The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.0.13 [May-26-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fgr_0_c15_t3_061.ab1.seq Fgr_0_C15_T3_061.ab1 0 0 0 1
571
(564 letters)
Database: nr
509,459 sequences; 159,777,284 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_010665.1| ATP synthase subunit f; Atp17p >gi|2493092... 106 2e-22
pir||T39503 ATP synthase chain f precursor, mitochondrial -... 87 1e-16
gb|AAB03664.1| (U60318) Mre11b [Mus musculus] 34 1.1
gb|AAB04955.1| (U58987) endo/exonuclease Mre11 [Mus musculus] 34 1.1
dbj|BAA86511.1| (AB033023) KIAA1197 protein [Homo sapiens] 34 1.5
pir||T00272 hypothetical protein KIAA0541 - human (fragment... 31 9.9
gb|AAF66060.1|AF250842_1 (AF250842) multiple asters [Drosop... 31 9.9
>ref|NP_010665.1| ATP synthase subunit f; Atp17p
sp|Q06405|ATPK_YEAST ATP SYNTHASE F CHAIN, MITOCHONDRIAL PRECURSOR
pir||S61172 hypothetical protein YDR377w - yeast (Saccharomyces cerevisiae)
gb|AAB64813.1| (U28373) Ydr377wp [Saccharomyces cerevisiae]
gb|AAB70108.1| (U72652) ATP synthase subunit f [Saccharomyces cerevisiae]
Length = 101
Score = 106 bits (261), Expect = 2e-22
Identities = 50/94 (53%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Frame = +3
Query: 117 VTRRALSTLIPPKVASPKAIGAAPDAIRMQRVVSFYEKLPRGAAPEVKAKGLLGRYQAKH 296
+ +RA+STLIPPKV S K IG+AP+A R+ VV FY+ LP+G AP +KA L RY+AK+
Sbjct: 2 IFKRAVSTLIPPKVVSSKNIGSAPNAKRIANVVHFYKSLPQGPAPAIKANTRLARYKAKY 61
Query: 297 F-GKNPTAKPIIHLIVFLVGIGYAQNYYFHLRDHK 398
F G N + KP+ H + ++ GY+ YYFHLR HK
Sbjct: 62 FDGDNASGKPLWHFALGIIAFGYSMEYYFHLRHHK 96
>pir||T39503 ATP synthase chain f precursor, mitochondrial - fission yeast
(Schizosaccharomyces pombe)
emb|CAA22344.1| (AL034433) atp synthase f chain, mitochondrial precursor
[Schizosaccharomyces pombe]
Length = 96
Score = 87.4 bits (213), Expect = 1e-16
Identities = 36/91 (39%), Positives = 56/91 (60%)
Frame = +3
Query: 132 LSTLIPPKVASPKAIGAAPDAIRMQRVVSFYEKLPRGAAPEVKAKGLLGRYQAKHFGKNP 311
L + IPP+VA+P A+ A P + RM R+V FY +LP G AP+ + Y K+ GKN
Sbjct: 6 LKSFIPPQVANPTALNAFPSSARMGRIVDFYSRLPHGPAPKKSSNSFFSWYYKKYLGKNA 65
Query: 312 TAKPIIHLIVFLVGIGYAQNYYFHLRDHKNN 404
+ P++HL+ ++ YA YY+H+R H+ +
Sbjct: 66 SGAPLLHLVGAVLVFSYASEYYYHIRHHEEH 96
>gb|AAB03664.1| (U60318) Mre11b [Mus musculus]
Length = 679
Score = 34.0 bits (76), Expect = 1.1
Identities = 23/92 (25%), Positives = 35/92 (38%)
Frame = -2
Query: 356 NTDEEDNQVNDGLGSRVLAEVLGLVSAEETFSLDLGGGTSGKLLVEADDTLHADSIRSGA 177
NT+EED++V + + S + DL TS + ++DD+L A R
Sbjct: 485 NTNEEDDEVREAMSRARALRSQSETSTSAFSAEDLSFDTSEQTANDSDDSLSAVPSRGRG 544
Query: 176 NGLGRSDLGRNERRERSAGDEAHDVGISKGSR 81
G GR R D G+ +R
Sbjct: 545 RGRGRRGARGQSSAPRGGSQRGRDTGLEITTR 576
>gb|AAB04955.1| (U58987) endo/exonuclease Mre11 [Mus musculus]
Length = 706
Score = 34.0 bits (76), Expect = 1.1
Identities = 23/92 (25%), Positives = 35/92 (38%)
Frame = -2
Query: 356 NTDEEDNQVNDGLGSRVLAEVLGLVSAEETFSLDLGGGTSGKLLVEADDTLHADSIRSGA 177
NT+EED++V + + S + DL TS + ++DD+L A R
Sbjct: 512 NTNEEDDEVREAMSRARALRSQSETSTSAFSAEDLSFDTSEQTANDSDDSLSAVPSRGRG 571
Query: 176 NGLGRSDLGRNERRERSAGDEAHDVGISKGSR 81
G GR R D G+ +R
Sbjct: 572 RGRGRRGARGQSSAPRGGSQRGRDTGLEITTR 603
>dbj|BAA86511.1| (AB033023) KIAA1197 protein [Homo sapiens]
Length = 1487
Score = 33.6 bits (75), Expect = 1.5
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = -3
Query: 316 AVGFLPKCLAWYRPRRPLALTSGAAPRGSFS*KLTTRCMRIASGAAPMALGEATLGGMSV 137
A G L + + + R R L GAAPRG F+ LT+ C A+G A A G+
Sbjct: 5 APGGLHRAVCFRRLRGSLGPCGGAAPRG-FARSLTSPCSLAAAGGARAAAGDP------- 56
Query: 136 ESARRVTKLMMSVFRRVRDS 77
E + +M + R ++++
Sbjct: 57 EKGEELNVIMSGIKRTIKET 76
>pir||T00272 hypothetical protein KIAA0541 - human (fragment)
dbj|BAA25467.1| (AB011113) KIAA0541 protein [Homo sapiens]
Length = 1160
Score = 30.9 bits (68), Expect = 9.9
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 147 PPKVASP---KAIGAAPDAIRMQRVVSFYEKLPRGAAPEVKAKGLLGRYQAKHFGKNPTA 317
PP+ ++P KA G+ P + + +G +V A + R A H G +P +
Sbjct: 591 PPRPSTPDLSKARGSPPTS----------SNIVQGQIKQVAAPVVSARSDADHSGSDPPS 640
Query: 318 KPIIHLIVFLVGIGYAQNYYFH 383
P +H FLV G++Q H
Sbjct: 641 APALH-TCFLVNEGWSQLAAMH 661
>gb|AAF66060.1|AF250842_1 (AF250842) multiple asters [Drosophila melanogaster]
Length = 1491
Score = 30.9 bits (68), Expect = 9.9
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = -2
Query: 365 GVTNTDEEDNQVNDGLGSRVLAEVLGLVSAEETFSLDLGGGTSGKLLVEADDTLHADSIR 186
G T E +N V +R+LA+ AE T LG G G+ D + D +R
Sbjct: 728 GSRRTPERNNPVRPSAAARLLAQSR---EAEHT----LGVGDDGQ-----PDYVSGDYMR 775
Query: 185 SGANGLGRSDLGRNE 141
SG +GR +GR+E
Sbjct: 776 SGGMRMGRKLMGRDE 790
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157253012
Number of Sequences: 509459
Number of extensions: 3111232
Number of successful extensions: 11144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11141
Number of HSP's gapped (non-prelim): 7
length of query: 188
length of database: 159,777,284
effective HSP length: 53
effective length of query: 134
effective length of database: 132,775,957
effective search space: 17791978238
effective search space used: 17791978238
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)