(Linear) MAP of: ./Fgr-Venn_Contig0145.seq check: 9634 from: 1 to: 714 Contig145 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * January 12, 2002 14:43 .. Bce83I | TGTCATCACTTCCTTTGGCAGTAGTTTTGCCAAGTTGTGATAGCATTGACTTGAGTTCTTCCATCTCTGCTCGCAGTTTGCGGACTTCGATCACAGCAGG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 ACAGTAGTGAAGGAAACCGTCATCAAAACGGTTCAACACTATCGTAACTGAACTCAAGAAGGTAGAGACGAGCGTCAAACGCCTGAAGCTAGTGTCGTCC a C H H F L W Q * F C Q V V I A L T * V L P S L L A V C G L R S Q Q A - b V I T S F G S S F A K L * * H * L E F F H L C S Q F A D F D H S R - c S S L P L A V V L P S C D S I D L S S S I S A R S L R T S I T A G - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d T M V E K P L L K A L N H Y C Q S S N K W R Q E C N A S K S * L L - e * * K R Q C Y N Q W T T I A N V Q T R G D R S A T Q P S R D C C - f D D S G K A T T K G L Q S L M S K L E E M E A R L K R V E I V A P - XcmI Eco57I BspGI XbaI XmnI | | | | | CTCATCTTCCACGTTTGGCTTGGCGGTTTCACAGGTCTTGGTCCAGCCTTCAGCTTCCATATCTAGATCACCATGAAACTGTTCCCATTCATGGATCAGG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GAGTAGAAGGTGCAAACCGAACCGCCAAAGTGTCCAGAACCAGGTCGGAAGTCGAAGGTATAGATCTAGTGGTACTTTGACAAGGGTAAGTACCTAGTCC a H L P R L A W R F H R S W S S L Q L P Y L D H H E T V P I H G S G - b L I F H V W L G G F T G L G P A F S F H I * I T M K L F P F M D Q V - c S S S T F G L A V S Q V L V Q P S A S I S R S P * N C S H S W I R - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S M K W T Q S P P K V P R P G A K L K W I * I V M F S N G N M S * - e A * R G R K A Q R N * L D Q D L R * S G Y R S * W S V T G M * P D P - f E D E V N P K A T E C T K T W G E A E M D L D G H F Q E W E H I L - DraIII NspV DrdII BseRI | | | | TCGTCATCTTCTTCACCCCGTGATCGGTTACTTCGAATCTTGCGTGCATCTCGTTTCTCGAACCAAGCGGCCACAAAGAGGAGGGGGGAGTAGAGGATAG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGCAGTAGAAGAAGTGGGGCACTAGCCAATGAAGCTTAGAACGCACGTAGAGCAAAGAGCTTGGTTCGCCGGTGTTTCTCCTCCCCCCTCATCTCCTATC a R H L L H P V I G Y F E S C V H L V S R T K R P Q R G G G S R G * - b V I F F T P * S V T S N L A C I S F L E P S G H K E E G G V E D S - c S S S S S P R D R L L R I L R A S R F S N Q A A T K R R G E * R I A - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d T T M K K V G H D T V E F R A H M E N R S G L P W L S S P P T S S L - e R * R R * G T I P * K S D Q T C R T E R V L R G C L P P P L L P Y - f D D D E E G R S R N S R I K R A D R K E F W A A V F L L P S Y L I - Tth111I SexAI | | CCATGACGCAGTCGTTGATAAACTCGTAAGTAGGCTTGGGCATCCACCATTCCAGCAGACCTGAAACAACAATCTCGACCAGGTTGAATGGAGCGATATA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GGTACTGCGTCAGCAACTATTTGAGCATTCATCCGAACCCGTAGGTGGTAAGGTCGTCTGGACTTTGTTGTTAGAGCTGGTCCAACTTACCTCGCTATAT a P * R S R * * T R K * A W A S T I P A D L K Q Q S R P G * M E R Y I - b H D A V V D K L V S R L G H P P F Q Q T * N N N L D Q V E W S D I - c M T Q S L I N S * V G L G I H H S S R P E T T I S T R L N G A I Y - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d W S A T T S L S T L L S P C G G N W C V Q F L L R S W T S H L S I - e G H R L R Q Y V R L Y A Q A D V M G A S R F C C D R G P Q I S R Y - f A M V C D N I F E Y T P K P M W W E L L G S V V I E V L N F P A I Y - SacI BbsI EarI Pfl1108I | | | | TACATTCTCGTCGGGAGCTCTGACAAATTGCATTGTCTTCTGTGCGAAGAGTGCCAGATATTCGTCATCAGCATTTTCATATATACCCTCGTAGGCAGAG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ATGTAAGAGCAGCCCTCGAGACTGTTTAACGTAACAGAAGACACGCTTCTCACGGTCTATAAGCAGTAGTCGTAAAAGTATATATGGGAGCATCCGTCTC a H S R R E L * Q I A L S S V R R V P D I R H Q H F H I Y P R R Q S - b Y I L V G S S D K L H C L L C E E C Q I F V I S I F I Y T L V G R V - c T F S S G A L T N C I V F C A K S A R Y S S S A F S Y I P S * A E - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d Y M R T P L E S L N C Q R R H S S H W I N T M L M K M Y V R T P L - e I C E R R S S Q C I A N D E T R L T G S I R * * C K * I Y G R L C L - f V N E D P A R V F Q M T K Q A F L A L Y E D D A N E Y I G E Y A S - XbaI BclI BamHI | | | TTATAAAGCGCAATAAGGATGTTGAGCAGAATGATCTAGACATTGTTAGCTTTGATCATGGGGATCCCTTGATTATTGACTTACCATAACAACAAAAGTA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AATATTTCGCGTTATTCCTACAACTCGTCTTACTAGATCTGTAACAATCGAAACTAGTACCCCTAGGGAACTAATAACTGAATGGTATTGTTGTTTTCAT a Y K A Q * G C * A E * S R H C * L * S W G S L D Y * L T I T T K V - b I K R N K D V E Q N D L D I V S F D H G D P L I I D L P * Q Q K * - c L * S A I R M L S R M I * T L L A L I M G I P * L L T Y H N N K S K - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d T I F R L L S T S C F S R S M T L K S * P S G K I I S K G Y C C F Y - e * L A C Y P H Q A S H D L C Q * S Q D H P D R S * Q S V M V V F T - f N Y L A I L I N L L I I * V N N A K I M P I G Q N N V * W L L L L - MluI SalI BsrBI | DrdI | | | | | AAACAGTAGTAGAGAATCAGACCAAAAGGATGTCCAAAGTTCTCGAAACCATCAAATTCGGGGCTTTGCATGATAGATTTGAGCGGACGCGTGGGTCGAC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TTTGTCATCATCTCTTAGTCTGGTTTTCCTACAGGTTTCAAGAGCTTTGGTAGTTTAAGCCCCGAAACGTACTATCTAAACTCGCCTGCGCACCCAGCTG a K Q * * R I R P K G C P K F S K P S N S G L C M I D L S G R V G R R - b N S S R E S D Q K D V Q S S R N H Q I R G F A * * I * A D A W V D - c T V V E N Q T K R M S K V L E T I K F G A L H D R F E R T R G S T - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d F L L L S D S W F S T W L E R F W * I R P K A H Y I Q A S A H T S - e F C Y Y L I L G F P H G F N E F G D F E P S Q M I S K L P R T P R - f L V T T S F * V L L I D L T R S V M L N P A K C S L N S R V R P D V - GGGGAATNCGGACC 701 ---------+---- 714 CCCCTTANGCCTGG a G ? R T - b G E ? G - c G N ? D - 701 ---------+---- 714 d P S ? P G - e R P I R V - f P F ? S - Enzymes that do cut: BamHI BbsI Bce83I BclI BseRI BspGI BsrBI DraIII DrdI DrdII EarI Eco57I MluI NspV Pfl1108I SacI SalI SexAI Tth111I XbaI XcmI XmnI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BcgI BfiI BglI BglII BplI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BsgI BsiWI BsmI BsmBI BspEI BspLU11I BspMI BsrDI BsrGI BssHII BssSI Bst1107I BstEII BstXI Bsu36I ClaI DraI EagI EciI Eco47III EcoNI EcoRI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacII SanDI SapI ScaI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XhoI