Score E
Sequences producing significant alignments: (bits) Value
ref|NP_014908.1| beta-tubulin binding protein; Rbl2p >gi|13... 50 2e-05
ref|NP_033347.1| tubulin cofactor a >gi|1351187|sp|P48428|T... 45 8e-04
sp|P80584|TBCA_RABIT TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-... 44 0.002
sp|P48427|TBCA_BOVIN TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-... 43 0.005
ref|NP_055568.1| KIAA0187 gene product >gi|1136434|dbj|BAA1... 42 0.009
sp|P80585|TBCA_CHICK TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-... 42 0.009
ref|NP_004598.1| beta-tubulin cofactor A; tubulin-specific ... 41 0.012
sp|O04350|TBCA_ARATH TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-... 39 0.045
pir||A45592 liver stage antigen LSA-1 - Plasmodium falcipar... 37 0.30
pir||T35661 probable chromosome associated protein - Strept... 36 0.68
sp|P28023|DYNA_RAT DYNACTIN, 150 KD ISOFORM (150 KD DYNEIN-... 36 0.68
pir||S16129 dynein-associated protein, 150K, cytosolic - bo... 36 0.68
ref|NP_014308.1| Ynl091wp >gi|1730751|sp|P53935|YNJ1_YEAST ... 35 1.2
dbj|BAA88350.1| (AB035736) myosin-Va [Rattus norvegicus] 35 1.2
pir||T29399 hypothetical protein C16C8.13 - Caenorhabditis ... 35 1.2
emb|CAA67333.1| (X98801) dynactin [Homo sapiens] 34 1.5
emb|CAA44617.2| (X62773) dynactin [Gallus gallus] 34 1.5
ref|NP_004073.1| dynactin 1 (p150, Glued (Drosophila) homol... 34 1.5
gb|AAD55423.1|AF181637_1 (AF181637) BcDNA.GH07910 [Drosophi... 34 1.5
sp|Q14203|DYNA_HUMAN DYNACTIN, 150 KDA ISOFORM (150 KDA DYN... 34 1.5
gb|AAF45892.1| (AE003428) BcDNA:GH07910 gene product [alt 1... 34 1.5
gb|AAF45893.1| (AE003428) BcDNA:GH07910 gene product [alt 2... 34 1.5
gb|AAD55812.1| (AF064205) dynactin 1 p135 isoform [Homo sap... 34 1.5
sp|P35458|DYNA_CHICK DYNACTIN, 117 KD ISOFORM >gi|104650|pi... 34 1.5
gb|AAD55811.1| (AF064205) dynactin 1 p150 isoform [Homo sap... 34 1.5
dbj|BAA21785.1| (D88828) chicken rabaptin-5 [Gallus gallus] 34 2.0
gb|AAF63253.1|AF203377_1 (AF203377) replication-associated ... 34 2.0
dbj|BAA23805.1| (D38038) neurocrescin [Gallus gallus] 34 2.0
pir||T30336 nuclear/mitotic apparatus protein - African cla... 34 2.0
gb|AAD03807.1| (AF047427) unknown [Pasteurella haemolytica] 34 2.0
pir||T18296 myosin heavy chain - Entamoeba histolytica >gi|... 34 2.0
emb|CAA82975.1| (Z30320) liver stage antigen-1 [Plasmodium ... 34 2.6
pir||G75062 probable flagella-related protein D or E PAB138... 34 2.6
ref|NP_031861.1| dynactin 1 >gi|3023674|sp|O08788|DYNA_MOUS... 33 3.4
ref|NP_034994.1| myosin Va >gi|547968|sp|Q99104|MY5A_MOUSE ... 33 3.4
prf||1705299A myosin H [Mus musculus] 33 3.4
emb|CAA62973.1| (X91867) CPC3 protein [Neurospora crassa] 33 3.4
pir||T13829 Tpr homolog - fruit fly (Drosophila melanogaste... 32 5.9
gb|AAF58615.1| (AE003824) Bx34 gene product [Drosophila mel... 32 5.9
gb|AAD38273.1|AC006193_29 (AC006193) Hypothetical protein [... 32 5.9
pir||B25345 troponin T, cardiac muscle, minor isoform - rabbit 32 5.9
pir||A25345 troponin T, cardiac muscle, major isoform - rabbit 32 5.9
pir||B69379 methyl-accepting chemotaxis protein (tlpC-1) ho... 32 5.9
pir||HSXL1B histone H1B - African clawed frog 32 7.7
pir||T03719 probable thyroid receptor interactor - human (f... 32 7.7
gb|AAF56934.1| (AE003771) CG15507 gene product [Drosophila ... 32 7.7
gb|AAB27731.1| (S64668) troponin T, TnT [human, heart, Pept... 32 7.7
sp|P06893|H1B_XENLA HISTONE H1B >gi|2118972|pir||I51447 his... 32 7.7
pir||T31504 hypothetical protein Y116A8C.36 - Caenorhabditi... 32 7.7
emb|CAA73095.1| (Y12490) Golgi-associated microtubule-bindi... 32 7.7
>ref|NP_014908.1| beta-tubulin binding protein; Rbl2p
sp|P48606|TBCA_YEAST TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-FOLDING COFACTOR A) (CFA)
pir||S64649 RBL2 protein - yeast (Saccharomyces cerevisiae)
pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
gb|AAB08525.1| (U30184) Rbl2p [Saccharomyces cerevisiae]
emb|CAA99488.1| (Z75173) ORF YOR265w [Saccharomyces cerevisiae]
Length = 106
Score = 50.4 bits (118), Expect = 2e-05
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +2
Query: 44 PSQLAIATGSVNRLLKEEASYHKELEQEEASIEALK--KKIDSGAGDSDENAPYILKQQQ 217
P+QL I ++ RL KEE Y +EL+ +EA + LK K +D PY LK+Q+
Sbjct: 3 PTQLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVD----------PYDLKKQE 52
Query: 218 TALEQTKGVFGPLREKIALGIEKLEEQL 301
L+ TK + L EKI E LE+ L
Sbjct: 53 EVLDDTKRLLPTLYEKIREFKEDLEQFL 80
>ref|NP_033347.1| tubulin cofactor a
sp|P48428|TBCA_MOUSE TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-FOLDING COFACTOR A) (CFA)
(TCP1-CHAPERONIN COFACTOR A)
pir||I48930 cofactor A - mouse
gb|AAA83250.1| (U05333) cofactor A [Mus musculus]
Length = 108
Score = 45.3 bits (105), Expect = 8e-04
Identities = 29/112 (25%), Positives = 54/112 (47%)
Frame = +2
Query: 38 PPPSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQ 217
P Q+ I TG V RL+KE Y KE +Q+E IE +K +++ Y +K+Q
Sbjct: 4 PRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMK---------AEDGENYAIKKQA 54
Query: 218 TALEQTKGVFGPLREKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAK 373
L++++ + + ++ L++ L L +E+ + A+ L + K
Sbjct: 55 EILQESRMMIPDCQRRLEAAYTDLQQILESEKDLEEAEEY-KEARVVLDSVK 105
>sp|P80584|TBCA_RABIT TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-FOLDING COFACTOR A) (CFA)
(TCP1-CHAPERONIN COFACTOR A)
Length = 107
Score = 44.1 bits (102), Expect = 0.002
Identities = 25/100 (25%), Positives = 49/100 (49%)
Frame = +2
Query: 38 PPPSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQ 217
P Q+ I TG V RL+KE+ Y KE +Q+E IE ++ +++ Y +K+Q
Sbjct: 3 PRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMR---------AEDGENYAIKKQA 53
Query: 218 TALEQTKGVFGPLREKIALGIEKLEEQLAVSDQLNVPDEH 337
L++++ + + ++ L++ L L +E+
Sbjct: 54 EILQESRMMIPDCQRRLEAACTDLQQILESEKDLEEAEEY 93
>sp|P48427|TBCA_BOVIN TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-FOLDING COFACTOR A) (CFA)
(TCP1-CHAPERONIN COFACTOR A)
emb|CAA65861.1| (X97224) cofactor A [Bos taurus]
Length = 108
Score = 42.6 bits (98), Expect = 0.005
Identities = 26/100 (26%), Positives = 48/100 (48%)
Frame = +2
Query: 38 PPPSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQ 217
P Q+ I TG V RL+KE+ Y KE +Q+E IE +K +++ Y +K+Q
Sbjct: 4 PRVRQIKIKTGVVKRLVKEKMMYEKEAKQQEEKIEKMK---------AEDGENYAIKKQA 54
Query: 218 TALEQTKGVFGPLREKIALGIEKLEEQLAVSDQLNVPDEH 337
L++++ + + ++ L + L L +E+
Sbjct: 55 EILQESRMMIPDCQRRLEAAHTDLLQLLESEKDLEEAEEY 94
>ref|NP_055568.1| KIAA0187 gene product
dbj|BAA11504.1| (D80009) KIAA0187 [Homo sapiens]
Length = 1282
Score = 41.8 bits (96), Expect = 0.009
Identities = 31/106 (29%), Positives = 47/106 (44%)
Frame = +2
Query: 44 PSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTA 223
P T + LLKEE Y +E + + ALK K D S + A L+QQQ A
Sbjct: 631 PQNFIDETSDIENLLKEEEDYKEENNDSKETSGALKWKEDL----SRKAAEAFLRQQQAA 686
Query: 224 LEQTKGVFGPLREKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETL 361
K ++G + E + E+L ++N PD +H ++L
Sbjct: 687 PNLRKLIYGTVTEDNEEEDDDTLEELGGLFRVNQPDRECKHKADSL 732
>sp|P80585|TBCA_CHICK TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-FOLDING COFACTOR A) (CFA)
(TCP1-CHAPERONIN COFACTOR A)
Length = 107
Score = 41.8 bits (96), Expect = 0.009
Identities = 29/112 (25%), Positives = 54/112 (47%)
Frame = +2
Query: 38 PPPSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQ 217
P Q+ I TG V RL KE+ Y KE +Q+E IE +K ++ Y +K+Q
Sbjct: 3 PRLRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMK---------AEACDDYGIKKQA 53
Query: 218 TALEQTKGVFGPLREKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAK 373
L++++ + + ++ + L + L +L +E+ + A+ L + K
Sbjct: 54 EILQESRMMIPDCQRRLEIAHADLTQLLENEKELEEAEEY-KEARSILESVK 104
>ref|NP_004598.1| beta-tubulin cofactor A; tubulin-specific chaperone a
sp|O75347|TBCA_HUMAN TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-FOLDING COFACTOR A) (CFA)
(TCP1-CHAPERONIN COFACTOR A)
gb|AAC39866.1| (AF038952) cofactor A protein [Homo sapiens]
Length = 108
Score = 41.4 bits (95), Expect = 0.012
Identities = 25/100 (25%), Positives = 48/100 (48%)
Frame = +2
Query: 38 PPPSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQ 217
P Q+ I TG V RL+KE+ Y KE +Q+E IE ++ +++ Y +K+Q
Sbjct: 4 PRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMR---------AEDGENYDIKKQA 54
Query: 218 TALEQTKGVFGPLREKIALGIEKLEEQLAVSDQLNVPDEH 337
L++++ + + ++ L+ L L +E+
Sbjct: 55 EILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEY 94
>sp|O04350|TBCA_ARATH TUBULIN-SPECIFIC CHAPERONE A (TUBULIN-FOLDING COFACTOR A) (CFA)
(TCP1-CHAPERONIN COFACTOR A HOMOLOG)
gb|AAB63093.1| (U93215) putative TCP1-chaperonin cofactor A [Arabidopsis thaliana]
Length = 101
Score = 39.5 bits (90), Expect = 0.045
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +2
Query: 53 LAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQ 232
L I T + R++KE SY KE+E+E A +K D GA PY LKQQ+ L +
Sbjct: 7 LKIKTSTCKRIVKELHSYEKEVEREAAKTADMK---DKGAD------PYDLKQQENVLGE 57
Query: 233 TKGVFGPLREKIALGIEKLEEQL 301
++ + +++ + L+ L
Sbjct: 58 SRMMIPDCHKRLESALADLKSTL 80
>pir||A45592 liver stage antigen LSA-1 - Plasmodium falciparum
emb|CAA39663.1| (X56203) liver stage antigen [Plasmodium falciparum]
Length = 1909
Score = 36.7 bits (83), Expect = 0.30
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Frame = +2
Query: 77 NRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPL 256
N L+E+ ++LEQE + E L+++ + + A L++QQ+ LEQ + L
Sbjct: 1532 NEKLQEQ---QRDLEQERRAKEKLQEQ--QSDLEQERRAKEKLQEQQSDLEQERRAKEKL 1586
Query: 257 REKIA------LGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTDALYRVRKH 412
+E+ + L EKL+EQ +Q + E +Q + L KA L R ++H
Sbjct: 1587 QEQQSDLEQERLAKEKLQEQQRDLEQERLAKEKLQEQQRDLEQRKADTKKNLERKKEH 1644
Score = 33.2 bits (74), Expect = 3.4
Identities = 30/101 (29%), Positives = 54/101 (52%), Gaps = 7/101 (6%)
Frame = +2
Query: 80 RLLKEEASYHK-ELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPL 256
RL KE+ + +LEQE + E L+++ + + A L++QQ+ LEQ + L
Sbjct: 441 RLAKEKLQEQQSDLEQERRAKEKLQEQ--QSDLEQERRAKEKLQEQQSDLEQERLAKEKL 498
Query: 257 REKIA------LGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATR 382
+E+ + L EKL+EQ + S+Q + E +Q + L + +
Sbjct: 499 QEQQSDLEQERLAKEKLQEQQSDSEQERLAKEKLQEQQSDLEQERLAK 546
Score = 32.1 bits (71), Expect = 7.7
Identities = 23/99 (23%), Positives = 51/99 (51%)
Frame = +2
Query: 86 LKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREK 265
L++E ++L+++++ +E + + G + L+Q++ A E+ +G L ++
Sbjct: 573 LEQERLAKEKLQEQQSDLEQERLAKEKLQGQQSD-----LEQERLAKEKLQGQQSDLEQE 627
Query: 266 IALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATR 382
L EKL+EQ + +Q + E +Q + L KA++
Sbjct: 628 -RLAKEKLQEQQSDLEQERLAKEKLQEQQSDLERTKASK 665
>pir||T35661 probable chromosome associated protein - Streptomyces coelicolor
emb|CAA22420.1| (AL034447) putative chromosome associated protein [Streptomyces
coelicolor A3(2)]
Length = 1186
Score = 35.6 bits (80), Expect = 0.68
Identities = 31/117 (26%), Positives = 59/117 (49%), Gaps = 7/117 (5%)
Frame = +2
Query: 83 LLKEEASYHKELEQEEASIEALKKKIDS---GAGDSDENAPYILKQQQTALEQTKGVFGP 253
L++E + ++E++S+ ++ GA E + ++ Q AL+
Sbjct: 695 LVEELGERRRAADREKSSVAQQLGRLAGQARGAAGEAERSAAAAERAQEALD-------- 746
Query: 254 LREKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLA----NAKATRTDALYRVRKHRGR 421
K +E+L E+LAV++++ V +E A++ LA NA+ T +A +VR H R
Sbjct: 747 ---KALTEVEELAERLAVAEEMPVEEEPDTAARDRLAADGANARQTEMEARLQVRTHEER 803
Query: 422 EQWL 433
+ L
Sbjct: 804 VKGL 807
>sp|P28023|DYNA_RAT DYNACTIN, 150 KD ISOFORM (150 KD DYNEIN-ASSOCIATED POLYPEPTIDE)
(DP-150) (DAP-150) (P150-GLUED)
emb|CAA44091.1| (X62160) 150K dynein-associated polypeptide [Rattus norvegicus]
Length = 1280
Score = 35.6 bits (80), Expect = 0.68
Identities = 22/71 (30%), Positives = 40/71 (55%), Gaps = 4/71 (5%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYI---LKQQQTALEQTKGVFGPLREKIALGI 280
+EL + + L+KK+DS A D+DE + L++ QT L + + F + + I
Sbjct: 963 EELSEANVRLSLLEKKLDSAAKDADERIEKVQTRLEETQTLLRKKEKEFEETMDALQADI 1022
Query: 281 EKLE-EQLAVSDQLN 322
++LE E+ + +LN
Sbjct: 1023 DQLEAEKTELKQRLN 1037
>pir||S16129 dynein-associated protein, 150K, cytosolic - bovine
prf||1712318A dynein-associated protein [Bos taurus]
Length = 1325
Score = 35.6 bits (80), Expect = 0.68
Identities = 22/71 (30%), Positives = 40/71 (55%), Gaps = 4/71 (5%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYI---LKQQQTALEQTKGVFGPLREKIALGI 280
+EL + + L+KK+DS A D+DE + L++ QT L + + F + + I
Sbjct: 962 EELSEANVRLSLLEKKLDSAAKDADERIEKVQTRLEETQTLLRKKEKEFEETMDALQADI 1021
Query: 281 EKLE-EQLAVSDQLN 322
++LE E+ + +LN
Sbjct: 1022 DQLEAEKTELKQRLN 1036
>ref|NP_014308.1| Ynl091wp
sp|P53935|YNJ1_YEAST HYPOTHETICAL 141.5 KD PROTEIN IN YPT53-RHO2 INTERGENIC REGION
pir||S52734 hypothetical protein YNL091w - yeast (Saccharomyces cerevisiae)
emb|CAA59826.1| (X85811) ORF N2231 [Saccharomyces cerevisiae]
emb|CAA95967.1| (Z71367) ORF YNL091w [Saccharomyces cerevisiae]
Length = 1240
Score = 34.8 bits (78), Expect = 1.2
Identities = 31/113 (27%), Positives = 52/113 (45%), Gaps = 1/113 (0%)
Frame = +2
Query: 89 KEEASYHKELEQEEASI-EALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREK 265
+E+ KELE+ E EA +KK++ DE L++QQ E + ++K
Sbjct: 672 EEKERLKKELEEREMRRREAQRKKVEEAKRKKDEERKRRLEEQQRREEMQE---KQRKQK 728
Query: 266 IALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTDALYRVRKHRGREQ 427
L ++ EE+ + +Q + E +Q KE + DAL RK + E+
Sbjct: 729 EELKRKREEEKKRIREQKRLEQEKLQKEKEEEERQRLIAEDAL---RKQKLNEE 779
>dbj|BAA88350.1| (AB035736) myosin-Va [Rattus norvegicus]
Length = 1828
Score = 34.8 bits (78), Expect = 1.2
Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Frame = +2
Query: 59 IATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTK 238
+ATG V L +E A K+LEQ + ++++++ D ++++ LK++ T L+Q K
Sbjct: 980 VATGRVLSLQEEIAKLRKDLEQTRSEKKSIEERADKYKQETEQLVSN-LKEENTLLKQEK 1038
Query: 239 GVFGPLREKIALGIEKLEEQLAVSD----QLNVPDEHVQH 346
L + A + + E+ V + +L++ DE +++
Sbjct: 1039 ETLNHLMVEQAKEMTETMERKLVEETKQLELDLNDERLRY 1078
>pir||T29399 hypothetical protein C16C8.13 - Caenorhabditis elegans
gb|AAB37855.1| (U80452) weak similarity to ubiquitin [Caenorhabditis elegans]
Length = 244
Score = 34.8 bits (78), Expect = 1.2
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 80 RLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQ 217
++LK + YH E++QE I+A + K+ +SD+N +LK Q+
Sbjct: 89 QILKRQDEYHDEMKQEFQKIQATQNKLIEDLMNSDKNLEMMLKIQE 134
>emb|CAA67333.1| (X98801) dynactin [Homo sapiens]
Length = 1263
Score = 34.4 bits (77), Expect = 1.5
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREKIALGIEKL 289
+EL + + L+KK+DS A D+DE +++ QT LE+T+ + LR+K E +
Sbjct: 949 EELSEANVRLSLLEKKLDSAAKDADER----IEKVQTRLEETQAL---LRKKEKEFEETM 1001
Query: 290 EEQLAVSDQL 319
+ A DQL
Sbjct: 1002 DALQADIDQL 1011
>emb|CAA44617.2| (X62773) dynactin [Gallus gallus]
Length = 1224
Score = 34.4 bits (77), Expect = 1.5
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYI---LKQQQTALEQTKGVFGPLREKIALGI 280
+EL + + L+KK+DS + D+D+ I L + QT L++ + F + + I
Sbjct: 957 EELSEANVRLSLLEKKLDSASKDADDRVEKIQTKLDETQTLLKKKEKEFEETMDALQADI 1016
Query: 281 EKLE-EQLAVSDQLN 322
++LE E++ + +LN
Sbjct: 1017 DQLESEKVELKQRLN 1031
>ref|NP_004073.1| dynactin 1 (p150, Glued (Drosophila) homolog)
gb|AAD03694.1| (AF086947) dynactin 1 [Homo sapiens]
Length = 1261
Score = 34.4 bits (77), Expect = 1.5
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREKIALGIEKL 289
+EL + + L+KK+DS A D+DE +++ QT LE+T+ + LR+K E +
Sbjct: 947 EELSEANVRLSLLEKKLDSAAKDADER----IEKVQTRLEETQAL---LRKKEKEFEETM 999
Query: 290 EEQLAVSDQL 319
+ A DQL
Sbjct: 1000 DALQADIDQL 1009
>gb|AAD55423.1|AF181637_1 (AF181637) BcDNA.GH07910 [Drosophila melanogaster]
Length = 1266
Score = 34.4 bits (77), Expect = 1.5
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +2
Query: 38 PPPSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQ 217
PPP + A + ++ + E S H EL++ EA E+ K K+D SDE I+ Q+
Sbjct: 546 PPPMAMPAAIITYSKATQTEVSLH-ELQEREAEHESGKVKLDEMTRLSDEQKSQIVGNQK 604
Query: 218 T 220
T
Sbjct: 605 T 605
>sp|Q14203|DYNA_HUMAN DYNACTIN, 150 KDA ISOFORM (150 KDA DYNEIN-ASSOCIATED POLYPEPTIDE)
(DP-150) (DAP-150) (P150-GLUED) (P135)
Length = 1270
Score = 34.4 bits (77), Expect = 1.5
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREKIALGIEKL 289
+EL + + L+KK+DS A D+DE +++ QT LE+T+ + LR+K E +
Sbjct: 956 EELSEANVRLSLLEKKLDSAAKDADER----IEKVQTRLEETQAL---LRKKEKEFEETM 1008
Query: 290 EEQLAVSDQL 319
+ A DQL
Sbjct: 1009 DALQADIDQL 1018
>gb|AAF45892.1| (AE003428) BcDNA:GH07910 gene product [alt 1] [Drosophila
melanogaster]
Length = 1168
Score = 34.4 bits (77), Expect = 1.5
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +2
Query: 38 PPPSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQ 217
PPP + A + ++ + E S H EL++ EA E+ K K+D SDE I+ Q+
Sbjct: 534 PPPMAMPAAIITYSKATQTEVSLH-ELQEREAEHESGKVKLDEMTRLSDEQKSQIVGNQK 592
Query: 218 T 220
T
Sbjct: 593 T 593
>gb|AAF45893.1| (AE003428) BcDNA:GH07910 gene product [alt 2] [Drosophila
melanogaster]
Length = 1156
Score = 34.4 bits (77), Expect = 1.5
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +2
Query: 38 PPPSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQ 217
PPP + A + ++ + E S H EL++ EA E+ K K+D SDE I+ Q+
Sbjct: 522 PPPMAMPAAIITYSKATQTEVSLH-ELQEREAEHESGKVKLDEMTRLSDEQKSQIVGNQK 580
Query: 218 T 220
T
Sbjct: 581 T 581
>gb|AAD55812.1| (AF064205) dynactin 1 p135 isoform [Homo sapiens]
Length = 1144
Score = 34.4 bits (77), Expect = 1.5
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREKIALGIEKL 289
+EL + + L+KK+DS A D+DE +++ QT LE+T+ + LR+K E +
Sbjct: 830 EELSEANVRLSLLEKKLDSAAKDADER----IEKVQTRLEETQAL---LRKKEKEFEETM 882
Query: 290 EEQLAVSDQL 319
+ A DQL
Sbjct: 883 DALQADIDQL 892
>sp|P35458|DYNA_CHICK DYNACTIN, 117 KD ISOFORM
pir||A41642 dynactin - chicken
Length = 1053
Score = 34.4 bits (77), Expect = 1.5
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYI---LKQQQTALEQTKGVFGPLREKIALGI 280
+EL + + L+KK+DS + D+D+ I L + QT L++ + F + + I
Sbjct: 786 EELSEANVRLSLLEKKLDSASKDADDRVEKIQTKLDETQTLLKKKEKEFEETMDALQADI 845
Query: 281 EKLE-EQLAVSDQLN 322
++LE E++ + +LN
Sbjct: 846 DQLESEKVELKQRLN 860
>gb|AAD55811.1| (AF064205) dynactin 1 p150 isoform [Homo sapiens]
Length = 1278
Score = 34.4 bits (77), Expect = 1.5
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREKIALGIEKL 289
+EL + + L+KK+DS A D+DE +++ QT LE+T+ + LR+K E +
Sbjct: 964 EELSEANVRLSLLEKKLDSAAKDADER----IEKVQTRLEETQAL---LRKKEKEFEETM 1016
Query: 290 EEQLAVSDQL 319
+ A DQL
Sbjct: 1017 DALQADIDQL 1026
>dbj|BAA21785.1| (D88828) chicken rabaptin-5 [Gallus gallus]
Length = 860
Score = 34.0 bits (76), Expect = 2.0
Identities = 27/104 (25%), Positives = 48/104 (45%)
Frame = +2
Query: 77 NRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPL 256
+R+ +E A +++ E E I L++++ +EN +K+ Q E+ + V P+
Sbjct: 134 HRMEQERAQWNQYRENVEREIAELRRRLSEA--QEEENLENEMKKAQEDAEKLRSVVMPM 191
Query: 257 REKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTD 388
++IA EKL E +L V+ L K+ RTD
Sbjct: 192 EKEIAALKEKLIEAEEKIKELEA--SKVKELNHYLEAEKSCRTD 233
>gb|AAF63253.1|AF203377_1 (AF203377) replication-associated protein [Staphylococcus aureus]
Length = 256
Score = 34.0 bits (76), Expect = 2.0
Identities = 28/105 (26%), Positives = 46/105 (43%)
Frame = +2
Query: 74 VNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGP 253
VN L K+ + + +E IE L K++D + + + QQ ALE K
Sbjct: 93 VNELEKQIEIFETRAKNDEKYIENLTKQLDQQNSNVNTLNKLLENQQILALESNKK---- 148
Query: 254 LREKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTD 388
I+KLE QL QLN + + ++++ +AT T+
Sbjct: 149 --------IQKLENQLEEERQLNYSFDTATNDRQSINPQEATFTE 185
>dbj|BAA23805.1| (D38038) neurocrescin [Gallus gallus]
Length = 782
Score = 34.0 bits (76), Expect = 2.0
Identities = 27/104 (25%), Positives = 48/104 (45%)
Frame = +2
Query: 77 NRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPL 256
+R+ +E A +++ E E I L++++ +EN +K+ Q E+ + V P+
Sbjct: 56 HRMEQERAQWNQYRENVEREIAELRRRLSEA--QEEENLENEMKKAQEDAEKLRSVVMPM 113
Query: 257 REKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTD 388
++IA EKL E +L V+ L K+ RTD
Sbjct: 114 EKEIAALKEKLIEAEEKIKELEA--SKVKELNHYLEAEKSCRTD 155
>pir||T30336 nuclear/mitotic apparatus protein - African clawed frog
emb|CAA68905.1| (Y07624) nuclear/mitotic apparatus protein [Xenopus laevis]
Length = 2253
Score = 34.0 bits (76), Expect = 2.0
Identities = 27/105 (25%), Positives = 54/105 (50%)
Frame = +2
Query: 101 SYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREKIALGI 280
S +L ++E+ ++ +KK+ S S+EN+ LK Q ++E++ LRE +
Sbjct: 670 SLKAQLSEQESQLKIYRKKVSSNELVSEENSK--LKDQLLSVEES---LRHLREH----L 720
Query: 281 EKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTDALYRVRKHR 415
EK + + A S L+ + + H +E + +R +AL+ + + R
Sbjct: 721 EKEKTKFAAS--LDADLKRISHLEEEMKKLSESRDEALHNLDEER 763
>gb|AAD03807.1| (AF047427) unknown [Pasteurella haemolytica]
Length = 326
Score = 34.0 bits (76), Expect = 2.0
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Frame = +2
Query: 11 QIASIYFTMPPPSQLA-IATGSVNRLLKEEASYH--KELEQEEASIEALKKKIDSGAGDS 181
+IA IY PP SQLA +ATG + L+K++ YH + E++ E L K ++
Sbjct: 206 EIAYIY---PPKSQLAPLATGERDSLVKQDDLYHHYSQYVDNESAFELLNAKAEA----- 257
Query: 182 DENAPYILKQQQTALEQTKGVFGPLREKIALGIEKLEEQLAVSDQL 319
I +Q A E FG + I G +K ++Q ++++Q+
Sbjct: 258 ------IKAEQAAAEEANNDFFGGILSSI-FGSKKKKDQ-SITEQV 295
>pir||T18296 myosin heavy chain - Entamoeba histolytica
gb|AAB48065.1| (L03534) myosin heavy chain [Entamoeba histolytica]
Length = 2139
Score = 34.0 bits (76), Expect = 2.0
Identities = 31/117 (26%), Positives = 52/117 (43%), Gaps = 3/117 (2%)
Frame = +2
Query: 62 ATGSVNRLLKEEASYHKELEQEEASIEAL---KKKIDSGAGDSDENAPYILKQQQTALEQ 232
A L K++A KEL +A +EAL K ++S DS+ + ++ A E+
Sbjct: 1307 AVADAELLNKKKAQSDKELNSLKAELEALTKAKSVVESKNKDSENEKAALSEEIDQANEK 1366
Query: 233 TKGVFGPLREKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTDALYRVRKH 412
K + LR+ A E E++ V Q + + +TL KA + Y+V +
Sbjct: 1367 LKNIQADLRKATADLQEANEKKAEVEAQRDKLVADNKKMTKTLEEIKARDEENTYKVENY 1426
>emb|CAA82975.1| (Z30320) liver stage antigen-1 [Plasmodium falciparum]
Length = 493
Score = 33.6 bits (75), Expect = 2.6
Identities = 30/109 (27%), Positives = 58/109 (52%), Gaps = 11/109 (10%)
Frame = +2
Query: 86 LKEEASYHKELEQEEASIEA---LKKKIDSGAGDSDEN--APYILKQQQTALEQTKGVFG 250
L++E ++L+++++ +E K+K+ D ++ A L++QQ+ LEQ +
Sbjct: 109 LEQERRAKEKLQEQQSDLEQERRAKEKLQEQQSDLEQERLAKEKLQEQQSDLEQERRAKE 168
Query: 251 PLREKIA------LGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTDALYRVRKH 412
L+E+ + EKL+EQ + +Q E +Q + L KA L R ++H
Sbjct: 169 KLQEQQSDLEQERRAKEKLQEQQSDLEQERRAKEKLQEQQRDLEQRKADTKKNLERKKEH 228
>pir||G75062 probable flagella-related protein D or E PAB1382 - Pyrococcus
abyssi (strain Orsay)
emb|CAB50396.1| (AJ248287) PUTATIVE FLAGELLA-RELATED PROTEIN D or E [Pyrococcus
abyssi]
Length = 419
Score = 33.6 bits (75), Expect = 2.6
Identities = 24/84 (28%), Positives = 46/84 (54%)
Frame = +2
Query: 89 KEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREKI 268
+E K+LE+ +EAL++KI AG+ E A +++ + +E+ + V ++
Sbjct: 130 EERPEIVKKLEEIHEKVEALEEKI---AGEKLEEAKKRVEELEEKIEKGEEVTAEEVSEL 186
Query: 269 ALGIEKLEEQLAVSDQLNVPDEHV 340
A +E LEE+ +++ VP+E V
Sbjct: 187 AEKVEALEEEAKKPEEV-VPEEEV 209
>ref|NP_031861.1| dynactin 1
sp|O08788|DYNA_MOUSE DYNACTIN, 150 KD ISOFORM (150 KD DYNEIN-ASSOCIATED POLYPEPTIDE)
(DP-150) (DAP-150) (P150-GLUED) (DYNACTIN 1)
pir||JC5368 dynactin 1 - mouse
gb|AAB57773.1| (U60312) dynactin1 [Mus musculus]
Length = 1281
Score = 33.2 bits (74), Expect = 3.4
Identities = 22/71 (30%), Positives = 38/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 110 KELEQEEASIEALKKKIDSGAGDSDENAPYI---LKQQQTALEQTKGVFGPLREKIALGI 280
+EL + L+KK+DS A D+DE + L + QT L + + F + + I
Sbjct: 964 EELSEANVRXSLLEKKLDSAAKDADERIEKVQTRLDETQTLLRKKEKDFEETMDALQADI 1023
Query: 281 EKLE-EQLAVSDQLN 322
++LE E+ + +LN
Sbjct: 1024 DQLEAEKAELKQRLN 1038
>ref|NP_034994.1| myosin Va
sp|Q99104|MY5A_MOUSE DILUTE MYOSIN HEAVY CHAIN, NON-MUSCLE (MYOSIN 5A)
pir||A46761 myosin heavy chain, dilute - mouse
emb|CAA40651.1| (X57377) myosin heavy chain [Mus musculus]
Length = 1853
Score = 33.2 bits (74), Expect = 3.4
Identities = 19/60 (31%), Positives = 35/60 (57%)
Frame = +2
Query: 59 IATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTK 238
+ATG V L +E A K+LEQ + ++++++ D ++D+ LK++ T L+Q K
Sbjct: 980 VATGRVLSLQEEIAKLRKDLEQTRSEKKSIEERADKYKQETDQLVSN-LKEENTLLKQEK 1038
>prf||1705299A myosin H [Mus musculus]
Length = 1852
Score = 33.2 bits (74), Expect = 3.4
Identities = 19/60 (31%), Positives = 35/60 (57%)
Frame = +2
Query: 59 IATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTK 238
+ATG V L +E A K+LEQ + ++++++ D ++D+ LK++ T L+Q K
Sbjct: 979 VATGRVLSLQEEIAKLRKDLEQTRSEKKSIEERADKYKQETDQLVSN-LKEENTLLKQEK 1037
>emb|CAA62973.1| (X91867) CPC3 protein [Neurospora crassa]
Length = 1646
Score = 33.2 bits (74), Expect = 3.4
Identities = 31/90 (34%), Positives = 45/90 (49%), Gaps = 18/90 (20%)
Frame = +2
Query: 5 EDQIASIYFTMPPPS------QLAIATGSVNRLLKEEASYHKELEQEEASIEALKK---- 154
E I ++Y P S LA+ V K+ A + K+L+ E+ +E LKK
Sbjct: 282 EGPITTVYKVKPVLSARTVRPSLALKQVEVKSHGKDSAQFKKQLQYLESQMETLKKLRHQ 341
Query: 155 --------KIDSGAGDSDENAPYILKQQQTALEQTKGVFGPLREKIAL 274
+ID G D+D +AP I TK GP+ E + L
Sbjct: 342 NLLPFLDFRIDRGISDTDSSAPTIWTVSILTPLATK---GPIEELLDL 386
>pir||T13829 Tpr homolog - fruit fly (Drosophila melanogaster)
gb|AAC47506.1| (U91980) Tpr homolog [Drosophila melanogaster]
Length = 2346
Score = 32.5 bits (72), Expect = 5.9
Identities = 30/114 (26%), Positives = 47/114 (40%)
Frame = +2
Query: 47 SQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTAL 226
S+L + S+ L A +ELE IE LK ++ S + E+AP + KQ
Sbjct: 379 SRLIRSDLSLTELYSMYAKSSEELEMRNCEIEQLKLQLKSIIAEISESAPILEKQNSDYQ 438
Query: 227 EQTKGVFGPLREKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTD 388
+ + LRE E L+ +L + +L + H + K T TD
Sbjct: 439 KMKETNSELLREH----DELLQNKLCLERELERALSTLNHNQNENKKLKQTHTD 488
>gb|AAF58615.1| (AE003824) Bx34 gene product [Drosophila melanogaster]
Length = 2346
Score = 32.5 bits (72), Expect = 5.9
Identities = 30/114 (26%), Positives = 47/114 (40%)
Frame = +2
Query: 47 SQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTAL 226
S+L + S+ L A +ELE IE LK ++ S + E+AP + KQ
Sbjct: 379 SRLIRSDLSLTELYSMYAKSSEELEMRNCEIEQLKLQLKSIIAEISESAPILEKQNSDYQ 438
Query: 227 EQTKGVFGPLREKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTD 388
+ + LRE E L+ +L + +L + H + K T TD
Sbjct: 439 KMKETNSELLREH----DELLQNKLCLERELERALSTLNHNQNENKKLKQTHTD 488
>gb|AAD38273.1|AC006193_29 (AC006193) Hypothetical protein [Arabidopsis thaliana]
Length = 1313
Score = 32.5 bits (72), Expect = 5.9
Identities = 27/91 (29%), Positives = 47/91 (50%), Gaps = 15/91 (16%)
Frame = +2
Query: 104 YHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTAL---------------EQTK 238
Y K LE I++LK +DS + EN+ +Q++ L E+
Sbjct: 473 YEKMLEDARNEIDSLKSTVDSIQNEF-ENSKAGWEQKELHLMGCVKKSEEENSSSQEEVS 531
Query: 239 GVFGPLREKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKA 376
+ L+E + EE+ ++ + L V + V++ +ETL AKA
Sbjct: 532 RLVNLLKESEEDACARKEEEASLKNNLKVAEGEVKYLQETLGEAKA 577
>pir||B25345 troponin T, cardiac muscle, minor isoform - rabbit
Length = 276
Score = 32.5 bits (72), Expect = 5.9
Identities = 31/113 (27%), Positives = 51/113 (44%)
Frame = +2
Query: 77 NRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPL 256
NRL +E A +E + +A +A KKK + YI KQ QT E+ K +
Sbjct: 147 NRLAEERARREEEESRRKAEDDARKKK---ALSNMMHFGGYIQKQAQTEREKKKKILAER 203
Query: 257 REKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTDALYRVRKHR 415
R+ L I+ L E DQL E + +++ N +A + D + ++ +
Sbjct: 204 RK--VLAIDHLNE-----DQLR---EKAKELWQSIYNLEAEKFDLQEKFKQQK 246
>pir||A25345 troponin T, cardiac muscle, major isoform - rabbit
Length = 276
Score = 32.5 bits (72), Expect = 5.9
Identities = 31/113 (27%), Positives = 51/113 (44%)
Frame = +2
Query: 77 NRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPL 256
NRL +E A +E + +A +A KKK + YI KQ QT E+ K +
Sbjct: 147 NRLAEERARREEEESRRKAEDDARKKK---ALSNMMHFGGYIQKQAQTEREKKKKILAER 203
Query: 257 REKIALGIEKLEEQLAVSDQLNVPDEHVQHAKETLANAKATRTDALYRVRKHR 415
R+ L I+ L E DQL E + +++ N +A + D + ++ +
Sbjct: 204 RK--VLAIDHLNE-----DQLR---EKAKELWQSIYNLEAEKFDLQEKFKQQK 246
>pir||B69379 methyl-accepting chemotaxis protein (tlpC-1) homolog -
Archaeoglobus fulgidus
gb|AAB90209.1| (AE001032) methyl-accepting chemotaxis protein (tlpC-1)
[Archaeoglobus fulgidus]
Length = 677
Score = 32.5 bits (72), Expect = 5.9
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Frame = +2
Query: 68 GSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVF 247
G++NR+ + + E+ A IE L + + A ++ENA + EQT V
Sbjct: 568 GAINRINDMVKAVASKAEEGLAKIEQLARNFEEVASTAEENAASSEETSAAIEEQTAAV- 626
Query: 248 GPLREKIALGIEKLEEQLAVSDQLNVPDEHVQHA--KETLANAKATRTDALYRVR 406
+++++ +EK+ E + Q + + + A ++ A+ T TD RVR
Sbjct: 627 ----QQVSIAMEKVNEIANATLQTIIENFRIFDALGQDISASYAKTMTDGGRRVR 677
>pir||HSXL1B histone H1B - African clawed frog
Length = 219
Score = 32.1 bits (71), Expect = 7.7
Identities = 34/101 (33%), Positives = 48/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 71 SVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFG 250
S + L+ + S KE + S+ ALKK + +G D D+N LK AL TKG
Sbjct: 42 SASELIVKAVSSSKE--RSGVSLAALKKALAAGGYDVDKNNSR-LKLALKAL-VTKGTLT 97
Query: 251 PLREKIALGIEKL-EEQLAVSDQLNVPDEHVQHAKETLANAK 373
++ A G KL ++QL D+ AK+T A AK
Sbjct: 98 QVKGSGASGSFKLNKKQLETKDKAAKKKPAAPKAKKTAAGAK 139
>pir||T03719 probable thyroid receptor interactor - human (fragment)
gb|AAB84386.1| (AF011368) CEV14 [Homo sapiens]
Length = 761
Score = 32.1 bits (71), Expect = 7.7
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Frame = +2
Query: 77 NRLLKEEASYHKELEQEEASIEALKKKIDS------GAGDSDENAPYILKQQQTALEQTK 238
N LL+ E SY +E E L+KK+ + ++ ENA + Q +L++
Sbjct: 399 NHLLESEDSYTREALAAEDREAKLRKKVTVLEEKLVSSSNAMENASHQASVQVESLQEQL 458
Query: 239 GVFGPLREKIALGIEKLEEQL---AVS-DQLNVPDEHVQHAKETLANAKATRTDAL 394
V R++ AL + +EQ+ A+S L + EH Q ++ + +A+ + L
Sbjct: 459 NVVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQKQL 514
>gb|AAF56934.1| (AE003771) CG15507 gene product [Drosophila melanogaster]
Length = 210
Score = 32.1 bits (71), Expect = 7.7
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 290 EEQLAVSDQLNVPDEHVQHAKETLANAKATRTDALYRVRKHRGREQWLYDCCSYDDRRHT 469
+ Q + QLN PD + A T NA +R +A+ ++++ + R W+ DC + + H
Sbjct: 33 QHQQQLQQQLNSPDNNYIWA--TTHNANISRNNAMLQLQQQQLRAPWITDC---NKQHHI 87
Query: 470 NH 475
N+
Sbjct: 88 NN 89
>gb|AAB27731.1| (S64668) troponin T, TnT [human, heart, Peptide, 288 aa] [Homo
sapiens]
gb|AAC39590.1| (AF004422) troponin T [Homo sapiens]
prf||1919265A troponin T [Homo sapiens]
Length = 288
Score = 32.1 bits (71), Expect = 7.7
Identities = 36/113 (31%), Positives = 55/113 (47%), Gaps = 3/113 (2%)
Frame = +2
Query: 77 NRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFGPL 256
NRL +E A +E + +A EA KKK + YI KQ QT E+ G
Sbjct: 150 NRLAEERARREEEENRRKAEDEARKKK---ALSNMMHFGGYIQKQAQT--ERKSGKRQTE 204
Query: 257 REKIALGIEKLEEQLAVSDQLNVPDEHVQHAKE---TLANAKATRTDALYRVRKHR 415
REK + + + LA+ D LN D+ + AKE T+ N +A + D + ++ +
Sbjct: 205 REKKKKILAERRKVLAI-DHLN-EDQLREKAKELWQTIYNLEAEKFDLQEKFKQQK 258
>sp|P06893|H1B_XENLA HISTONE H1B
pir||I51447 histone H1B - African clawed frog
emb|CAA26812.1| (X03017) H1B (aa 1-330) [Xenopus laevis]
gb|AAA49764.1| (M21286) histone H1B [Xenopus laevis]
Length = 220
Score = 32.1 bits (71), Expect = 7.7
Identities = 34/101 (33%), Positives = 48/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 71 SVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSDENAPYILKQQQTALEQTKGVFG 250
S + L+ + S KE + S+ ALKK + +G D D+N LK AL TKG
Sbjct: 43 SASELIVKAVSSSKE--RSGVSLAALKKALAAGGYDVDKNNSR-LKLALKAL-VTKGTLT 98
Query: 251 PLREKIALGIEKL-EEQLAVSDQLNVPDEHVQHAKETLANAK 373
++ A G KL ++QL D+ AK+T A AK
Sbjct: 99 QVKGSGASGSFKLNKKQLETKDKAAKKKPAAPKAKKTAAGAK 140
>pir||T31504 hypothetical protein Y116A8C.36 - Caenorhabditis elegans
emb|CAB55138.1| (AL117204) predicted using Genefinder [Caenorhabditis elegans]
Length = 1097
Score = 32.1 bits (71), Expect = 7.7
Identities = 18/78 (23%), Positives = 41/78 (52%)
Frame = +2
Query: 5 EDQIASIYFTMPPPSQLAIATGSVNRLLKEEASYHKELEQEEASIEALKKKIDSGAGDSD 184
++++A I + AI + + L ++ S HKE Q ++ +EAL++K D+ +
Sbjct: 471 DEKVARIKELQETNQKTAIESQELGHQLLQKQSAHKETTQRKSELEALRRKRDAIRKAIE 530
Query: 185 ENAPYILKQQQTALEQTK 238
+ A + +++ + QT+
Sbjct: 531 DAALELSTEKEKSYNQTE 548
>emb|CAA73095.1| (Y12490) Golgi-associated microtubule-binding protein [Homo sapiens]
Length = 1979
Score = 32.1 bits (71), Expect = 7.7
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Frame = +2
Query: 77 NRLLKEEASYHKELEQEEASIEALKKKIDS------GAGDSDENAPYILKQQQTALEQTK 238
N LL+ E SY +E E L+KK+ + ++ ENA + Q +L++
Sbjct: 1586 NHLLESEDSYTREALAAEDREAKLRKKVTVLEEKLVSSSNAMENASHQASVQVESLQEQL 1645
Query: 239 GVFGPLREKIALGIEKLEEQL---AVS-DQLNVPDEHVQHAKETLANAKATRTDAL 394
V R++ AL + +EQ+ A+S L + EH Q ++ + +A+ + L
Sbjct: 1646 NVVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQKQL 1701
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162207686
Number of Sequences: 509459
Number of extensions: 2885604
Number of successful extensions: 9615
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 9590
Number of HSP's gapped (non-prelim): 73
length of query: 292
length of database: 159,777,284
effective HSP length: 55
effective length of query: 236
effective length of database: 131,757,039
effective search space: 31094661204
effective search space used: 31094661204
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)