(Linear) MAP of: ./Fgr-Venn_Contig0149.seq check: 1029 from: 1 to: 909 Contig149 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * January 12, 2002 14:43 .. SphI BamHI XhoI | | | CTAAAAAAAAGCTATTACTTCGCATGCCCGCGTAAGTAAGTTTGGATCCTTTAGAGCCGCCGCCCTTTTTTTTTTTCCCCCCCTCGAGTTTTTTTTTTTT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GATTTTTTTTCGATAATGAAGCGTACGGGCGCATTCATTCAAACCTAGGAAATCTCGGCGGCGGGAAAAAAAAAAAGGGGGGGAGCTCAAAAAAAAAAAA a L K K S Y Y F A C P R K * V W I L * S R R P F F F S P P R V F F F F - b * K K A I T S H A R V S K F G S F R A A A L F F F P P L E F F F F - c K K K L L L R M P A * V S L D P L E P P P F F F F P P S S F F F F - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d * F F A I V E C A R T L L N P D K L A A A R K K K G G R S N K K K - e F F L * * K A H G R L Y T Q I R * L R R G K K K E G G R T K K K - f L F F S N S R M G A Y T L K S G K S G G G K K K K G G E L K K K K - BsmBI XhoI | | TTTTTGCATAGATGGAACTCGTAACTTCTTTCTTTTTTTATTTCGTCTCGACGCTACATCTCGAGGGATATACCAGCGTCGAAATCGAGATTCGTGTGGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 AAAAACGTATCTACCTTGAGCATTGAAGAAAGAAAAAAATAAAGCAGAGCTGCGATGTAGAGCTCCCTATATGGTCGCAGCTTTAGCTCTAAGCACACCG a F A * M E L V T S F F F Y F V S T L H L E G Y T S V E I E I R V A - b F L H R W N S * L L S F F I S S R R Y I S R D I P A S K S R F V W L - c F C I D G T R N F F L F L F R L D A T S R G I Y Q R R N R D S C G - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d K K C L H F E Y S R E K K I E D R R * M E L S I G A D F D L N T H - e K K A Y I S S T V E K K K * K T E V S C R S P Y V L T S I S I R T A - f K Q M S P V R L K K R K K N R R S A V D R P I Y W R R F R S E H P - DrdII PshAI | | TCGTAATCTAAATCGCTGCTCGCCTGTTTGTCATTACAGACAGGACGGAACAGAACCAAAAACATCACCGTGGCATTATTGCCAACTTAGACCTTCGTCT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGCATTAGATTTAGCGACGAGCGGACAAACAGTAATGTCTGTCCTGCCTTGTCTTGGTTTTTGTAGTGGCACCGTAATAACGGTTGAATCTGGAAGCAGA a R N L N R C S P V C H Y R Q D G T E P K T S P W H Y C Q L R P S S - b V I * I A A R L F V I T D R T E Q N Q K H H R G I I A N L D L R L - c S * S K S L L A C L S L Q T G R N R T K N I T V A L L P T * T F V S - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S T I * I A A R R N T M V S L V S C F W F C * R P M I A L K S R R R - e R L R F R Q E G T Q * * L C S P V S G F V D G H C * Q W S L G E D - f E Y D L D S S A Q K D N C V P R F L V L F M V T A N N G V * V K T - AflII BsmBI PflMI BseRI SgrAI | | | | CCTTAAGACCGTGCTTCCAGAAAATGGTGTAAGGGGTAACACCGTCCTCACGGTAGTTGAGGAGGACAACCATTCCATCGGGGTCCATAGACTCGCCGGT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GGAATTCTGGCACGAAGGTCTTTTACCACATTCCCCATTGTGGCAGGAGTGCCATCAACTCCTCCTGTTGGTAAGGTAGCCCCAGGTATCTGAGCGGCCA a P * D R A S R K W C K G * H R P H G S * G G Q P F H R G P * T R R C - b L K T V L P E N G V R G N T V L T V V E E D N H S I G V H R L A G - c L R P C F Q K M V * G V T P S S R * L R R T T I P S G S I D S P V - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R L V T S G S F P T L P L V T R V T T S S S L W E M P T W L S A P - e G * S R A E L F H H L P Y C R G * P L Q P P C G N W R P G Y V R R - f E K L G H K W F I T Y P T V G D E R Y N L L V V M G D P D M S E G T - DrdI BcgI PinAI BsaI BbsI BcgI EciI | | | | | | | GTAGAACTCGAAGTCCTTGAACTTGGGGACGATGGTGTCCTTGACGAATTTTGAAGCACCGGTCTCGAAAGCCTTGATGTCTTCGGCGGAAGAACCGTTC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CATCTTGAGCTTCAGGAACTTGAACCCCTGCTACCACAGGAACTGCTTAAAACTTCGTGGCCAGAGCTTTCGGAACTACAGAAGCCGCCTTCTTGGCAAG a R T R S P * T W G R W C P * R I L K H R S R K P * C L R R K N R S - b V E L E V L E L G D D G V L D E F * S T G L E S L D V F G G R T V L - c * N S K S L N L G T M V S L T N F E A P V S K A L M S S A E E P F - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d T S S S T R S S P S S P T R S S N Q L V P R S L R S T K P P L V T - e H L V R L G Q V Q P R H H G Q R I K F C R D R F G Q H R R R F F R E - f Y F E F D K F K P V I T D K V F K S A G T E F A K I D E A S S G N - Eco57I EarI BglI | SapI HindIII SfiI | Bce83I | BsmBI BpmI | | | | | | | TCCTGAAGCTTGGCCTTGATGGCCTTCATGTAGCCCTTGAGGTAAGCCAGGTAGCTCTTCTTGTCAAAGGTGGTGCTCTGGAGACGGAAGGAGTTGACAA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AGGACTTCGAACCGGAACTACCGGAAGTACATCGGGAACTCCATTCGGTCCATCGAGAAGAACAGTTTCCACCACGAGACCTCTGCCTTCCTCAACTGTT a P E A W P * W P S C S P * G K P G S S S C Q R W C S G D G R S * Q - b L K L G L D G L H V A L E V S Q V A L L V K G G A L E T E G V D N - c S * S L A L M A F M * P L R * A R * L F L S K V V L W R R K E L T M - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d R R F S P R S P R * T A R S T L W T A R R T L P P A R S V S P T S L - e G S A Q G Q H G E H L G Q P L G P L E E Q * L H H E P S P L L Q C - f E Q L K A K I A K M Y G K L Y A L Y S K K D F T T S Q L R F S N V - Bpu10I EciI BcgI DrdI BcgI BseRI BglI | BcgI HpaI BseRI | | | | | | | | TGTTGTTGACCTTGACCGCGCCGTCGTCGAGATCCTCAGCAGCCTCCTCGGCGGAAGCGTTGGCACCGATGTTAACTTCGACAGCACCCTCCTCGATCAT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 ACAACAACTGGAACTGGCGCGGCAGCAGCTCTAGGAGTCGTCGGAGGAGCCGCCTTCGCAACCGTGGCTACAATTGAAGCTGTCGTGGGAGGAGCTAGTA a C C * P * P R R R R D P Q Q P P R R K R W H R C * L R Q H P P R S W - b V V D L D R A V V E I L S S L L G G S V G T D V N F D S T L L D H - c L L T L T A P S S R S S A A S S A E A L A P M L T S T A P S S I M - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d T T S R S R A T T S I R L L R R P P L T P V S T L K S L V R R S * - e H Q Q G Q G R R R R S G * C G G R R F R Q C R H * S R C C G G R D - f I N N V K V A G D D L D E A A E E A S A N A G I N V E V A G E E I M - BplI BcgI Pfl1108I EcoNI Pfl1108I Bce83I | SacI | | | | | | | GGCACAGTCGGCCTCGTAGACGATGCCATCAACCTCCTTGAGGTCGTAGGAGTCGGAGATGAGCTCGTCACCGTTGAGGATGTCGTTGTAGATAAGCATG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CCGTGTCAGCCGGAGCATCTGCTACGGTAGTTGGAGGAACTCCAGCATCCTCAGCCTCTACTCGAGCAGTGGCAACTCCTACAGCAACATCTATTCGTAC a H S R P R R R C H Q P P * G R R S R R * A R H R * G C R C R * A * - b G T V G L V D D A I N L L E V V G V G D E L V T V E D V V V D K H D - c A Q S A S * T M P S T S L R S * E S E M S S S P L R M S L * I S M - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d P V T P R T S S A M L R R S T T P T P S S S T V T S S T T T S L C - e H C L R G R L R H W * G G Q P R L L R L H A R * R Q P H R Q L Y A H - f A C D A E Y V I G D V E K L D Y S D S I L E D G N L I D N Y I L M - DrdI MluI SalI RsrII MluI| SacII | DrdI | SmaI BspEI | || | | | | | | | ATGGCGGTATGAGTCTGTTGGACCTTTGGAGATATTTAGACCCACGCGTCCGCGGACGCGTGGGTCGACCCGGGAATCCGGACCGGCACCGGCAGGCGTA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TACCGCCATACTCAGACAACCTGGAAACCTCTATAAATCTGGGTGCGCAGGCGCCTGCGCACCCAGCTGGGCCCTTAGGCCTGGCCGTGGCCGTCCGCAT a W R Y E S V G P L E I F R P T R P R T R G S T R E S G P A P A G V - b G G M S L L D L W R Y L D P R V R G R V G R P G N P D R H R Q A Y - c M A V * V C W T F G D I * T H A S A D A W V D P G I R T G T G R R T - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d S P P I L R N S R Q L Y K S G R T R P R T P R G P F G S R C R C A Y - e H R Y S D T P G K S I N L G V R G R V R P D V R S D P G A G A P T - f I A T H T Q Q V K P S I * V W A D A S A H T S G P I R V P V P L R - CCAGCTTTT 901 --------- 909 GGTCGAAAA a P A F - b Q L - c S F - 901 --------- 909 d W S K - e G A K - f V L K - Enzymes that do cut: AflII BamHI BbsI Bce83I BcgI BglI BplI BpmI Bpu10I BsaI BseRI BsmBI BspEI DrdI DrdII EarI EciI Eco57I EcoNI HindIII HpaI MluI Pfl1108I PflMI PinAI PshAI RsrII SacI SacII SalI SapI SfiI SgrAI SmaI SphI XhoI Enzymes that do not cut: AatII AceIII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BclI BfiI BglII Bpu1102I BsaBI BsaXI BsbI BsgI BsiWI BsmI BspGI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII BssSI Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII EagI Eco47III EcoRI EcoRV FseI FspI HgiEII KpnI MfeI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PmeI PmlI Psp1406I PstI PvuI PvuII RcaI SanDI ScaI SexAI SgfI SnaBI SpeI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XmnI