The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.0.13 [May-26-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fgr_0_a15_t3_053.ab1.seq Fgr_0_A15_T3_053.ab1 0 0 0 1
825
(818 letters)
Database: nr
509,459 sequences; 159,777,284 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||A61183 hypothetical protein (sdsB region) - Pseudomona... 34 1.8
gb|AAF71766.1|AF263912_5 (AF263912) NysI [Streptomyces nour... 33 3.1
emb|CAB75630.1| (AL157415) hypothetical protein L8325.03 [L... 33 4.1
ref|NP_003481.1| Synapsin III >gi|6707726|sp|O14994|SYN3_HU... 33 4.1
emb|CAB62970.1| (Z82181) cE86D10.1 (synapsin III) [Homo sap... 33 4.1
pir||T01536 hypothetical protein A_IG005I10.20 - Arabidopsi... 32 7.1
emb|CAB40407.1| (AJ010592) histone H2B [Guillardia theta] 32 7.1
emb|CAB91743.1| (AL356173) hypothetical protein [Neurospora... 32 7.1
gb|AAD51327.1|AF171937_1 (AF171937) glycoprotein gE [Pseudo... 32 7.1
>pir||A61183 hypothetical protein (sdsB region) - Pseudomonas sp
Length = 312
Score = 34.0 bits (76), Expect = 1.8
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Frame = -3
Query: 537 APTPQDHCPQAPKEQCQDTALRPRPCVPRPHAVGRAQYA*PKRPQLGGPPSQIHLRRQ-- 364
AP P CP A + +C TA RP + R + P G P+ R
Sbjct: 138 APAPAGRCPGAVRGRCAGTARRPAAGGHAAAQLARGDFLPTGAPAAGPAPAPADGGRPGS 197
Query: 363 -LQHRSCGLSRQRRSPGETGLK--------R*LHGILRESAGRREGSQGCT 238
R G R PG G K R LHG G+R G T
Sbjct: 198 LPAGRHPGARRGGAGPGAVGGKRPAAGHRMRQLHGAEGAGGGKRRAEHGAT 248
>gb|AAF71766.1|AF263912_5 (AF263912) NysI [Streptomyces noursei]
Length = 9477
Score = 33.2 bits (74), Expect = 3.1
Identities = 19/55 (34%), Positives = 25/55 (44%)
Frame = +3
Query: 435 GQPREGEGHTAEDAKLCLGIVPWAPVGSGPEVLERHLDRVKEEAGDAWPKIKGLR 599
G P G+ H A DA W P G+ P L+ H DR+ + P +GLR
Sbjct: 1070 GTPLAGDPHPALDA------AQWPPAGAEPLPLDGHYDRLADGGFGYGPVFQGLR 1118
>emb|CAB75630.1| (AL157415) hypothetical protein L8325.03 [Leishmania major]
Length = 1396
Score = 32.8 bits (73), Expect = 4.1
Identities = 27/86 (31%), Positives = 32/86 (36%), Gaps = 5/86 (5%)
Frame = -3
Query: 495 QCQDTALRPRPCVPRPHAVGRAQYA*PKRPQLGGPPSQI-----HLRRQLQHRSCGLSRQ 331
QC P + H G+ P GGPP H RQ+QHR CG
Sbjct: 463 QCGSFTRVSSPPAQQHHTTGKDSRGRPGANSSGGPPHSSESPTHHHSRQVQHRHCGGDDG 522
Query: 330 RRSPGETGLKR*LHGILRESAGRREGSQGCT 238
+ ET L R + RR S G T
Sbjct: 523 NNAVPETVLPRLVDTKHHHRQPRRNRSLGGT 553
>ref|NP_003481.1| Synapsin III
sp|O14994|SYN3_HUMAN SYNAPSIN III
gb|AAC15101.1| (AF046873) synapsin IIIa [Homo sapiens]
Length = 580
Score = 32.8 bits (73), Expect = 4.1
Identities = 33/95 (34%), Positives = 45/95 (46%), Gaps = 8/95 (8%)
Frame = -3
Query: 582 LAKHLQLPP*RGRGDAP----TPQDHCPQAPKEQCQDTAL-RPRPCVPRPHAVGRAQYA* 418
++K QLP G +P PQ ++P + L +P+P RP G + A
Sbjct: 390 VSKMSQLPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQP---RPPPQGGPRQAQ 446
Query: 417 PKRPQLGGPPSQIHLRRQLQH---RSCGLSRQRRSPGETGLKR 298
+PQ G PSQ L Q Q G +Q+RSPG L R
Sbjct: 447 SPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSR 489
>emb|CAB62970.1| (Z82181) cE86D10.1 (synapsin III) [Homo sapiens]
Length = 171
Score = 32.8 bits (73), Expect = 4.1
Identities = 33/95 (34%), Positives = 45/95 (46%), Gaps = 8/95 (8%)
Frame = -3
Query: 582 LAKHLQLPP*RGRGDAP----TPQDHCPQAPKEQCQDTAL-RPRPCVPRPHAVGRAQYA* 418
++K QLP G +P PQ ++P + L +P+P RP G + A
Sbjct: 25 VSKMSQLPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQP---RPPPQGGPRQAQ 81
Query: 417 PKRPQLGGPPSQIHLRRQLQH---RSCGLSRQRRSPGETGLKR 298
+PQ G PSQ L Q Q G +Q+RSPG L R
Sbjct: 82 SPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSR 124
>pir||T01536 hypothetical protein A_IG005I10.20 - Arabidopsis thaliana
gb|AAB62839.1| (AF013293) contains regions of similarity to Haemophilus influenzae
permease (SP:P38767) [Arabidopsis thaliana]
gb|AAF02797.1|AF195115_17 (AF195115) contains regions of similarity to Haemophilus influenzae
permease (SP:P38767) [Arabidopsis thaliana]
emb|CAB80793.1| (AL161471) contains regions of similarity to Haemophilus influenzae
permease (SP:P38767), coded for by A. thaliana cDNA
H76622~similarity to~Contains Prokaryotic membrane
lipoprotein lipid attachment site AA731-741~contains EST
gb:AI995143.1, H76978, T>
Length = 746
Score = 32.1 bits (71), Expect = 7.1
Identities = 18/55 (32%), Positives = 27/55 (48%)
Frame = +3
Query: 279 EEYREATSSAPSLLGFVFVETDRKNDVEAGAADGSGWEGPLAEVSWVKRIALGQP 443
EE R+A + LLG + + V +G A G GW+ P+A ++ A G P
Sbjct: 402 EEMRKAVADLAYLLGITMI-LNSLQPVISGVAVGGGWQAPVAYINLFCYYAFGLP 455
>emb|CAB40407.1| (AJ010592) histone H2B [Guillardia theta]
Length = 102
Score = 32.1 bits (71), Expect = 7.1
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = -1
Query: 785 SSSGAPIVNTFEECDDLFKLLLSRAVLVTPIVKGETTTAKQLYTSIELVV 636
SS I+N+F +DLF+ L+S + ++ + +T TA+++ TS+ LV+
Sbjct: 32 SSKAMNIMNSF--VNDLFERLVSESYNLSNSSRSKTLTAREIQTSVRLVI 79
>emb|CAB91743.1| (AL356173) hypothetical protein [Neurospora crassa]
Length = 1176
Score = 32.1 bits (71), Expect = 7.1
Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 4/130 (3%)
Frame = +3
Query: 111 QLQPPYPSTAHPTANMS---DDQLILPIIDSHIHLYPASEVDSLSWYTPENPLAGQHSLE 281
Q PP S HPT+ + Q P I H H + P AG ++
Sbjct: 1001 QQPPPPASWGHPTSGPTLPPPQQARSPYIPPHAHHPQGPPPPAQPPTLPSISPAGTPRIK 1060
Query: 282 EYREATSSAPSLLGFVFVETDRKNDVEAGAADGSGWE-GPLAEVSWVKRIALGQPREGEG 458
S P L G + D K + G G G E GP + +S R A+ Q G G
Sbjct: 1061 S-EPGLPSLPPLGG----DRDDKRPIGLGIGGGGGGERGPASAISPSNRAAVLQSSVGGG 1115
Query: 459 HTAEDAKLCLGIVP 500
H A L + P
Sbjct: 1116 HGAGSPTLSVSRSP 1129
>gb|AAD51327.1|AF171937_1 (AF171937) glycoprotein gE [Pseudorabies virus Ea]
Length = 578
Score = 32.1 bits (71), Expect = 7.1
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = -3
Query: 492 CQDTALRP-----RPCVPRPHAVGRAQYA*PKRPQLGGPPSQIHLRRQLQHRSCGLSRQR 328
C +TA P R CVP +G Y P+ P+L P + R H LS R
Sbjct: 127 CFETACHPDLVLGRACVPEAPEMGIGDYLPPEVPRLRREPPIVTPERWSPH----LSVLR 182
Query: 327 RSPGETGL 304
+P +TGL
Sbjct: 183 ATPNDTGL 190
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233805226
Number of Sequences: 509459
Number of extensions: 5096605
Number of successful extensions: 17140
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 17137
Number of HSP's gapped (non-prelim): 12
length of query: 272
length of database: 159,777,284
effective HSP length: 55
effective length of query: 217
effective length of database: 131,757,039
effective search space: 28591277463
effective search space used: 28591277463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)