAQVRPYLTVVK 77
Query: 185 XXXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFVF 364
+G I Q RY+ P+ NAF+ + Q R +SP V+
Sbjct: 78 EDADMARMIKGVIERQWRYILHDPYANAFNQTANKQGHQ-----QDRTEMSP-----LVW 127
Query: 365 ECKYELDTLAAFLQLSWDYYEETED 439
E KYELD+L +QL++ Y++ T D
Sbjct: 128 ERKYELDSLCYPIQLAYLYWKATGD 152
>ref|NP_471455.1| (NC_003212) similar to unknown proteins [Listeria innocua]
emb|CAC97351.1| (AL596171) similar to unknown proteins [Listeria innocua]
Length = 434
Score = 62.8 bits (151), Expect = 2e-09
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 2/165 (1%)
Frame = +2
Query: 8 LYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXXXX 187
L+R+F + NT TT+ EE L F+ TGDI A W RDS +Q++ Y
Sbjct: 26 LHRMFEKCFTNTYTTTL-------QETEEGLPFVITGDIPAMWLRDSTSQIRPYLIVAEE 78
Query: 188 XXXXXXXFRGAINLQARYLTKAPFCNAFHPPPE-ANLRRTKRLVQPRDTVSPKYDPNFVF 364
+ LQ +Y+ P+ NAF+ A ++ K + + V+
Sbjct: 79 DEEMATLIENLVKLQTKYILHDPYANAFNKTANGAGFQQDKTEMS-----------DLVW 127
Query: 365 ECKYELDTLAAFLQLSWDYYEET-EDGEFFGKFGWVEAVRKILXV 496
E KYE+D+L +QL++ ++ T G F +F +A+ +I+ V
Sbjct: 128 ERKYEIDSLCYPVQLAYLLWKSTNHTGHFTEEFR--QALHQIIDV 170
>ref|NP_607666.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL98165.1| (AE010073) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 437
Score = 61.6 bits (148), Expect = 3e-09
Identities = 46/150 (30%), Positives = 71/150 (46%)
Frame = +2
Query: 2 PDLYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXX 181
PD F ++ NTL+TT+ E+ +F+ TGDI A W RDS Q++ Y
Sbjct: 34 PDWALNFKTSFTNTLETTLK-------TYEDGTSFLLTGDIPAMWLRDSTAQMKPYLFLA 86
Query: 182 XXXXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFV 361
G + Q RY+ P+ NAF+ EAN + T + +P ++
Sbjct: 87 KEDEEIRKIIAGLVKRQFRYICIDPYANAFN--EEAN-------EKGHQTDHTQMNP-WI 136
Query: 362 FECKYELDTLAAFLQLSWDYYEETEDGEFF 451
+E KYE+D+L +QL++ Y ET + F
Sbjct: 137 WERKYEIDSLCYPIQLAYLLYRETGSTDQF 166
>ref|NP_465537.1| (NC_003210) similar to unknown proteins [Listeria monocytogenes
EGD-e]
emb|CAD00091.1| (AL591981) similar to unknown proteins [Listeria monocytogenes]
Length = 434
Score = 61.2 bits (147), Expect = 5e-09
Identities = 47/165 (28%), Positives = 75/165 (44%), Gaps = 2/165 (1%)
Frame = +2
Query: 8 LYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXXXX 187
L+R+F + NT TT+ EE L F+ TGDI A W RDS +Q++ Y
Sbjct: 26 LHRMFEKCFTNTYTTTL-------QETEEGLPFVITGDIPAMWLRDSTSQIRPYLIVAEE 78
Query: 188 XXXXXXXFRGAINLQARYLTKAPFCNAFHPPPE-ANLRRTKRLVQPRDTVSPKYDPNFVF 364
+ LQ + + P+ NAF+ A + K + N V+
Sbjct: 79 DEEMATVIENLVKLQTKCILHDPYANAFNKSANGAGFQNDKTAM-----------TNLVW 127
Query: 365 ECKYELDTLAAFLQLSWDYYEET-EDGEFFGKFGWVEAVRKILXV 496
E KYE+D+L +QL++ ++ T G F +F +A+ +I+ V
Sbjct: 128 ERKYEIDSLCYPIQLAYLLWKSTNRTGHFTEEFR--KALHQIIEV 170
>ref|NP_269659.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34380.1| (AE006591) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 437
Score = 60.8 bits (146), Expect = 6e-09
Identities = 46/150 (30%), Positives = 70/150 (46%)
Frame = +2
Query: 2 PDLYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXX 181
PD F ++ NTL+TT+ E+ +F+ TGDI A W RDS Q++ Y
Sbjct: 34 PDWALNFKTSFTNTLETTLK-------TYEDGTSFLLTGDIPAMWLRDSTAQMKPYLFLA 86
Query: 182 XXXXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFV 361
G + Q RY+ P+ NAF+ EAN + T + +P ++
Sbjct: 87 KEDEEIRKIIAGLVKRQFRYICIDPYANAFN--EEAN-------EKGHQTDHTQMNP-WI 136
Query: 362 FECKYELDTLAAFLQLSWDYYEETEDGEFF 451
+E KYE+D L +QL++ Y ET + F
Sbjct: 137 WERKYEIDCLCYPIQLAYLLYRETGSTDQF 166
>ref|NP_346561.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK76201.1| (AE007503) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 426
Score = 56.2 bits (134), Expect = 1e-07
Identities = 45/163 (27%), Positives = 73/163 (44%)
Frame = +2
Query: 2 PDLYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXX 181
P+ +F + +TLD TV + E+ F+ TGDI A W RDS QL+ Y
Sbjct: 23 PEWVDVFERCYTDTLDNTV-------EILEDGSTFVLTGDIPAMWLRDSTAQLRPYLHVA 75
Query: 182 XXXXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFV 361
G + Q + K P+ N+F N+ + D ++
Sbjct: 76 KRDALLRQTIAGLVKRQMTLVLKDPYANSF------NIEENWKGHHETDHTDLN---GWI 126
Query: 362 FECKYELDTLAAFLQLSWDYYEETEDGEFFGKFGWVEAVRKIL 490
+E KYE+D+L LQL++ ++ET + F + +V A ++IL
Sbjct: 127 WERKYEVDSLCYPLQLAYLLWKETGETSQFDEI-FVAATKEIL 168
>ref|NP_359543.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAL00754.1| (AE008559) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 434
Score = 55.8 bits (133), Expect = 2e-07
Identities = 45/163 (27%), Positives = 74/163 (44%)
Frame = +2
Query: 2 PDLYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXX 181
P+ +F + + +TLD TV + E+ F+ TGDI A W RDS QL+ Y
Sbjct: 31 PEWVDVFEHCYTDTLDNTV-------EILEDGSTFVLTGDIPAMWLRDSTAQLRPYLHVA 83
Query: 182 XXXXXXXXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFV 361
G + Q + K P+ N+F N+ + D ++
Sbjct: 84 KRDALLRQTIAGLVKRQMTLVLKDPYANSF------NIEENWKGHHETDHTDLN---GWI 134
Query: 362 FECKYELDTLAAFLQLSWDYYEETEDGEFFGKFGWVEAVRKIL 490
+E KYE+D+L LQL++ ++ET + F + +V A ++IL
Sbjct: 135 WERKYEVDSLCYPLQLAYLLWKETGETSQFDE-TFVAATKEIL 176
>ref|NP_267655.1| (NC_002662) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
gb|AAK05597.1|AE006380_5 (AE006380) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
Length = 431
Score = 55.5 bits (132), Expect = 2e-07
Identities = 42/159 (26%), Positives = 73/159 (45%)
Frame = +2
Query: 20 FLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXXXXXXXX 199
F +++ NTL+TT+ ++ F+ TGDI A W RDS Q++ Y
Sbjct: 31 FNHSFSNTLETTLRVH-------DDRTTFLLTGDIPAMWLRDSTAQMRPYLVLAREDEEI 83
Query: 200 XXXFRGAINLQARYLTKAPFCNAFHPPPEANLRRTKRLVQPRDTVSPKYDPNFVFECKYE 379
G + Q Y+ P+ NAF+ +T D + +++E KYE
Sbjct: 84 RDLIVGLVKKQMIYINLDPYANAFNESENFAGHQT-------DHTNFNEHKGWIWERKYE 136
Query: 380 LDTLAAFLQLSWDYYEETEDGEFFGKFGWVEAVRKILXV 496
+D+L +QL++ Y+ T + F + +++AV+ L V
Sbjct: 137 IDSLCYPIQLAYLVYKNTGYTKHFDE-EFIKAVKNTLNV 174
>ref|NP_470101.1| (NC_003212) lin0759 [Listeria innocua]
emb|CAC95991.1| (AL596166) lin0759 [Listeria innocua]
Length = 432
Score = 53.5 bits (127), Expect = 9e-07
Identities = 44/139 (31%), Positives = 62/139 (43%), Gaps = 1/139 (0%)
Frame = +2
Query: 38 NTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXXXXXXXXXXXFRG 217
NTLDTT+ R E L FI TGDI A W RDS Q++ + G
Sbjct: 35 NTLDTTIKIR-------ENGLTFILTGDIPAMWLRDSVCQVRPFLLFAKENEEIESMLIG 87
Query: 218 AINLQARYLTKAPFCNAFHPPPE-ANLRRTKRLVQPRDTVSPKYDPNFVFECKYELDTLA 394
Q R + P+ NAF+ P A + K + P+ V+E KYE+D+L
Sbjct: 88 LSKEQVRLVGIDPYANAFNETPNGAGHQADKTEMHPQ-----------VWERKYEIDSLC 136
Query: 395 AFLQLSWDYYEETEDGEFF 451
+QL++ ++ T E F
Sbjct: 137 YPIQLAYFIWKITGRTEQF 155
>ref|NP_464292.1| (NC_003210) lmo0765 [Listeria monocytogenes EGD-e]
emb|CAC98843.1| (AL591976) lmo0765 [Listeria monocytogenes]
Length = 432
Score = 51.6 bits (122), Expect = 4e-06
Identities = 46/154 (29%), Positives = 64/154 (40%), Gaps = 6/154 (3%)
Frame = +2
Query: 8 LYRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDINACWGRDSANQLQSYKXXXXX 187
L ++ NTLDTT+ R + L FI TGDI A W RDS Q++ +
Sbjct: 25 LVEMYKRCMENTLDTTIKIR-------DSGLTFILTGDIPAMWLRDSVCQVRPFLIFAKE 77
Query: 188 XXXXXXXFRGAINLQARYLTKAPFCNAFHPPPE-ANLRRTKRLVQPRDTVSPKYDPNFVF 364
G Q + P+ NAF+ P A + K + P+ V+
Sbjct: 78 NEEIESMLIGLSKEQVSLVEIDPYANAFNETPNGAGHQADKTEMHPQ-----------VW 126
Query: 365 ECKYELDTLAAFLQLS---WDYYEETE--DGEFF 451
E KYE+D+L +QL+ W TE D FF
Sbjct: 127 ERKYEIDSLCYPIQLAYLIWKITGRTEQFDAAFF 160
>pir||T37125 hypothetical protein SCJ4.42c - Streptomyces coelicolor
emb|CAB52976.1| (AL109950) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 434
Score = 50.8 bits (120), Expect = 6e-06
Identities = 35/111 (31%), Positives = 50/111 (44%)
Frame = +2
Query: 101 AFITTGDINACWGRDSANQLQSYKXXXXXXXXXXXXFRGAINLQARYLTKAPFCNAFHPP 280
AF+ TGDI A W RDS+ Q+ Y + Q + + P+ NAF+
Sbjct: 52 AFVVTGDIPAMWLRDSSTQMMPYLALLKDDTALQHLLLAVLRRQFQQIAHDPYANAFNAE 111
Query: 281 PEANLRRTKRLVQPRDTVSPKYDPNFVFECKYELDTLAAFLQLSWDYYEET 433
P R P D DP +V+E KYE+D+LA L L+ ++ T
Sbjct: 112 PSG------RAHDPEDLCG---DP-WVWEQKYEVDSLAFPLLLAHRFWAAT 152
>ref|XP_067319.2| (XM_067319) similar to data source:SPTR, source key:Q64526,
evidence:ISS~putative~similar to ULTRA-HIGH SULPHUR
KERATIN [Homo sapiens]
Length = 224
Score = 38.5 bits (88), Expect = 0.032
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Frame = +3
Query: 108 SLQATSMRAGDVIVQTSCSHTNLFCPPPTISLLCSVVQSIFKPDTSQKHLSATHSIPHPK 287
S T + I+ SC+ T L C P T+S CSV+Q P T + + T HP
Sbjct: 58 SYTVTQLPCHPPILSPSCTVTQLCCQPATLSPSCSVIQLHCHPATVSRSCTVTQLCCHPA 117
Query: 288 ----------------------PTYAGQSDWCSLEILSAQNTIPTL 359
P+Y WC L LS ++ L
Sbjct: 118 ALLPSSTVNTVTQLHCHPAALLPSYTVTQLWCHLAALSPSCSVTQL 163
>ref|NP_563930.1| (NM_101234) ubiquitin, putative [Arabidopsis thaliana]
gb|AAL31202.1| (AY060574) At1g13640/F21F23_7 [Arabidopsis thaliana]
Length = 622
Score = 32.3 bits (72), Expect = 2.3
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 305 KRLVQPRDTVSPKYDPNFVFECKYELDTLAAFLQLSWDYYEETEDGEFFGK 457
KRL +D +SPK D E ++++D + +L Y ETE EFF K
Sbjct: 448 KRLTTEQDVLSPKSDGEGETEFQFDID----YNELDSVYGSETETDEFFAK 494
>gb|AAF81291.1|AC027656_8 (AC027656) Strong similarity to an unknown protein At2g03890
gi|4582436 from Arabidopsis thaliana BAC T18C20
gb|AC007196. ESTs gb|AI993825, gb|T13863, gb|N65091,
gb|AI998990, gb|W43493 and gb|AA585974 come from this
gene
Length = 620
Score = 32.3 bits (72), Expect = 2.3
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 305 KRLVQPRDTVSPKYDPNFVFECKYELDTLAAFLQLSWDYYEETEDGEFFGK 457
KRL +D +SPK D E ++++D + +L Y ETE EFF K
Sbjct: 446 KRLTTEQDVLSPKSDGEGETEFQFDID----YNELDSVYGSETETDEFFAK 492
>ref|NP_056589.1| (NM_015774) ERO1-like (S. cerevisiae) [Mus musculus]
ref|XP_122699.1| (XM_122699) ERO1-like [Mus musculus]
gb|AAF20364.1|AF144695_1 (AF144695) ERO1L [Mus musculus]
Length = 464
Score = 31.6 bits (70), Expect = 3.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 271 ECVAERCFCEVSGLKIDCTTE 209
E A+RCFC+VSG DCT +
Sbjct: 29 ETAAQRCFCQVSGYLDDCTCD 49
>gb|AAL96669.1|AF489855_1 (AF489855) endoplasmic oxidoreductase 1 [Rattus norvegicus]
Length = 464
Score = 31.6 bits (70), Expect = 3.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 271 ECVAERCFCEVSGLKIDCTTE 209
E A+RCFC+VSG DCT +
Sbjct: 29 ETAAQRCFCQVSGYLDDCTCD 49
>gb|AAH25102.1| (BC025102) ERO1-like (S. cerevisiae) [Mus musculus]
Length = 464
Score = 31.6 bits (70), Expect = 3.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 271 ECVAERCFCEVSGLKIDCTTE 209
E A+RCFC+VSG DCT +
Sbjct: 29 ETAAQRCFCQVSGYLDDCTCD 49
>ref|NP_612537.1| (NM_138528) ERO1-like (S. cerevisiae) [Rattus norvegicus]
gb|AAL61547.1| (AY071924) oxidoreductase ERO1-L [Rattus norvegicus]
Length = 464
Score = 31.6 bits (70), Expect = 3.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 271 ECVAERCFCEVSGLKIDCTTE 209
E A+RCFC+VSG DCT +
Sbjct: 29 ETAAQRCFCQVSGYLDDCTCD 49
>ref|NP_055399.1| (NM_014584) ERO1-like (S. cerevisiae); ERO1 (S. cerevisiae)-like
[Homo sapiens]
gb|AAF35260.1|AF081886_1 (AF081886) ERO1-like protein [Homo sapiens]
gb|AAH12941.1|AAH12941 (BC012941) Similar to ERO1 (S. cerevisiae)-like [Homo sapiens]
Length = 468
Score = 31.6 bits (70), Expect = 3.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 271 ECVAERCFCEVSGLKIDCTTE 209
E A+RCFC+VSG DCT +
Sbjct: 29 ETAAQRCFCQVSGYLDDCTCD 49
>gb|AAH08674.1|AAH08674 (BC008674) ERO1 (S. cerevisiae)-like [Homo sapiens]
Length = 468
Score = 31.6 bits (70), Expect = 3.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 271 ECVAERCFCEVSGLKIDCTTE 209
E A+RCFC+VSG DCT +
Sbjct: 29 ETAAQRCFCQVSGYLDDCTCD 49
>ref|XP_085779.1| (XM_085779) similar to TERA protein [Homo sapiens]
Length = 108
Score = 31.6 bits (70), Expect = 3.9
Identities = 18/52 (34%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Frame = +3
Query: 210 SVVQSIFKPDTSQKHLSATHSIPHPKPTYAGQS-DWCSLEILSAQNTIPTLS 362
S +Q FK S H + + + P P P Y+ QS D E+ S N P S
Sbjct: 48 SKLQKEFKRHNSDAHNTTSSASPAPSPRYSNQSDDGSDTEMASGSNRTPVFS 99
>ref|XP_006937.4| (XM_006937) similar to TERA protein [Homo sapiens]
Length = 160
Score = 31.6 bits (70), Expect = 3.9
Identities = 18/52 (34%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Frame = +3
Query: 210 SVVQSIFKPDTSQKHLSATHSIPHPKPTYAGQS-DWCSLEILSAQNTIPTLS 362
S +Q FK S H + + + P P P Y+ QS D E+ S N P S
Sbjct: 48 SKLQKEFKRHNSDAHNTTSSASPAPSPRYSNQSDDGSDTEMASGSNRTPVFS 99
>pir||T10060 receptor-like protein kinase (EC 2.7.1.-) precursor - Madagascar
periwinkle
emb|CAA97692.1| (Z73295) receptor-like protein kinase [Catharanthus roseus]
Length = 803
Score = 31.6 bits (70), Expect = 3.9
Identities = 15/46 (32%), Positives = 26/46 (55%)
Frame = -2
Query: 384 SSSYLHSKTKLGSYFGLTVSRGCTNRFVRRKLASGGGWNALQKGAF 247
S+S + S++K+G F L V + T+ F ++ GG+ + KG F
Sbjct: 445 SNSSIFSRSKIGYRFPLAVVQEATDNFSENRVIGIGGFGKVYKGVF 490
>ref|NP_443672.1| (NC_003194) NADH dehydrogenase subunit 2 [Dactyloptena peterseni]
dbj|BAB70392.1| (AP002947) NADH dehydrogenase subunit 2 [Dactyloptena peterseni]
Length = 348
Score = 31.2 bits (69), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 11 YRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITTGDI 124
Y + L T PN + T PWR ++++ LAF TTG +
Sbjct: 297 YAMTLTTSPNNISGTTPWR-LTSNQTTLPLAFSTTGTL 333
>sp|Q39002|TLC1_ARATH CHLOROPLAST ADP,ATP CARRIER PROTEIN 1 (ADP/ATP TRANSLOCASE 1)
(ADENINE NUCLEOTIDE TRANSLOCASE 1)
pir||S68205 ATP/ADP translocase AATP1 precursor - Arabidopsis thaliana
Length = 589
Score = 30.8 bits (68), Expect = 6.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 440 RLPFLRSSPMIAGERRRGCPARTCIRR 360
R P R +P RRRGC R+C+RR
Sbjct: 66 RFPTKREAPSSYARRRRGCWRRSCLRR 92
>ref|NP_560836.1| (NC_003364) sun family protein [Pyrobaculum aerophilum]
gb|AAL65018.1| (AE009939) sun family protein [Pyrobaculum aerophilum]
Length = 414
Score = 30.8 bits (68), Expect = 6.6
Identities = 26/94 (27%), Positives = 44/94 (46%)
Frame = -2
Query: 309 RFVRRKLASGGGWNALQKGAFVRYRA*RLIAPRNREAISSEEDRIDLYDCNWFALSRPQH 130
+F KL A+ K F+ YRA L+ N++ ++ + R+ AL+RP+
Sbjct: 61 KFAASKLFGSSAMKAVAKAWFI-YRADALLY--NKDLVTRYKKRLLKR-----ALARPEE 112
Query: 129 ALMSPVVINANSSSALSAETPLHGTVVSKVLGHV 28
AL + N+ LS + H +VS +L H+
Sbjct: 113 ALEQLEGLRDNAVEYLSVKYSYHPKIVSTLLSHL 146
>emb|CAA89201.2| (Z49227) adenine nucleotide translocase [Arabidopsis thaliana]
Length = 623
Score = 30.8 bits (68), Expect = 6.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 440 RLPFLRSSPMIAGERRRGCPARTCIRR 360
R P R +P RRRGC R+C+RR
Sbjct: 66 RFPTKREAPSSYARRRRGCWRRSCLRR 92
>dbj|BAB19287.1| (AB035227) NADH dehydrogenase subunit 2 [Heterotis niloticus]
Length = 348
Score = 30.8 bits (68), Expect = 6.6
Identities = 15/35 (42%), Positives = 18/35 (50%)
Frame = +2
Query: 11 YRLFLNTWPNTLDTTVPWRGVSADNAEEELAFITT 115
Y L T+PNT +TT PWR + N ITT
Sbjct: 298 YTTALTTFPNTNNTTTPWRFKNNQNTSPLTITITT 332
>ref|NP_073639.1| (NC_002646) NADH dehydrogenase subunit 2 [Coregonus lavaretus]
dbj|BAB20708.1| (AB034824) NADH dehydrogenase subunit 2 [Coregonus lavaretus]
Length = 349
Score = 30.8 bits (68), Expect = 6.6
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = +2
Query: 11 YRLFLNTWPNTLDTTVPWR 67
Y + L WPNTL T PWR
Sbjct: 298 YAMTLTIWPNTLAATTPWR 316
>ref|XP_115911.1| (XM_115911) similar to aristaless-related homeobox protein ARX
[Homo sapiens]
Length = 456
Score = 30.4 bits (67), Expect = 8.6
Identities = 18/65 (27%), Positives = 29/65 (43%)
Frame = +1
Query: 262 QRIPSPTRSQLTPDKAIGAASRYCQPKIRSQLCLRMQVRAGHPRRLSPAIMXXXXXXXXX 441
Q +P+P S+ P+KA+ A + P + + L L ++ RA PRR A
Sbjct: 48 QSLPAPLTSRADPEKAVQAVAFRAAPLLPT-LALMVEQRAEEPRRCPVAATGAVAAAAAA 106
Query: 442 XILWE 456
+ E
Sbjct: 107 AVATE 111
>ref|NP_573251.1| (NM_133023) CG7846 gene product [Drosophila melanogaster]
gb|AAF48774.1| (AE003507) CG7846 gene product [Drosophila melanogaster]
gb|AAK93144.1| (AY051720) LD24980p [Drosophila melanogaster]
Length = 607
Score = 30.4 bits (67), Expect = 8.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 150 ALSRPQHALMSPVVINANSSSALSAETPLHGTVVSKVLGH 31
A RP H + P + N NS+S L E VVS++L H
Sbjct: 70 ASDRPHHDPLLPPLDNVNSNSGLMVEFEEQRLVVSRILQH 109
>ref|NP_295302.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||H75379 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11140.1|AE002001_6 (AE002001) conserved hypothetical protein [Deinococcus radiodurans]
Length = 452
Score = 30.4 bits (67), Expect = 8.6
Identities = 18/59 (30%), Positives = 26/59 (43%)
Frame = +1
Query: 214 WCNQSSSPIPHKSTFLQRIPSPTRSQLTPDKAIGAASRYCQPKIRSQLCLRMQVRAGHP 390
W S +P P + R P P S TPD A + Y + K R L++ ++ G P
Sbjct: 10 WTKTSRAPAPARL----RYPDPMTSSATPDALAQAQAAYAELKARG---LKLNLQRGQP 61
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 24, 2002 7:34 AM
Number of letters in database: 307,974,620
Number of sequences in database: 980,100
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,790,448
Number of Sequences: 980100
Number of extensions: 6453765
Number of successful extensions: 18513
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 17849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18497
length of database: 307,974,620
effective HSP length: 112
effective length of database: 198,203,420
effective search space used: 11099391520
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)