(Linear) MAP of: ./Fgr-Venn_Contig0125.seq check: 8021 from: 1 to: 1005 Contig125 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * January 12, 2002 14:43 .. StuI EcoRI Bpu10I BglI | | | | | TTTNTTTTTTTTTTTNCAACGAAGAATATGGGTTGAATTCATGCCGTTGCTCATCGTGCCTGAGCCCCCAAGGCCTATTGATAACTAATACTAATTTAAC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 AAANAAAAAAAAAAANGTTGCTTCTTATACCCAACTTAAGTACGGCAACGAGTAGCACGGACTCGGGGGTTCCGGATAACTATTGATTATGATTAAATTG a F ? F F F ? T K N M G * I H A V A H R A * A P K A Y * * L I L I * P - b ? F F F ? Q R R I W V E F M P L L I V P E P P R P I D N * Y * F N - c ? F F F ? N E E Y G L N S C R C S S C L S P Q G L L I T N T N L T - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d K ? K K K ? R L I H T S N M G N S M T G S G G L G I S L * Y * N L - e ? K K K ? V F F I P Q I * A T A * R A Q A G L A * Q Y S I S I * - f ? K K K ? L S S Y P N F E H R Q E D H R L G W P R N I V L V L K V - SexAI BbsI | | | CGGATAACACCCGCCGTTCAATCATGTCGTTACTAATCATAATCTACTGTCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GCCTATTGTGGGCGGCAAGTTAGTACAGCAATGATTAGTATTAGATGACAGGTGGTGCTTCTGCTTCCTGGTCCACTTCCCAACTAAGGAAGACCTACAA a D N T R R S I M S L L I I I Y C P P R R R R T R * R V D S F W M L - b R I T P A V Q S C R Y * S * S T V H H E D E G P G E G L I P S G C C - c G * H P P F N H V V T N H N L L S T T K T K D Q V K G * F L L D V - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d R I V G A T * D H R * * D Y D V T W W S S S P G P S P N I G E P H - e G S L V R R E I M D N S I M I * Q G G R L R L V L H L T S E K Q I N - f P Y C G G N L * T T V L * L R S D V V F V F S W T F P Q N R R S T - AceIII BcgI XhoI NgoAIV BcgI BclI | | | | | GTAGTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CATCAGCCTCTCCCAAGCTGGCAGGAGCTCGACGAACGGCCGCTTTTAGTTAGCGACGACTAGTCCTCCCTATGGGAGGAACAGGACCTAGAACCTGAAC a * S E R V R P S S S C L P A K I N R C * S G G I P S L S W I L D L - b S R R G F D R P R A A C R R K S I A A D Q E G Y P P C P G S W T * - c V V G E G S T V L E L L A G E N Q S L L I R R D T L L V L D L G L D - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d Q L R L P N S R G R A A Q R R F D I A A S * S P Y G G Q G P D Q V Q - e Y D S L T R G D E L Q K G A F I L R Q Q D P P I G E K D Q I K S K - f T T P S P E V T R S S S A P S F * D S S I L L S V R R T R S R P S - Tth111I Bce83I EciI | | | ACGTTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCATACCACCACGAAGGCGGAGGACGA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TGCAACAGCTATCACAGCCTACTGAGCTGGAGTTCCCACTACCAGAACGGCCAGTTCCAGAACTGCTTTTAAACGTATGGTGGTGCTTCCGCCTCCTGCT a T L S I V S D D S T S R V M V L P V K V L T K I C I P P R R R R T R - b R C R * C R M T R P Q G * W S C R S R S * R K F A Y H H E G G G R - c V V D S V G * L D L K G D G L A G Q G L D E N L H T T T K A E D E - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R Q R Y H R I V R G * P H H D Q R D L D Q R F N A Y W W S P P P R - e V N D I T D S S E V E L T I T K G T L T K V F I Q M G G R L R L V - f S T T S L T P H S S R L P S P R A P * P R S S F K C V V V F A S S S - AceIII SalI BcgI XhoI NgoAIV BcgI BclI | | | | | | GGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGAT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CCACCTCTCAGCTGAGGAAGACCTACAACATCAGCCTCTCCCACGCCGGTAGGAGCTCGACGAACGGCCGCTTTTAGTTAGCGACGACTAGTCCTCCCTA a W R V D S F W M L * S E R V R P S S S C L P A K I N R C * S G G M - b G G E S T P S G C C S R R G C G H P R A A C R R K S I A A D Q E G C - c V E S R L L L D V V V G E G A A I L E L L A G E N Q S L L I R R D - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d P P S D V G E P H Q L R L P H P W G R A A Q R R F D I A A S * S P - e L H L T S E K Q I N Y D S L T R G D E L Q K G A F I L R Q Q D P P I - f T S L R S R R S T T T P S P A A M R S S S A P S F * D S S I L L S - XhoI | GCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CGGGAGGAACAGGACCTAGAACCTGAAGTGTAACAGCTACCACAGCCTACTGAGCTGGAGCTCCCACTACCAGAACGGACACTCCCAGAACTGCTTCTAA a P S L S W I L D F T L S M V S D D S T S R V M V L P V R V L T K I - b P P C P G S W T S H C R W C R M T R P R G * W S C L * G S * R R F - c A L L V L D L G L H I V D G V G * L D L E G D G L A C E G L D E D L - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d H G G Q G P D Q V E C Q R H H R I V R G R P H H D Q R H P D Q R L N - e G E K D Q I K S K V N D I T D S S E V E L T I T K G T L T K V F I - f A R R T R S R P S * M T S P T P H S S R S P S P R A Q S P R S S S - AceIII BbsI SalI BcgI XhoI NgoAIV | | | | | TGCATACCGCCACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 ACGTATGGCGGTGCTTCTGCCTCCTGCTCCACCTCTCAGCTGAGGAAGACTTACAACATTAGCCTCTCCCACGCCGGTAGGAGCTCGACGAACGGCCGCT a C I P P R R R R T R W R V D S F * M L * S E R V R P S S S C L P A K - b A Y R H E D G G R G G E S T P S E C C N R R G C G H P R A A C R R - c H T A T K T E D E V E S R L L L N V V I G E G A A I L E L L A G E - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d A Y R W S S P P R P P S D V G E S H Q L R L P H P W G R A A Q R R - e Q M G G R L R L V L H L T S E K Q I N Y D S L T R G D E L Q K G A - f K C V A V F V S S S T S L R S R R F T T I P S P A A M R S S S A P S - BcgI BclI Tth111I XhoI | | | | AAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TTTAGTTAGCGACGACTAGTCCTCCCTACGGGAGGAACAGGACTTAGAACCTGAACTGCAACAGCTATCATAGTCTACTGAGTTGGAGCTCCCATTATCA a I N R C * S G G M P S L S * I L D L T L S I V S D D S T S R V I V - b K S I A A D Q E G C P P C P E S W T * R C R * Y Q M T Q P R G * * S - c N Q S L L I R R D A L L V L N L G L D V V D S I R * L N L E G N S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d F D I A A S * S P H G G Q G S D Q V Q R Q R Y Y * I V * G R P Y Y - e F I L R Q Q D P P I G E K D Q I K S K V N D I T D S S E V E L T I T - f F * D S S I L L S A R R T R F R P S S T T S L I L H S L R S P L L - BglII | CTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGGTGGCGGTGATGTGATACAAGTGTAGTTTGGTTGTTGGTATTGGGGATGGGATGATTTGGATGGAT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GAACGGCCAGTTCCAGAACTGCTTCTAGACGTACCACCGCCACTACACTATGTTCACATCAAACCAACAACCATAACCCCTACCCTACTAAACCTACCTA a L P V K V L T K I C M V A V M * Y K C S L V V G I G D G M I W M D - b C R S R S * R R S A W W R * C D T S V V W L L V L G M G * F G W M - c L A G Q G L D E D L H G G G D V I Q V * F G C W Y W G W D D L D G W - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d D Q R D L D Q R L D A H H R H H S V L T T Q N N T N P I P H N P H I - e K G T L T K V F I Q M T A T I H Y L H L K T T P I P S P I I Q I S - f R A P * P R S S S R C P P P S T I C T Y N P Q Q Y Q P H S S K S P - BamHI EagI SmaI | NotI BssSI EcoRI PstI | | SpeI XbaI BsrBI|BpmI SacII SacI | | | | | | | || | | | GGTTGGGTTCAAAAAGAAGTAAATGATTTCCTCGTGCCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGCCACCGCGGGGAGCTCCAG 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 CCAACCCAAGTTTTTCTTCATTTACTAAAGGAGCACGGCTTAAGGACGTCGGGCCCCCTAGGTGATCAAGATCTCGCCGGCGGTGGCGCCCCTCGAGGTC a G W V Q K E V N D F L V P N S C S P G D P L V L E R P P P R G A P A - b V G F K K K * M I S S C R I P A A R G I H * F * S G R H R G E L Q - c L G S K R S K * F P R A E F L Q P G G S T S S R A A A T A G S S S - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d T P N L F F Y I I E E H R I G A A R P I W * N * L P R W R P S S W - e P Q T * F S T F S K R T G F E Q L G P S G S T R S R G G G R P A G - f H N P E F L L L H N G R A S N R C G P P D V L E L A A A V A P L E L - CTTTT 1001 ----- 1005 GAAAA a F - b L - c F - 1001 ----- 1005 d S K - e A K - f K - Enzymes that do cut: AceIII BamHI BbsI Bce83I BcgI BclI BglI BglII BpmI Bpu10I BsrBI BssSI EagI EciI EcoRI NgoAIV NotI PstI SacI SacII SalI SexAI SmaI SpeI StuI Tth111I XbaI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BfiI BplI Bpu1102I BsaI BsaBI BsaXI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EarI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NheI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RcaI RsrII SanDI SapI ScaI SfiI SgfI SgrAI SnaBI SphI SrfI Sse8387I Sse8647I SspI SwaI VspI XcmI XmnI