Score E
Sequences producing significant alignments: (bits) Value
ref|NP_013139.1| subunit VIb of cytochrome c oxidase; Cox12... 114 4e-25
pir||T40973 cytochrome c oxidase polypeptide vib - fission ... 111 3e-24
gb|AAF49015.1| (AE003513) CG14235 gene product [Drosophila ... 101 4e-21
dbj|BAA87883.1| (AB035444) subunit 6b of cytochrome c oxida... 99 3e-20
dbj|BAA76393.1| (AB025187) cytochrome c oxidase subunit 6b-... 99 3e-20
ref|NP_001854.1| cytochrome c oxidase subunit VIb >gi|11711... 95 3e-19
prf||1614425A chymodenin [Sus scrofa domestica] 92 3e-18
pdb|2OCC|H Chain H, Bovine Heart Cytochrome C Oxidase At Th... 90 1e-17
sp|P56391|COXG_MOUSE CYTOCHROME C OXIDASE POLYPEPTIDE VIB (... 90 1e-17
sp|P00429|COXG_BOVIN CYTOCHROME C OXIDASE POLYPEPTIDE VIB (... 90 1e-17
pir||T02907 hypothetical protein T13J8.170 - Arabidopsis th... 83 1e-15
pir||A60325 cytochrome-c oxidase (EC 1.9.3.1) chain VII - p... 76 2e-13
gb|AAF25969.1|AC017118_6 (AC017118) F6N18.10 [Arabidopsis t... 51 5e-06
emb|CAB65851.1| (AL050231) alternatively spliced form [Dros... 42 0.003
sp|P71884|YN28_MYCTU HYPOTHETICAL 36.8 KDA PROTEIN RV2328 >... 37 0.087
emb|CAB51691.1| (AL109630) BACR7A4.ae [Drosophila melanogas... 36 0.15
emb|CAB82670.1| (AL162295) putative protein [Arabidopsis th... 32 2.2
pir||T34649 hypothetical protein SC1A11.02c SC1A11.02c - St... 32 2.9
pir||B71168 hypothetical protein PH0542 - Pyrococcus horiko... 32 2.9
gb|AAC61680.1| (AF051327) putative cytochrome c oxidase sub... 32 3.8
emb|CAB86699.1| (AL163505) hypothetical protein L3640.04 [L... 32 3.8
emb|CAA11855.1| (AJ224158) clpC [Bacillus anthracis] 31 6.5
pir||E70522 probable polyketide synthase - Mycobacterium tu... 31 8.5
gb|AAD42044.1|AF097183_1 (AF097183) unknown [Cryptosporidiu... 31 8.5
gb|AAD53929.1|AF179611_13 (AF179611) tetratricopeptide repe... 31 8.5
gb|AAF57087.1| (AE003775) CG11316 gene product [Drosophila ... 31 8.5
dbj|BAA29030.1| (AB015510) FII-CMCase [Aspergillus aculeatus] 31 8.5
>ref|NP_013139.1| subunit VIb of cytochrome c oxidase; Cox12p
sp|Q01519|COXG_YEAST CYTOCHROME C OXIDASE POLYPEPTIDE VIB (AED)
pir||S31256 cytochrome-c oxidase (EC 1.9.3.1) chain VIb - yeast (Saccharomyces
cerevisiae)
gb|AAA34510.1| (M98332) cytochrome c oxidase subunit VIb [Saccharomyces
cerevisiae]
emb|CAA97566.1| (Z73210) ORF YLR038c [Saccharomyces cerevisiae]
Length = 83
Score = 114 bits (283), Expect = 4e-25
Identities = 44/66 (66%), Positives = 52/66 (78%)
Frame = +1
Query: 112 TAGTDARFPNMNQTKHCWQNYVDYHKCIIAKGEDFAPCRQFWLSYRSLCPSGWYQRWDEQ 291
T G DARFP NQTKHCWQ+YVDYHKC+ KGEDFAPC+ FW +Y +LCP W ++WD+Q
Sbjct: 11 TVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWDDQ 70
Query: 292 RESGNF 309
RE G F
Sbjct: 71 REKGIF 76
>pir||T40973 cytochrome c oxidase polypeptide vib - fission yeast
(Schizosaccharomyces pombe)
emb|CAA21442.1| (AL031966) cytochrome c oxidase polypeptide vib
[Schizosaccharomyces pombe]
Length = 83
Score = 111 bits (276), Expect = 3e-24
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +1
Query: 130 RFPNMNQTKHCWQNYVDYHKCIIAKGEDFAPCRQFWLSYRSLCPSGWYQRWDEQRESGNF 309
RFPN NQTKHC+Q+Y+DY +CI AKGEDF PC+QFW +Y+SLCP W +RWDEQRE+G F
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79
Query: 310 PVKL 321
P +
Sbjct: 80 PAPI 83
>gb|AAF49015.1| (AE003513) CG14235 gene product [Drosophila melanogaster]
Length = 92
Score = 101 bits (249), Expect = 4e-21
Identities = 38/74 (51%), Positives = 55/74 (73%)
Frame = +1
Query: 100 FKFVTAGTDARFPNMNQTKHCWQNYVDYHKCIIAKGEDFAPCRQFWLSYRSLCPSGWYQR 279
+K TA D RFPN N T++C+Q+Y+D+H+C +GEDFAPC F Y+S+CP+ W ++
Sbjct: 19 YKLETAPFDPRFPNQNVTRYCYQSYIDFHRCQKKRGEDFAPCNYFQKVYKSMCPNAWVEK 78
Query: 280 WDEQRESGNFPVKL 321
WD+QRESG FP ++
Sbjct: 79 WDDQRESGTFPGRI 92
>dbj|BAA87883.1| (AB035444) subunit 6b of cytochrome c oxidase [Arabidopsis
thaliana]
gb|AAF18532.1|AC006551_18 (AC006551) Subunit 6b of cytochrome c oxidase [Arabidopsis
thaliana]
Length = 191
Score = 98.7 bits (242), Expect = 3e-20
Identities = 43/87 (49%), Positives = 54/87 (61%)
Frame = +1
Query: 52 NPFKMSDDGQELVTKPFKFVTAGTDARFPNMNQTKHCWQNYVDYHKCIIAKGEDFAPCRQ 231
N S++ E K TA D RFP NQT+HC+ YV+YH+C+ AKG+D C +
Sbjct: 101 NDENASEEVAEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDK 160
Query: 232 FWLSYRSLCPSGWYQRWDEQRESGNFP 312
F YRSLCPS W RW+EQRE+G FP
Sbjct: 161 FAKFYRSLCPSEWVDRWNEQRENGTFP 187
>dbj|BAA76393.1| (AB025187) cytochrome c oxidase subunit 6b-1 [Oryza sativa]
Length = 169
Score = 98.7 bits (242), Expect = 3e-20
Identities = 43/78 (55%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Frame = +1
Query: 79 QELVTKP-FKFVTAGTDARFPNMNQTKHCWQNYVDYHKCIIAKGEDFAPCRQFWLSYRSL 255
+E KP K TA D RFP NQT+HC+ YV+YH+C+ AKGED C +F YRSL
Sbjct: 88 EEAEEKPEIKIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSL 147
Query: 256 CPSGWYQRWDEQRESGNFP 312
CP W +RW+EQRE+G FP
Sbjct: 148 CPGEWVERWNEQRENGTFP 166
>ref|NP_001854.1| cytochrome c oxidase subunit VIb
sp|P14854|COXG_HUMAN CYTOCHROME C OXIDASE POLYPEPTIDE VIB (AED)
pir||OGHU6B cytochrome-c oxidase (EC 1.9.3.1) chain VIb - human
emb|CAA32114.1| (X13923) cytochrome c oxidase subunit VIb (AA 1-86) [Homo sapiens]
emb|CAA38352.1| (X54473) cytochrome oxidase subunit VIb [Homo sapiens]
gb|AAB57628.1| (AC002115) COXG [Homo sapiens]
Length = 86
Score = 95.2 bits (233), Expect = 3e-19
Identities = 40/81 (49%), Positives = 56/81 (68%), Gaps = 3/81 (3%)
Frame = +1
Query: 79 QELVTKPFKFVTAGTDARFPNMNQTKHCWQNYVDYHKC---IIAKGEDFAPCRQFWLSYR 249
+++ TK + TA D+RFPN NQT++CWQNY+D+H+C + AKG D + C + Y+
Sbjct: 3 EDMETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQ 62
Query: 250 SLCPSGWYQRWDEQRESGNFPVKL 321
SLCP+ W WDEQR G FP K+
Sbjct: 63 SLCPTSWVTDWDEQRAEGTFPGKI 86
>prf||1614425A chymodenin [Sus scrofa domestica]
Length = 85
Score = 91.7 bits (224), Expect = 3e-18
Identities = 38/81 (46%), Positives = 55/81 (66%), Gaps = 3/81 (3%)
Frame = +1
Query: 79 QELVTKPFKFVTAGTDARFPNMNQTKHCWQNYVDYHKC---IIAKGEDFAPCRQFWLSYR 249
+++ TK + TA D+RFPN NQT++CWQNY+D+H+C + AKG D + C + Y+
Sbjct: 2 EDIQTKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYK 61
Query: 250 SLCPSGWYQRWDEQRESGNFPVKL 321
SLCP W WD++R G FP K+
Sbjct: 62 SLCPISWVSAWDDRRAEGTFPGKI 85
>pdb|2OCC|H Chain H, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|U Chain U, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCR|H Chain H, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|U Chain U, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCO|H Chain H, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound
State
pdb|1OCO|U Chain U, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound
State
pdb|1OCC|H Chain H, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|U Chain U, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCZ|H Chain H, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|U Chain U, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
Length = 85
Score = 89.7 bits (219), Expect = 1e-17
Identities = 37/81 (45%), Positives = 54/81 (65%), Gaps = 3/81 (3%)
Frame = +1
Query: 79 QELVTKPFKFVTAGTDARFPNMNQTKHCWQNYVDYHKC---IIAKGEDFAPCRQFWLSYR 249
+++ K + TA D+RFPN NQT++CWQNY+D+H+C + AKG D + C + Y+
Sbjct: 2 EDIQAKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYK 61
Query: 250 SLCPSGWYQRWDEQRESGNFPVKL 321
SLCP W WD++R G FP K+
Sbjct: 62 SLCPISWVSTWDDRRAEGTFPGKI 85
>sp|P56391|COXG_MOUSE CYTOCHROME C OXIDASE POLYPEPTIDE VIB (AED)
Length = 86
Score = 89.7 bits (219), Expect = 1e-17
Identities = 38/81 (46%), Positives = 54/81 (65%), Gaps = 3/81 (3%)
Frame = +1
Query: 79 QELVTKPFKFVTAGTDARFPNMNQTKHCWQNYVDYHKC---IIAKGEDFAPCRQFWLSYR 249
+++ TK + TA D+RFPN NQTK+CWQNY+D+H+C + AKG D + C + Y+
Sbjct: 3 EDIKTKIKNYKTAPFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYK 62
Query: 250 SLCPSGWYQRWDEQRESGNFPVKL 321
SLCP W WD++ G FP K+
Sbjct: 63 SLCPVSWVSAWDDRIAEGTFPGKI 86
>sp|P00429|COXG_BOVIN CYTOCHROME C OXIDASE POLYPEPTIDE VIB (AED)
pir||OGBO7 cytochrome-c oxidase (EC 1.9.3.1) chain VIb - bovine
emb|CAA33211.1| (X15112) cytochrome c oxidase subunit VIb (AA 1-86) [Bos taurus]
Length = 86
Score = 89.7 bits (219), Expect = 1e-17
Identities = 37/81 (45%), Positives = 54/81 (65%), Gaps = 3/81 (3%)
Frame = +1
Query: 79 QELVTKPFKFVTAGTDARFPNMNQTKHCWQNYVDYHKC---IIAKGEDFAPCRQFWLSYR 249
+++ K + TA D+RFPN NQT++CWQNY+D+H+C + AKG D + C + Y+
Sbjct: 3 EDIQAKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYK 62
Query: 250 SLCPSGWYQRWDEQRESGNFPVKL 321
SLCP W WD++R G FP K+
Sbjct: 63 SLCPISWVSTWDDRRAEGTFPGKI 86
>pir||T02907 hypothetical protein T13J8.170 - Arabidopsis thaliana
emb|CAB36775.1| (AL035524) putative protein [Arabidopsis thaliana]
emb|CAB79608.1| (AL161572) putative protein [Arabidopsis thaliana]
Length = 164
Score = 83.5 bits (203), Expect = 1e-15
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Frame = +1
Query: 112 TAGTDARFPNMNQTKHCWQNYVDYHK------CIIAKGEDFAPCRQFWLSYRSLCPSGWY 273
TA D RFP NQT+HC+ Y+++H+ C AKGED C +F YR+LCP W
Sbjct: 89 TAPADFRFPTTNQTRHCFTRYIEFHRYSCVIECTTAKGEDANECERFAKYYRALCPGEWV 148
Query: 274 QRWDEQRESGNFP 312
+W+EQRE+G FP
Sbjct: 149 DKWNEQRETGTFP 161
>pir||A60325 cytochrome-c oxidase (EC 1.9.3.1) chain VII - pig (fragments)
Length = 71
Score = 76.1 bits (184), Expect = 2e-13
Identities = 31/69 (44%), Positives = 41/69 (58%)
Frame = +1
Query: 106 FVTAGTDARFPNMNQTKHCWQNYVDYHKCIIAKGEDFAPCRQFWLSYRSLCPSGWYQRWD 285
+ TA D+RFPN NQT +CWQNY+D+H+ + AKG D + C + Y+SLCP W
Sbjct: 2 YQTAPFDSRFPNQNQTXNCWQNYLDFHRAMTAKGGDVSVCEWYRXVYKSLCPISXVSAWX 61
Query: 286 EQRESGNFP 312
G FP
Sbjct: 62 XXXAEGTFP 70
>gb|AAF25969.1|AC017118_6 (AC017118) F6N18.10 [Arabidopsis thaliana]
Length = 304
Score = 51.2 bits (120), Expect = 5e-06
Identities = 24/67 (35%), Positives = 32/67 (46%)
Frame = +1
Query: 61 KMSDDGQELVTKPFKFVTAGTDARFPNMNQTKHCWQNYVDYHKCIIAKGEDFAPCRQFWL 240
K D G+E A + RFP N+T+HC+ ++ YHKCI G D C
Sbjct: 49 KRGDSGRE--------TDAAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRD 100
Query: 241 SYRSLCP 261
RS+CP
Sbjct: 101 YVRSICP 107
>emb|CAB65851.1| (AL050231) alternatively spliced form [Drosophila melanogaster]
Length = 674
Score = 42.2 bits (97), Expect = 0.003
Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 9/63 (14%)
Frame = +1
Query: 133 FPNMNQTKHCWQNYVDYHKCI--------IAKGEDF-APCRQFWLSYRSLCPSGWYQRWD 285
FP+ + K CW N +Y KC+ GE PC+ S+ CP W + +D
Sbjct: 3 FPDKAERKKCWNNRDEYWKCLEEHAPKHSSTSGEKVPTPCQSLRKSFEQSCPGQWVKHFD 62
Query: 286 EQRESGNFPVKL 321
+R F K+
Sbjct: 63 RKRTYDQFKEKM 74
>sp|P71884|YN28_MYCTU HYPOTHETICAL 36.8 KDA PROTEIN RV2328
pir||A70705 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
emb|CAB02062.1| (Z79702) PE [Mycobacterium tuberculosis]
Length = 382
Score = 37.1 bits (84), Expect = 0.087
Identities = 30/77 (38%), Positives = 48/77 (61%), Gaps = 10/77 (12%)
Frame = -3
Query: 303 AGLALLIPTLVPAGGAEGSVRQ---------PELA-AGRKVLALGDNALVVIDVVLPAVL 154
AGLA ++ +V AG +GS + P LA +G + + G +AL + ++ PAV+
Sbjct: 165 AGLAQVVNGVVTAG--QGSAAKLATALQSAAPWLAKSGGEFIVAGQSALTGVALLQPAVV 222
Query: 153 GLVHVGETSISASSDKLEGLGNKLLTV 73
G+V G T ++A + GLG LLT+
Sbjct: 223 GVVQAGGTFLTAGTSAATGLG--LLTL 247
>emb|CAB51691.1| (AL109630) BACR7A4.ae [Drosophila melanogaster]
Length = 433
Score = 36.4 bits (82), Expect = 0.15
Identities = 28/65 (43%), Positives = 35/65 (53%)
Frame = -3
Query: 333 SLSIELDGEVAGLALLIPTLVPAGGAEGSVRQPELAAGRKVLALGDNALVVIDVVLPAVL 154
SL++ LDG G + PAGGA S R ELA +V+ LG N V+ VLP
Sbjct: 355 SLALGLDGGGGGGS-------PAGGARSS-RARELALDAEVVVLGQNR--VLQAVLPVPD 404
Query: 153 GLVHV 139
GLVH+
Sbjct: 405 GLVHL 409
>emb|CAB82670.1| (AL162295) putative protein [Arabidopsis thaliana]
Length = 272
Score = 32.5 bits (72), Expect = 2.2
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = -3
Query: 231 LAAGRKVLA--LGDNALVVIDVVLP-AVLGLVHVGETSISASSDKLEGLGNKLLTVVRHF 61
+AA ++ LA L + AL + D+V AV G ET + S KL+ G +LTV+RH
Sbjct: 193 IAASKQKLAENLWEKALKLRDIVTEQAVKGKHFFLETDMKGPSLKLDNTGKAILTVLRHL 252
Query: 60 EWIDE 46
I E
Sbjct: 253 GRISE 257
>pir||T34649 hypothetical protein SC1A11.02c SC1A11.02c - Streptomyces
coelicolor (fragment)
emb|CAA22742.1| (AL035205) hypothetical protein SC1A11.02c [Streptomyces coelicolor
A3(2)]
Length = 152
Score = 32.1 bits (71), Expect = 2.9
Identities = 25/56 (44%), Positives = 28/56 (49%), Gaps = 6/56 (10%)
Frame = -2
Query: 313 RGSC----RTRAAHPNAGTSRRGRGIGKTARTGGRAQSPRPWR--*CTCGNRRSFASSAW 152
RG+C RT A G GR T R GRA+ RPWR TCG S S W
Sbjct: 16 RGACCSSSRTTA---RGGRCPAGRSSPGTGRARGRARGGRPWRRSDSTCG---SAGCSRW 69
Query: 151 SG 146
+G
Sbjct: 70 TG 71
>pir||B71168 hypothetical protein PH0542 - Pyrococcus horikoshii
dbj|BAA29631.1| (AP000002) 253aa long hypothetical protein [Pyrococcus horikoshii]
Length = 253
Score = 32.1 bits (71), Expect = 2.9
Identities = 19/58 (32%), Positives = 35/58 (59%), Gaps = 4/58 (6%)
Frame = -3
Query: 243 RQPELAAGRKVLALGDNALVVIDVVLPAVLGLVHVGETSISASSDK----LEGLGNKLLT 76
R+ +L A + A+G+N+ ++ LP ++ L+H G+ + AS+ + L L +KL
Sbjct: 158 REDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK 217
Query: 75 VV 70
VV
Sbjct: 218 VV 219
>gb|AAC61680.1| (AF051327) putative cytochrome c oxidase subunit VI [Trypanosoma
brucei rhodesiense]
Length = 158
Score = 31.7 bits (70), Expect = 3.8
Identities = 15/59 (25%), Positives = 29/59 (48%), Gaps = 9/59 (15%)
Frame = +1
Query: 133 FPNMNQTKHCWQN---------YVDYHKCIIAKGEDFAPCRQFWLSYRSLCPSGWYQRWD 285
F + N + C N Y + C+ GE+ + C++ + W ++W+
Sbjct: 22 FTDFNDPRFCGTNNKQKNGILAYYQWLHCVGNWGEEHSMCKKMRWYVERMMQEVWLEKWE 81
Query: 286 EQRESGNF 309
E+R G+F
Sbjct: 82 EKRALGHF 89
>emb|CAB86699.1| (AL163505) hypothetical protein L3640.04 [Leishmania major]
Length = 157
Score = 31.7 bits (70), Expect = 3.8
Identities = 17/62 (27%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Frame = +1
Query: 124 DARF-PNMNQTKHCWQNYVDYHKCIIAKGEDFAPCRQFWLSYRSLCPSGWYQRWDEQRES 300
D RF N+ K+ Y + CI GE+ + C++ + W ++W+E+R
Sbjct: 27 DPRFCGTTNKQKNGILAYYQWLHCIGNWGEEHSMCKKMRWYVERMMHETWLEKWEEKRAL 86
Query: 301 GNF 309
G+F
Sbjct: 87 GHF 89
>emb|CAA11855.1| (AJ224158) clpC [Bacillus anthracis]
Length = 344
Score = 30.9 bits (68), Expect = 6.5
Identities = 24/65 (36%), Positives = 38/65 (57%), Gaps = 11/65 (16%)
Frame = -3
Query: 279 TLVPAGGAEG-----SVRQPELAAGRKVLALGDNAL------VVIDVVLPAVLGLVHVGE 133
TL+ AGGAEG ++ +P LA G ++ +G L + D L +HV E
Sbjct: 73 TLIGAGGAEGAIDASNILKPSLARG-ELQCIGATTLDEYRKYIEKDAALERRFQPIHVDE 131
Query: 132 TSISASSDKLEGLGNK 85
S+ S+ L+GL ++
Sbjct: 132 PSLDESTQILKGLRDR 147
>pir||E70522 probable polyketide synthase - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB10012.1| (Z97188) pks2 [Mycobacterium tuberculosis]
Length = 2126
Score = 30.5 bits (67), Expect = 8.5
Identities = 36/111 (32%), Positives = 49/111 (43%), Gaps = 6/111 (5%)
Frame = -3
Query: 333 SLSIELDGEVAGLALLIPTLVPAGGAEGSVRQPELAAGR--KVLALGDNALV-VIDV--- 172
S+ D + G LL+P V A VR R KV +G A + V+D
Sbjct: 1120 SVGAHPDSQSVGSGLLVPLGVRRVRAYAPVRTARYCYTRVTKVELVGVEADIDVLDAHGT 1179
Query: 171 VLPAVLGLVHVGETSISASSDKLEGLGNKLLTVVRHFEWIDEKLT*GRGDWSMTASC 1
VL AV GL +G T +S L +LLT+ H + E G G W + + C
Sbjct: 1180 VLLAVCGL-RIG-TGVSERDKHNRVLNERLLTIEWHQRELPEMDPSGAGKWLLISDC 1234
>gb|AAD42044.1|AF097183_1 (AF097183) unknown [Cryptosporidium parvum]
Length = 984
Score = 30.5 bits (67), Expect = 8.5
Identities = 17/59 (28%), Positives = 24/59 (39%), Gaps = 2/59 (3%)
Frame = +2
Query: 59 SKCRTT--VRXXXXXXXXXXXXXXXXXXXT*TRPSTAGKTTSITTSALSPRARTLRPAAS 232
SKC+ + VR T TRP+T + T+ TT P T RP +
Sbjct: 783 SKCKGSECVRPSTTTTTRFTSTTTTRSTTTTTRPTTTTRPTTTTTITTRPTTTTTRPTTT 842
Query: 233 S 235
+
Sbjct: 843 T 843
>gb|AAD53929.1|AF179611_13 (AF179611) tetratricopeptide repeat protein [Zymomonas mobilis]
Length = 648
Score = 30.5 bits (67), Expect = 8.5
Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 4/44 (9%)
Frame = -3
Query: 333 SLSIELDGEVAGLALLIPTLVPAGGAEGSV----RQPELAAGRKVLAL 202
+L + L G+VAG +I + +PAG AE R P L+A K A+
Sbjct: 233 ALILALTGDVAGANAIIKSTMPAGSAEAMASFLSRLPHLSAQEKAAAV 280
>gb|AAF57087.1| (AE003775) CG11316 gene product [Drosophila melanogaster]
Length = 352
Score = 30.5 bits (67), Expect = 8.5
Identities = 18/44 (40%), Positives = 27/44 (60%), Gaps = 1/44 (2%)
Frame = +2
Query: 149 RPSTAGKTTSITTSALSPRARTLRPAASSGCL-TDPSAPPAGTSV 280
RP T G T +TTSAL+ +A + A++ + T + PPA TS+
Sbjct: 160 RPPTIGAT--VTTSALTSKAANVANVAATATVPTGGAVPPASTSI 202
>dbj|BAA29030.1| (AB015510) FII-CMCase [Aspergillus aculeatus]
Length = 412
Score = 30.5 bits (67), Expect = 8.5
Identities = 17/46 (36%), Positives = 22/46 (46%)
Frame = +1
Query: 169 NYVDYHKCIIAKGEDFAPCRQFWLSYRSLCPSGWYQRWDEQRESGN 306
N+ Y+ II DFA FW +Y S CPS Y W + + N
Sbjct: 115 NFGRYYGNIITSTSDFAA---FWTTYVSFCPSSHY--WTHKDHADN 155
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117331428
Number of Sequences: 509459
Number of extensions: 2301084
Number of successful extensions: 7764
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7738
Number of HSP's gapped (non-prelim): 28
length of query: 140
length of database: 159,777,284
effective HSP length: 52
effective length of query: 88
effective length of database: 133,285,416
effective search space: 11729116608
effective search space used: 11729116608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 67 (30.5 bits)