Score E
Sequences producing significant alignments: (bits) Value
ref|NP_011328.1| subunit IV of cytochrome c oxidase; Cox4p ... 125 4e-28
sp|P79010|COX4_SCHPO CYTOCHROME C OXIDASE POLYPEPTIDE IV, M... 118 7e-26
gb|AAA34514.1| (M19926) cytochrome c oxidase precursor [Sac... 62 7e-09
gb|AAA34517.1| (M19929) cytochrome c oxidase precursor [Sac... 62 7e-09
gb|AAA34516.1| (M19928) cytochrome c oxidase precursor [Sac... 62 7e-09
gb|AAA34512.1| (M19924) cytochrome c oxidase precursor [Sac... 62 7e-09
gb|AAA34515.1| (M19927) cytochrome c oxidase precursor [Sac... 62 7e-09
gb|AAA34511.1| (M19923) cytochrome c oxidase precursor [Sac... 62 7e-09
gb|AAA34513.1| (M19925) cytochrome c oxidase precursor [Sac... 61 2e-08
dbj|BAA01743.1| (D10951) cytochrome c oxidase subunit Vb [R... 58 1e-07
sp|P12075|COXB_RAT CYTOCHROME C OXIDASE POLYPEPTIDE VB, MIT... 58 1e-07
emb|CAA32425.1| (X14208) cytochrome c oxidase subunit VIa (... 58 1e-07
ref|NP_034072.1| cytochrome c oxidase, subunit Vb >gi|11710... 58 1e-07
pir||T03033 probable cytochrome-c oxidase (EC 1.9.3.1) Vb c... 57 2e-07
ref|NP_001853.1| cytochrome c oxidase subunit Vb >gi|117103... 56 4e-07
prf||0902159A oxidase IV,cytochrome [Bos taurus] 56 5e-07
sp|P00428|COXB_BOVIN CYTOCHROME C OXIDASE POLYPEPTIDE VB (V... 55 9e-07
dbj|BAA83574.1| (AP000399) ESTs AU057456(S21460),AU057455(S... 49 7e-05
gb|AAF31041.1|AC005893_12 (AC005893) L6202.3 [Leishmania ma... 35 0.84
gb|AAD14106.1|S72487_11 (S72487) orf3 5' of PD-ECGF/TP [Hom... 35 0.84
gb|AAF31047.1|AC005802_5 (AC005802) L6202.3 [Leishmania major] 35 0.84
sp|P29505|COX5_DICDI CYTOCHROME C OXIDASE POLYPEPTIDE V >gi... 35 1.1
gb|AAF60419.1| (AC006708) contains similarity to human hypo... 34 1.4
emb|CAB70997.1| (AL132957) putative protein [Arabidopsis th... 34 1.4
sp|P80330|COXL_ONCMY CYTOCHROME C OXIDASE POLYPEPTIDE VB-LI... 34 1.9
gb|AAD25398.1|AF121905_4 (AF121905) NidD aldolase [Rhodococ... 34 1.9
pir||T08013 2S seed storage protein precursor - Douglas fir... 34 2.5
ref|NP_034787.1| kappa B and Rss recognition component >gi|... 33 4.2
gb|AAA30465.1| (M19962) cytochrome c oxidase precursor (EC ... 33 4.2
gb|AAC33839.1| (U93363) 2-aminomuconic acid semialdehyde de... 32 5.6
gb|AAB41586.1| (U58047) p167 [Homo sapiens] 32 9.5
ref|NP_003741.1| eukaryotic translation initiation factor 3... 32 9.5
dbj|BAA02711.1| (D13457) Cho-Orf3 [Streptomyces sp.] >gi|10... 32 9.5
gb|AAB71465.1| (AC000098) EST gb|ATTS1136 comes from this g... 32 9.5
pir||T02844 probable membrane protein L3169.1 - Leishmania ... 32 9.5
>ref|NP_011328.1| subunit IV of cytochrome c oxidase; Cox4p
sp|P04037|COX4_YEAST CYTOCHROME C OXIDASE POLYPEPTIDE IV, MITOCHONDRIAL PRECURSOR
pir||OLBY4 cytochrome-c oxidase (EC 1.9.3.1) chain IV precursor - yeast
(Saccharomyces cerevisiae)
emb|CAA25665.1| (X01418) cytochrome c oxidase subunit IV precursor [Saccharomyces
cerevisiae]
emb|CAA62787.1| (X91489) cytochrome C oxidase chain IV precursor [Saccharomyces
cerevisiae]
emb|CAA96899.1| (Z72709) ORF YGL187c [Saccharomyces cerevisiae]
Length = 155
Score = 125 bits (312), Expect = 4e-28
Identities = 62/129 (48%), Positives = 85/129 (65%)
Frame = +1
Query: 163 RPATPSEQAAALAGTAEKKVGSYKVLKEIRTEEDLFGPGAAPGTVPTDLEQSTGLERLEI 342
+PAT + ++ + V + + L E+ E L GPGA GTVPTDL+Q TGL RLE+
Sbjct: 12 KPATRTLCSSRYLLQQKPVVKTAQNLAEVNGPETLIGPGAKEGTVPTDLDQETGLARLEL 71
Query: 343 LGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAGCTGFPGDSHSVTWLGVTRERP 522
LGK+EG+D+FD +PLD++R GTMKDPI++ S + + GCTG P SH++ WL T
Sbjct: 72 LGKLEGIDVFDTKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAGSHTIMWLKPT-VNE 130
Query: 523 IERCPECGS 549
+ RC ECGS
Sbjct: 131 VARCWECGS 139
>sp|P79010|COX4_SCHPO CYTOCHROME C OXIDASE POLYPEPTIDE IV, MITOCHONDRIAL PRECURSOR
pir||T37563 cytochrome c oxidase polypeptide iv precursor - fission yeast
(Schizosaccharomyces pombe)
dbj|BAA19097.1| (AB000399) cytochrome c oxidase subunit IV [Schizosaccharomyces
pombe]
emb|CAB36508.1| (AL035439) cytochrome c oxidase polypeptide iv precursor.
[Schizosaccharomyces pombe]
Length = 164
Score = 118 bits (293), Expect = 7e-26
Identities = 55/104 (52%), Positives = 71/104 (67%)
Frame = +1
Query: 238 LKEIRTEEDLFGPGAAPGTVPTDLEQSTGLERLEILGKMEGVDIFDMRPLDATRLGTMKD 417
L + DL GPG G VPTDLEQ+TGLER E+L ++ G D FDM+PLDA+R GT+ D
Sbjct: 46 LANAKEPSDLIGPGGRDGEVPTDLEQATGLERYELLSELSGRDAFDMKPLDASRKGTLTD 105
Query: 418 PIMVRSAGEEQXAGCTGFPGDSHSVTWLGVTRERPIERCPECGS 549
PIMV S + GCTG P SH++ W+ V +++ + RCPECGS
Sbjct: 106 PIMVTSLDPYRHIGCTGSPSGSHNLIWMTVYKDK-LRRCPECGS 148
>gb|AAA34514.1| (M19926) cytochrome c oxidase precursor [Saccharomyces cerevisiae]
Length = 97
Score = 62.1 bits (148), Expect = 7e-09
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 238 LKEIRTEEDLFGPGAAPGTVPTDLEQSTGLERLEILGKMEGVD 366
L E+ E L GPGA GTVPTDL+Q TGL RLE+LGK+EG+D
Sbjct: 55 LAEVNGPETLIGPGAKEGTVPTDLDQETGLARLELLGKLEGID 97
>gb|AAA34517.1| (M19929) cytochrome c oxidase precursor [Saccharomyces cerevisiae]
Length = 97
Score = 62.1 bits (148), Expect = 7e-09
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 238 LKEIRTEEDLFGPGAAPGTVPTDLEQSTGLERLEILGKMEGVD 366
L E+ E L GPGA GTVPTDL+Q TGL RLE+LGK+EG+D
Sbjct: 55 LAEVNGPETLIGPGAKEGTVPTDLDQETGLARLELLGKLEGID 97
>gb|AAA34516.1| (M19928) cytochrome c oxidase precursor [Saccharomyces cerevisiae]
Length = 93
Score = 62.1 bits (148), Expect = 7e-09
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 238 LKEIRTEEDLFGPGAAPGTVPTDLEQSTGLERLEILGKMEGVD 366
L E+ E L GPGA GTVPTDL+Q TGL RLE+LGK+EG+D
Sbjct: 51 LAEVNGPETLIGPGAKEGTVPTDLDQETGLARLELLGKLEGID 93
>gb|AAA34512.1| (M19924) cytochrome c oxidase precursor [Saccharomyces cerevisiae]
Length = 77
Score = 62.1 bits (148), Expect = 7e-09
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 238 LKEIRTEEDLFGPGAAPGTVPTDLEQSTGLERLEILGKMEGVD 366
L E+ E L GPGA GTVPTDL+Q TGL RLE+LGK+EG+D
Sbjct: 35 LAEVNGPETLIGPGAKEGTVPTDLDQETGLARLELLGKLEGID 77
>gb|AAA34515.1| (M19927) cytochrome c oxidase precursor [Saccharomyces cerevisiae]
Length = 61
Score = 62.1 bits (148), Expect = 7e-09
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 238 LKEIRTEEDLFGPGAAPGTVPTDLEQSTGLERLEILGKMEGVD 366
L E+ E L GPGA GTVPTDL+Q TGL RLE+LGK+EG+D
Sbjct: 19 LAEVNGPETLIGPGAKEGTVPTDLDQETGLARLELLGKLEGID 61
>gb|AAA34511.1| (M19923) cytochrome c oxidase precursor [Saccharomyces cerevisiae]
Length = 61
Score = 62.1 bits (148), Expect = 7e-09
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 238 LKEIRTEEDLFGPGAAPGTVPTDLEQSTGLERLEILGKMEGVD 366
L E+ E L GPGA GTVPTDL+Q TGL RLE+LGK+EG+D
Sbjct: 19 LAEVNGPETLIGPGAKEGTVPTDLDQETGLARLELLGKLEGID 61
>gb|AAA34513.1| (M19925) cytochrome c oxidase precursor [Saccharomyces cerevisiae]
Length = 61
Score = 60.5 bits (144), Expect = 2e-08
Identities = 27/43 (62%), Positives = 33/43 (75%)
Frame = +1
Query: 238 LKEIRTEEDLFGPGAAPGTVPTDLEQSTGLERLEILGKMEGVD 366
L ++ E L GPGA GTVPTDL+Q TGL RLE+LGK+EG+D
Sbjct: 19 LAKVNGPETLIGPGAKEGTVPTDLDQETGLARLELLGKLEGID 61
>dbj|BAA01743.1| (D10951) cytochrome c oxidase subunit Vb [Rattus norvegicus]
Length = 129
Score = 58.2 bits (138), Expect = 1e-07
Identities = 34/90 (37%), Positives = 51/90 (55%)
Frame = +1
Query: 280 AAPGTVPTDLEQSTGLERLEILGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAG 459
A+ G VPTD EQ+TGLER ++ G+D ++M P A GT +DP +V S ++ G
Sbjct: 32 ASGGGVPTDEEQATGLEREIMIAAQRGLDPYNMLPPKAAS-GTKEDPNLVPSVSNKRIVG 90
Query: 460 CTGFPGDSHSVTWLGVTRERPIERCPECGS 549
C D+ +V W + + +RCP CG+
Sbjct: 91 CI-CEEDNCTVIWFWL-HQGQSQRCPNCGT 118
>sp|P12075|COXB_RAT CYTOCHROME C OXIDASE POLYPEPTIDE VB, MITOCHONDRIAL PRECURSOR (VIA*)
pir||JC2254 cytochrome-c oxidase (EC 1.9.3.1) chain Vb precursor - rat
dbj|BAA01744.1| (D10952) cytochrome c oxidase subunit Vb [Rattus norvegicus]
Length = 129
Score = 58.2 bits (138), Expect = 1e-07
Identities = 34/90 (37%), Positives = 51/90 (55%)
Frame = +1
Query: 280 AAPGTVPTDLEQSTGLERLEILGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAG 459
A+ G VPTD EQ+TGLER ++ G+D ++M P A GT +DP +V S ++ G
Sbjct: 32 ASGGGVPTDEEQATGLEREIMIAAQRGLDPYNMLPPKAAS-GTKEDPNLVPSVSNKRIVG 90
Query: 460 CTGFPGDSHSVTWLGVTRERPIERCPECGS 549
C D+ +V W + + +RCP CG+
Sbjct: 91 CI-CEEDNCTVIWFWL-HQGESQRCPNCGT 118
>emb|CAA32425.1| (X14208) cytochrome c oxidase subunit VIa (AA 1 - 118) [Rattus
norvegicus]
Length = 117
Score = 58.2 bits (138), Expect = 1e-07
Identities = 34/90 (37%), Positives = 51/90 (55%)
Frame = +1
Query: 280 AAPGTVPTDLEQSTGLERLEILGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAG 459
A+ G VPTD EQ+TGLER ++ G+D ++M P A GT +DP +V S ++ G
Sbjct: 20 ASGGGVPTDEEQATGLEREIMIAAQRGLDPYNMLPPKAAS-GTKEDPNLVPSVSNKRIVG 78
Query: 460 CTGFPGDSHSVTWLGVTRERPIERCPECGS 549
C D+ +V W + + +RCP CG+
Sbjct: 79 CI-CEEDNCTVIWFWL-HQGESQRCPNCGT 106
>ref|NP_034072.1| cytochrome c oxidase, subunit Vb
sp|P19536|COXB_MOUSE CYTOCHROME C OXIDASE POLYPEPTIDE VB, MITOCHONDRIAL PRECURSOR
pir||A39425 cytochrome-c oxidase (EC 1.9.3.1) chain Vb precursor - mouse
emb|CAA37313.1| (X53157) cytochrome c oxidase subunit Vb precursor [Mus musculus]
gb|AAA37515.1| (M77040) cytochrome c oxidase subunit Vb [Mus musculus]
Length = 128
Score = 58.2 bits (138), Expect = 1e-07
Identities = 34/90 (37%), Positives = 52/90 (57%)
Frame = +1
Query: 280 AAPGTVPTDLEQSTGLERLEILGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAG 459
A+ G VPTD EQ+TGLER ++ +G+D ++M P A GT +DP +V S ++ G
Sbjct: 31 ASGGGVPTDEEQATGLEREIMIAAQKGLDPYNMLPPKAAS-GTKEDPNLVPSISNKRIVG 89
Query: 460 CTGFPGDSHSVTWLGVTRERPIERCPECGS 549
C D+ +V W + + +RCP CG+
Sbjct: 90 CI-CEEDNCTVIWFWLHKGES-QRCPNCGT 117
>pir||T03033 probable cytochrome-c oxidase (EC 1.9.3.1) Vb chain precursor -
rice mitochondrion
dbj|BAA12797.1| (D85381) cytochrome c oxidase subunit Vb precursor [Oryza sativa]
Length = 169
Score = 57.0 bits (135), Expect = 2e-07
Identities = 43/136 (31%), Positives = 63/136 (45%), Gaps = 1/136 (0%)
Frame = +1
Query: 145 ARLDASRPATPSEQAAALAGTAEKKVGSYKVLKEIRTEEDLFGPGAAPGTVPTDLEQSTG 324
A AS A+ + A+LA A + + RT L G P TV + +TG
Sbjct: 16 ASASASAAASGAAGPASLARAAPLSTAAAAAFR--RTSPLLSGD--KPATVEDVMPIATG 71
Query: 325 LERLEILGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAGCTGFPG-DSHSVTWL 501
LER E+ +++G FDM P GT + P ++ S ++ GC G G D H V W
Sbjct: 72 LEREELAAELKGEKRFDMDP-PVGPFGTKEAPAVIESYYNKRIVGCPGGEGEDEHDVVWF 130
Query: 502 GVTRERPIERCPECGSF 552
+ ++ P E CP C +
Sbjct: 131 WLKKDEPHE-CPVCSQY 146
>ref|NP_001853.1| cytochrome c oxidase subunit Vb
sp|P10606|COXB_HUMAN CYTOCHROME C OXIDASE POLYPEPTIDE VB, MITOCHONDRIAL PRECURSOR
pir||OTHU5B cytochrome-c oxidase (EC 1.9.3.1) chain Vb precursor - human
gb|AAA52060.1| (M59250) COX5B [Homo sapiens]
gb|AAA52061.1| (M19961) cytochrome c oxidase precursor (EC 1.9.3.1) [Homo sapiens]
Length = 129
Score = 56.2 bits (133), Expect = 4e-07
Identities = 35/90 (38%), Positives = 54/90 (59%), Gaps = 1/90 (1%)
Frame = +1
Query: 280 AAPGTVPTDLEQSTGLERLEILGKMEGVDIFD-MRPLDATRLGTMKDPIMVRSAGEEQXA 456
A+ G VPTD EQ+TGLER +L +G+D ++ + P A+ GT +DP +V S ++
Sbjct: 32 ASGGGVPTDEEQATGLEREIMLAAKKGLDPYNVLAPKGAS--GTREDPNLVPSISNKRIV 89
Query: 457 GCTGFPGDSHSVTWLGVTRERPIERCPECGS 549
GC D+ SV W + + + +RCP CG+
Sbjct: 90 GCI-CEEDNTSVVWFWLHKGQ-AQRCPRCGA 118
>prf||0902159A oxidase IV,cytochrome [Bos taurus]
Length = 97
Score = 55.8 bits (132), Expect = 5e-07
Identities = 34/90 (37%), Positives = 51/90 (55%)
Frame = +1
Query: 280 AAPGTVPTDLEQSTGLERLEILGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAG 459
A+ G VPTD EQ+TGLER +L +G D +++ AT GT +DP +V S ++ G
Sbjct: 1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATS-GTKEDPNLVPSITNKRIVG 59
Query: 460 CTGFPGDSHSVTWLGVTRERPIERCPECGS 549
C D+ +V W + + +RCP CG+
Sbjct: 60 C--IQEDNSTVIWFWL-HKGEAQRCPSCGT 86
>sp|P00428|COXB_BOVIN CYTOCHROME C OXIDASE POLYPEPTIDE VB (VI)
pir||OGBO6A cytochrome-c oxidase (EC 1.9.3.1) chain Vb - bovine
pdb|2OCC|F Chain F, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|S Chain S, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCR|F Chain F, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|S Chain S, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCO|F Chain F, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound
State
pdb|1OCO|S Chain S, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound
State
pdb|1OCC|F Chain F, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|S Chain S, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCZ|F Chain F, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|S Chain S, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
Length = 98
Score = 55.0 bits (130), Expect = 9e-07
Identities = 34/90 (37%), Positives = 51/90 (55%)
Frame = +1
Query: 280 AAPGTVPTDLEQSTGLERLEILGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAG 459
A+ G VPTD EQ+TGLER +L +G D +++ AT GT +DP +V S ++ G
Sbjct: 1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATS-GTKEDPNLVPSITNKRIVG 59
Query: 460 CTGFPGDSHSVTWLGVTRERPIERCPECGS 549
C D+ +V W + + +RCP CG+
Sbjct: 60 CI-CEEDNSTVIWFWL-HKGEAQRCPSCGT 87
>dbj|BAA83574.1| (AP000399) ESTs AU057456(S21460),AU057455(S21460) correspond to a
region of the predicted gene.~Similar to cytochrome c
oxidase subunit Vb precursor (D85381) [Oryza sativa]
Length = 154
Score = 48.8 bits (114), Expect = 7e-05
Identities = 28/79 (35%), Positives = 42/79 (52%), Gaps = 1/79 (1%)
Frame = +1
Query: 316 STGLERLEILGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAGCTGFPG-DSHSV 492
+TGLER EI +++G FDM GT + P +++S ++ GC G G D H V
Sbjct: 53 ATGLEREEIAAELQGKKRFDM-DAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEGEDEHDV 111
Query: 493 TWLGVTRERPIERCPECGSF 552
W + + +P E CP C +
Sbjct: 112 VWFWLEKGKPHE-CPVCTQY 130
>gb|AAF31041.1|AC005893_12 (AC005893) L6202.3 [Leishmania major]
Length = 2310
Score = 35.2 bits (79), Expect = 0.84
Identities = 20/44 (45%), Positives = 26/44 (58%), Gaps = 3/44 (6%)
Frame = -2
Query: 742 TPTYDVRSTTQPHTPLNSNGHRSIHLVPALRPQR---EPQTVLSSTT 611
TP Y V STT TP S+ +H PALRP +P +V+S+ T
Sbjct: 88 TPGYVVHSTTISATPARSSPVPPLHTTPALRPHAPSPQPASVVSTAT 134
>gb|AAD14106.1|S72487_11 (S72487) orf3 5' of PD-ECGF/TP [Homo sapiens]
Length = 157
Score = 35.2 bits (79), Expect = 0.84
Identities = 22/66 (33%), Positives = 28/66 (42%)
Frame = -1
Query: 731 RCAINYAAPHSSEL*WPQKHTPGTSSQAATRAANGPELHHLHPPRQGADCPQDQRRSTLS 552
R + A PH+++ P+ PG S R P L HL PP + LS
Sbjct: 17 RLHLRRALPHAADDVRPRARPPGARSHDRARHRRRPRLLHLRPP------------TPLS 64
Query: 551 KLPHSG 534
LPHSG
Sbjct: 65 ALPHSG 70
>gb|AAF31047.1|AC005802_5 (AC005802) L6202.3 [Leishmania major]
Length = 2354
Score = 35.2 bits (79), Expect = 0.84
Identities = 20/44 (45%), Positives = 26/44 (58%), Gaps = 3/44 (6%)
Frame = -2
Query: 742 TPTYDVRSTTQPHTPLNSNGHRSIHLVPALRPQR---EPQTVLSSTT 611
TP Y V STT TP S+ +H PALRP +P +V+S+ T
Sbjct: 88 TPGYVVHSTTISATPARSSPVPPLHTTPALRPHAPSPQPASVVSTAT 134
>sp|P29505|COX5_DICDI CYTOCHROME C OXIDASE POLYPEPTIDE V
pir||S19718 cytochrome-c oxidase (EC 1.9.3.1) chain V - slime mold
(Dictyostelium discoideum)
emb|CAA39206.1| (X55671) cytochrome c oxidase subunit V [Dictyostelium discoideum]
Length = 120
Score = 34.8 bits (78), Expect = 1.1
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = +1
Query: 403 GTMKDPIMVRSAGEEQXAGCTGFPGDSHSVTWLGVTRERPIERCPECG 546
GT+K P++V S + C G G+ H + + V ++P C +CG
Sbjct: 57 GTLKSPVIVESIFHSRIVACEGGDGEEHDILFHTVAEKKP-TICLDCG 103
>gb|AAF60419.1| (AC006708) contains similarity to human hypothetical protein KIAA0056
(SP:P42695) and Arabidopsis thaliana unnamed protein
product (GB:Z97339) [Caenorhabditis elegans]
Length = 1724
Score = 34.4 bits (77), Expect = 1.4
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = -1
Query: 671 TPGTSSQAATRAANGPELHHLHPPRQGADCPQDQRRSTLSKLPHSG 534
T SS A+T + P +HH PP Q ++ P Q+ S + H G
Sbjct: 968 TENGSSDASTVNPDMPSVHHTRPPTQLSEVPSSQKSSKGGMMSHEG 1013
>emb|CAB70997.1| (AL132957) putative protein [Arabidopsis thaliana]
Length = 1105
Score = 34.4 bits (77), Expect = 1.4
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 4/95 (4%)
Frame = -2
Query: 457 RRXAPHQQIGP*WGPSSFRGGWHREGACRRCRHPPSYRESPDAQDRWTARDR*GRYRGRH 278
R +PH++ S+ RG + R + R H SYRE D W +R R +
Sbjct: 228 RDESPHKRYEKSRSRSTGRGEFSRSRSPRGRSHGRSYREDSYEGDHWNESER----RREY 283
Query: 277 QDRRDPPRF-GSPSGPCRIQPSSRRCQQE---QRPARWG 173
+DR + F +PS ++ S + +E Q A WG
Sbjct: 284 EDRHNQDHFSATPSATVVVKGLSMKSTEEDLYQILAEWG 322
>sp|P80330|COXL_ONCMY CYTOCHROME C OXIDASE POLYPEPTIDE VB-LIVER
pir||S43628 cytochrome-c oxidase (EC 1.9.3.1) chain Vb, hepatic - rainbow trout
(fragment)
Length = 33
Score = 34.0 bits (76), Expect = 1.9
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = +1
Query: 283 APGTVPTDLEQSTGLERLEILGKMEGVDIFDM 378
A G +PTD EQ+TGLE + ++ G D +D+
Sbjct: 1 AVGGIPTDEEQATGLEEIVMVAAQXGADXYDV 32
>gb|AAD25398.1|AF121905_4 (AF121905) NidD aldolase [Rhodococcus sp. I24]
Length = 251
Score = 34.0 bits (76), Expect = 1.9
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 81 HHRGSPRRRPTCCRSHLCHLRRSP*CQPPCHPQRAGRCSCWHRREEGW 224
HHR +P P C RS + RSP P+ RC C + GW
Sbjct: 163 HHRSTPSS-PRCPRSSARNTLRSPRSSRWTSPRSTARCGCCRSKATGW 209
>pir||T08013 2S seed storage protein precursor - Douglas fir (fragment)
gb|AAC27001.1| (AF029973) 2S seed storage protein precursor [Pseudotsuga
menziesii]
Length = 162
Score = 33.6 bits (75), Expect = 2.5
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = -2
Query: 334 DAQDRWTARDR*GRY-RGRHQDRRDPPRFGSPSGPCRIQPSSRRCQQEQRPARWGWQGG 161
D++D W + R R RGR +++ R C +Q RRC QRP+R+ GG
Sbjct: 103 DSEDSWINQRRGRREGRGRREEQEMAERAAYLPDTCNVQEPPRRC-DIQRPSRYSMAGG 160
>ref|NP_034787.1| kappa B and Rss recognition component
gb|AAB40884.1| (L46815) DNA binding protein Rc [Mus musculus]
Length = 2282
Score = 32.8 bits (73), Expect = 4.2
Identities = 31/95 (32%), Positives = 46/95 (47%), Gaps = 21/95 (22%)
Frame = -1
Query: 683 PQKHTPGTSSQAATRAANGP------------------ELHHLHPPRQGADCPQDQRRST 558
PQ+ +P +QA+ + GP EL L P G + P R+T
Sbjct: 1957 PQQCSPAREAQASVTSTPGPQMGPGRDLGPHLCGSPRPELSRLTPYPIGREAPAGLERAT 2016
Query: 557 LSKLPH---SGHRSIGRSRVTPSQVTL*ESPGKPVQPAXCSSPADRTIMGSFIVPR 399
+ P + S+G++ P V PGK CS AD++ +G VPR
Sbjct: 2017 DTGTPRYSPTRRWSLGQAESPPQTVL----PGKWALAGPCSPSADKSGLGLGPVPR 2068
>gb|AAA30465.1| (M19962) cytochrome c oxidase precursor (EC 1.9.3.1) [Bos taurus]
Length = 79
Score = 32.8 bits (73), Expect = 4.2
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 340 ILGKMEGVDIFDMRPLDATRLGTMKDPIMVRSAGEEQXAGCTGFPGDSHSVTWLGVTRER 519
+L +G D +++ AT GT +DP +V S ++ GC D+ +V W + +
Sbjct: 2 MLAARKGQDPYNILAPKATS-GTKEDPNLVPSITNKRIVGCI-CEEDNSTVIWFWL-HKG 58
Query: 520 PIERCPECGS 549
+RCP CG+
Sbjct: 59 EAQRCPSCGT 68
>gb|AAC33839.1| (U93363) 2-aminomuconic acid semialdehyde dehydrogenase
[Pseudomonas pseudoalcaligenes]
Length = 542
Score = 32.5 bits (72), Expect = 5.6
Identities = 26/56 (46%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Frame = +3
Query: 84 HRG----SPRRRPTCCRSHLCHLRRSP*CQPPCHPQRAGRCSCWHR---REEGWILQGPE 242
HRG SP RRP R LRR P QP C P G S W R R G
Sbjct: 336 HRGYPCPSPARRPRAGRCRPGDLRRIPRAQPGCRPS-PGADSQWPRTVARRAAAESAGDV 394
Query: 243 GDP 251
GDP
Sbjct: 395 GDP 397
>gb|AAB41586.1| (U58047) p167 [Homo sapiens]
Length = 466
Score = 31.7 bits (70), Expect = 9.5
Identities = 24/91 (26%), Positives = 33/91 (35%)
Frame = -2
Query: 430 GP*WGPSSFRGGWHREGACRRCRHPPSYRESPDAQDRWTARDR*GRYRGRHQDRRDPPRF 251
GP W P GGW + R P P + W R + +DR + R
Sbjct: 251 GP-WRPLVKPGGWREKEKAREESWGPPRESRPSEEREWD--------REKERDRDNQDRE 301
Query: 250 GSPSGPCRIQPSSRRCQQEQRPARWGWQGGW 158
+ P R + R +E R R +GGW
Sbjct: 302 ENDKDPERERDRERDVDREDRFRRPRDEGGW 332
>ref|NP_003741.1| eukaryotic translation initiation factor 3, subunit 10 (theta,
150/170kD)
sp|Q14152|IF3A_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 10 (EIF-3 THETA)
(EIF3 P167) (EIF3 P180) (EIF3 P185) (KIAA0139)
dbj|BAA09488.1| (D50929) The KIAA0139 gene product is related to mouse centrosomin B.
[Homo sapiens]
gb|AAB41584.1| (U58046) p167 [Homo sapiens]
gb|AAB80695.1| (U78311) translation initiation factor 3 large subunit [Homo sapiens]
Length = 1382
Score = 31.7 bits (70), Expect = 9.5
Identities = 24/91 (26%), Positives = 33/91 (35%)
Frame = -2
Query: 430 GP*WGPSSFRGGWHREGACRRCRHPPSYRESPDAQDRWTARDR*GRYRGRHQDRRDPPRF 251
GP W P GGW + R P P + W R + +DR + R
Sbjct: 1167 GP-WRPLVKPGGWREKEKAREESWGPPRESRPSEEREWD--------REKERDRDNQDRE 1217
Query: 250 GSPSGPCRIQPSSRRCQQEQRPARWGWQGGW 158
+ P R + R +E R R +GGW
Sbjct: 1218 ENDKDPERERDRERDVDREDRFRRPRDEGGW 1248
>dbj|BAA02711.1| (D13457) Cho-Orf3 [Streptomyces sp.]
prf||2113328A DNA-binding protein [Streptomyces sp.]
Length = 883
Score = 31.7 bits (70), Expect = 9.5
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 10/68 (14%)
Frame = -1
Query: 668 PGTSSQAATRAANGPELHHLHPPRQGADCPQDQRRS--TLSKLPHSGHRSIG-------- 519
PG +++ G LHH HP GA R++ L P SGHR+I
Sbjct: 738 PGVVTESLLGTLTGGRLHHTHPD-AGAPASWQYRQALVALGTAPFSGHRTIDSLLGSGAT 796
Query: 518 RSRVTPSQVTL*ESPGKP 465
+R P++ PG P
Sbjct: 797 AARPAPAKPPAARVPGPP 814
>gb|AAB71465.1| (AC000098) EST gb|ATTS1136 comes from this gene. [Arabidopsis
thaliana]
Length = 402
Score = 31.7 bits (70), Expect = 9.5
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 724 RSTTQPHTPLNSNGHRSIHLVPALRPQREPQTVLSSTTSTRRA 596
R++T P+T NSN + +P+ PQT SST+ST A
Sbjct: 18 RASTYPNTYSNSNPNADASSMPSTNTTTVPQTSSSSTSSTTTA 60
>pir||T02844 probable membrane protein L3169.1 - Leishmania major
gb|AAC24667.1| (AE001274) L3169.1 [Leishmania major]
Length = 1784
Score = 31.7 bits (70), Expect = 9.5
Identities = 17/39 (43%), Positives = 18/39 (45%), Gaps = 1/39 (2%)
Frame = -2
Query: 319 WTARDR*-GRYRGRHQDRRDPPRFGSPSGPCRIQPSSRRC 203
W RDR G YR H RR PP S PC + P C
Sbjct: 337 WRQRDRLWGAYRYLHGPRRLPPLCLSGQAPCAVPPGVHAC 376
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223635529
Number of Sequences: 509459
Number of extensions: 4722728
Number of successful extensions: 15603
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 15565
Number of HSP's gapped (non-prelim): 38
length of query: 279
length of database: 159,777,284
effective HSP length: 55
effective length of query: 224
effective length of database: 131,757,039
effective search space: 29513576736
effective search space used: 29513576736
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)