Score E
Sequences producing significant alignments: (bits) Value
sp|P50766|VE2_HPV20 REGULATORY PROTEIN E2 >gi|1020166|gb|AA... 39 0.055
pir||A48018 mucin 7 precursor, salivary - human 38 0.12
ref|NP_012974.1| nucleosome assembly protein I; Nap1p >gi|5... 36 0.37
gb|AAA34811.1| (M63555) nucleosome assembly protein [Saccha... 36 0.37
pir||A35938 profilaggrin - human (fragments) 36 0.37
gb|AAA63244.1| (M60494) profilaggrin [Homo sapiens] 36 0.37
gb|AAA36487.1| (M96943) profilaggrin [Homo sapiens] 36 0.48
pir||T40114 nucleosome assembly protein - fission yeast (Sc... 36 0.63
dbj|BAA13932.1| (D89271) similar to Saccharomyces cerevisia... 36 0.63
gb|AAF46652.1| (AE003452) CG10543 gene product [Drosophila ... 35 0.83
gb|AAF49425.1| (AE003526) CG9692 gene product [Drosophila m... 35 1.1
gb|AAD17450.1| (AC006284) unknown protein [Arabidopsis thal... 34 1.4
gb|AAC23891.1| (AF071208) transition protein 2 [Canis famil... 34 1.9
gb|AAF51393.1| (AE003587) CG5011 gene product [Drosophila m... 34 1.9
pir||S55645 transcription control protein 50 - equine herpe... 34 1.9
ref|NP_006412.1| brefeldin A-inhibited guanine nucleotide-e... 34 1.9
gb|AAF68672.1|AF239995_2 (AF239995) L8530.3 [Leishmania major] 34 2.4
emb|CAB89674.1| (AL354592) hypothetical protein L8138.08 [L... 34 2.4
pir||T29980 hypothetical protein F11G11.10 - Caenorhabditis... 33 3.2
pir||T29982 hypothetical protein F11G11.12 - Caenorhabditis... 33 3.2
pir||T39146 hypothetical protein SPAC8C9.09c - fission yeas... 33 4.2
pir||JW0067 chitinase (EC 3.2.1.14) A - Emericella nidulans 33 4.2
gb|AAD29829.1|AC006202_7 (AC006202) putative proline/hydrox... 33 4.2
gb|AAB18341.1| (U75467) Atu [Drosophila melanogaster] 33 4.2
gb|AAF51991.1| (AE003602) Atu gene product [Drosophila mela... 33 4.2
pir||S58380 probable RNA-directed DNA polymerase (EC 2.7.7.... 32 7.2
sp|P50809|VE2_HPV36 REGULATORY PROTEIN E2 >gi|1020222|gb|AA... 32 7.2
gb|AAC34383.1| (AF056116) All-1 related protein [Takifugu r... 32 7.2
gb|AAF46624.1| (AE003452) CG15226 gene product [Drosophila ... 32 7.2
ref|NP_011024.1| ubiquitin carboxyl-terminal hydrolase; Ubp... 32 7.2
gb|AAC45813.1| (AF015088) ORF2 [Rhodococcus erythropolis] 32 7.2
gb|AAF53547.1| (AE003652) CG4668 gene product [alt 1] [Dros... 32 7.2
gb|AAF53546.1| (AE003652) CG4668 gene product [alt 2] [Dros... 32 7.2
gb|AAB51284.1| (U91682) vitelline membrane protein homolog ... 32 7.2
pir||B36664 S59/4 homeotic protein - fruit fly (Drosophila ... 32 7.2
pir||T12483 hypothetical protein DKFZp564B0769.1 - human (f... 32 9.4
sp||MUC3_HUMAN_1 [Segment 1 of 2] MUCIN 3 (INTESTINAL MUCIN... 32 9.4
ref|NP_057889.1| suppressor of white apricot homolog 2-pend... 32 9.4
ref|NP_005798.1| megakaryocyte stimulating factor; musculin... 32 9.4
sp|Q00111|VG45_HSVI1 HYPOTHETICAL GENE 45 PROTEIN >gi|76422... 32 9.4
pir||T03301 rab3 effector protein Rim - rat >gi|2317778|gb|... 32 9.4
emb|CAB56375.1| (AL118514) putative lipoprotein [Streptomyc... 32 9.4
>sp|P50766|VE2_HPV20 REGULATORY PROTEIN E2
gb|AAA79390.1| (U31778) regulatory protein E2 [Human papillomavirus type 20]
Length = 497
Score = 39.1 bits (89), Expect = 0.055
Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 2/179 (1%)
Frame = -3
Query: 723 NRATHPPTTRGPYTHGFTHKRACQHTRHQGSRLPTRPSTRIR--NDSRQQPRSRAGSPRR 550
N ++ P T T + ++ Q T +G R RPS+R R +RQ+ RSR+ S +
Sbjct: 214 NASSQTPATTTDSTTRQSPRKQSQQTNTKGRRYGRRPSSRTRRTTQTRQRRRSRSKSKSK 273
Query: 549 TMSPASLSRNLLSAIIAELNDDVSSNAHSHYHDRTGLEGVREFDVGLHLSSENMDRRSGS 370
+ S + S +E S S Y R+G G ++ R G
Sbjct: 274 SRSRSRSRHRSRSRSRSE-----SPRRRSRYRSRSGSRGRVALRAITTTTTTTTRRAGGG 328
Query: 369 EIEGVHSRHPDTSRSSKHRGRKVTRCSVNIGPREIVGAPESFG*AAGFGREHSPRQHGPD 190
S SR + GR +R G R +P G S RQHG
Sbjct: 329 SPTSTSSTTSQRSRQLRGGGRGGSRQRAR-GRRSSSTSPTPS--KRSRGESESVRQHGIS 385
Query: 189 P 187
P
Sbjct: 386 P 386
>pir||A48018 mucin 7 precursor, salivary - human
Length = 377
Score = 37.9 bits (86), Expect = 0.12
Identities = 24/71 (33%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
Frame = -2
Query: 817 SCSLPPDTTWINTTDSIQAPHRHTTPA--NNTPEPSDTPPHNPWSIYTRLYTQKSMPTHA 644
S S PP+TT T S P ++PA T P TP +P ++ + PTH
Sbjct: 273 SASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTSETSAAPTHQ 332
Query: 643 TPRQQTSDTTQYK 605
T T+ TT K
Sbjct: 333 TTTSVTTQTTTTK 345
>ref|NP_012974.1| nucleosome assembly protein I; Nap1p
sp|P25293|NAP1_YEAST NUCLEOSOME ASSEMBLY PROTEIN
pir||S38122 nucleosome assembly protein I - yeast (Saccharomyces cerevisiae)
emb|CAA82125.1| (Z28273) ORF YKR048c [Saccharomyces cerevisiae]
Length = 417
Score = 36.4 bits (82), Expect = 0.37
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 156 EEPGVSSIKEEDLDRAVADCVLAQNPLLIQMIQGRLRSLLGQYSRYI 296
++ + +I EED +LA PLL+Q IQ RL SL+GQ S Y+
Sbjct: 47 QDDKIGTINEED--------ILANQPLLLQSIQDRLGSLVGQDSGYV 85
>gb|AAA34811.1| (M63555) nucleosome assembly protein [Saccharomyces cerevisiae]
Length = 417
Score = 36.4 bits (82), Expect = 0.37
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 156 EEPGVSSIKEEDLDRAVADCVLAQNPLLIQMIQGRLRSLLGQYSRYI 296
++ + +I EED +LA PLL+Q IQ RL SL+GQ S Y+
Sbjct: 47 QDDKIGTINEED--------ILANQPLLLQSIQDRLGSLVGQDSGYV 85
>pir||A35938 profilaggrin - human (fragments)
Length = 2248
Score = 36.4 bits (82), Expect = 0.37
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Frame = -3
Query: 711 HPPTTRGPYTHGFTHKRACQHTRHQGSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMSPAS 532
HP + RG HG+ H+++ T H GS+ + +T+ R+D+ SR S R+ S +
Sbjct: 297 HPGSRRGG-RHGYHHEQSADSTGHSGSQ-HSHTTTQGRSDA-----SRGSSGSRSTSRET 349
Query: 531 LSRNLLSAIIAELNDDVSSNAHSHYHD-RTGLEGVREFDVGLHLSSENMDRRS------- 376
+ E + D S ++ SH+ + T E R VG SS + R+
Sbjct: 350 RDQ--------EQSGDGSRHSGSHHQEASTRAESSRHSQVGQGESSGSRTSRNQGSSFSQ 401
Query: 375 --GSEIEGVHSRHPDTSRSSKHRG 310
S+ + S S S HRG
Sbjct: 402 DRDSQAQSEDSERRSASASRNHRG 425
>gb|AAA63244.1| (M60494) profilaggrin [Homo sapiens]
Length = 990
Score = 36.4 bits (82), Expect = 0.37
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Frame = -3
Query: 711 HPPTTRGPYTHGFTHKRACQHTRHQGSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMSPAS 532
HP + RG HG+ H+++ T H GS+ + +T+ R+D+ SR S R+ S +
Sbjct: 297 HPGSRRGG-RHGYHHEQSADSTGHSGSQ-HSHTTTQGRSDA-----SRGSSGSRSTSRET 349
Query: 531 LSRNLLSAIIAELNDDVSSNAHSHYHD-RTGLEGVREFDVGLHLSSENMDRRS------- 376
+ E + D S ++ SH+ + T E R VG SS + R+
Sbjct: 350 RDQ--------EQSGDGSRHSGSHHQEASTRAESSRHSQVGQGESSGSRTSRNQGSSFSQ 401
Query: 375 --GSEIEGVHSRHPDTSRSSKHRG 310
S+ + S S S HRG
Sbjct: 402 DRDSQAQSEDSERRSASASRNHRG 425
>gb|AAA36487.1| (M96943) profilaggrin [Homo sapiens]
Length = 1218
Score = 36.0 bits (81), Expect = 0.48
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Frame = -3
Query: 711 HPPTTRGPYTHGFTHKRACQHTRHQGSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMSPAS 532
HP + RG HG+ H+++ T H GS+ + +T+ R+D+ SR S R+ S +
Sbjct: 519 HPGSRRGG-RHGYHHEQSADSTGHSGSQ-HSHTTTQGRSDA-----SRGSSGSRSTSRET 571
Query: 531 LSRNLLSAIIAELNDDVSSNAHSHYHD-RTGLEGVREFDVGLHLSSENMDRRS------- 376
+ E + D S ++ SH+ + T E R VG SS + R+
Sbjct: 572 RDQ--------EQSGDGSRHSGSHHQEASTRAESSRHSQVGQGESSGSRTSRNQGSSFSQ 623
Query: 375 --GSEIEGVHSRHPDTSRSSKHRG 310
S+ + S S S HRG
Sbjct: 624 DRDSQAQSEDSERRSASGSRNHRG 647
>pir||T40114 nucleosome assembly protein - fission yeast (Schizosaccharomyces
pombe)
emb|CAA21169.1| (AL031788) nucleosome assembly protein [Schizosaccharomyces pombe]
Length = 379
Score = 35.6 bits (80), Expect = 0.63
Identities = 21/53 (39%), Positives = 33/53 (61%), Gaps = 3/53 (5%)
Frame = +3
Query: 141 MSSHAEEPGVSSIKEEDLDRAVADCV---LAQNPLLIQMIQGRLRSLLGQYSRYIE 299
+S A E +++ + D++ D V L NP ++ MI+GRL SL+G+ S YIE
Sbjct: 30 LSKAALEKARQTLQSQLEDKSAHDEVSGLLRNNPAMLSMIEGRLSSLVGKSSGYIE 85
>dbj|BAA13932.1| (D89271) similar to Saccharomyces cerevisiae nucleosome assembly
protein, SWISS-PROT Accession Number p25293
[Schizosaccharomyces pombe]
Length = 353
Score = 35.6 bits (80), Expect = 0.63
Identities = 21/53 (39%), Positives = 33/53 (61%), Gaps = 3/53 (5%)
Frame = +3
Query: 141 MSSHAEEPGVSSIKEEDLDRAVADCV---LAQNPLLIQMIQGRLRSLLGQYSRYIE 299
+S A E +++ + D++ D V L NP ++ MI+GRL SL+G+ S YIE
Sbjct: 4 LSKAALEKARQTLQSQLEDKSAHDEVSGLLRNNPAMLSMIEGRLSSLVGKSSGYIE 59
>gb|AAF46652.1| (AE003452) CG10543 gene product [Drosophila melanogaster]
Length = 1301
Score = 35.2 bits (79), Expect = 0.83
Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 4/203 (1%)
Frame = -3
Query: 816 LVLYRQTQHGSTPPTQSKXXXXXXXXXXXHRNRATHPPTTRGPYTHGFTHKRACQHTRHQ 637
LV ++QT HG+ PP K P GP + K A + Q
Sbjct: 962 LVRHKQTMHGNEPPPPKKGKQRFPKTSEEDMGSL---PDMPGPPPVKASKKAATSKAKAQ 1018
Query: 636 GSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMSPASLSRNLLSAIIAELNDDVSSNAHSHY 457
+ ++ + + + P + +P L ++ +A + N SS A +
Sbjct: 1019 AAAAAAAAASSQQQQQKGSAATPTPPPPVSTTPGCLQQDPFNAAMVSSNSSQSSTASTSQ 1078
Query: 456 HDRTGLEGVREFDVGLHLSSENMDRRSGSEIEGVHSRHPDTSRSSKHRGRKVTRCSV--- 286
H + E + ++E +H +HP + + ++ + ++
Sbjct: 1079 HSVSTSESQQNSIYNQSFNAEKQQPGQQQPQNTLHQQHPTPPPPQQQQQQQQQQQALPQS 1138
Query: 285 NIGPREI-VGAPESFG*AAGFGREHSP 208
+GP E+ + SFG F E +P
Sbjct: 1139 RVGPGELHLQRMNSFGQDGQFHFESNP 1165
>gb|AAF49425.1| (AE003526) CG9692 gene product [Drosophila melanogaster]
Length = 382
Score = 34.8 bits (78), Expect = 1.1
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = -3
Query: 786 STPPTQSKXXXXXXXXXXXHRNRATHPPTTRGPYTHGFTHKRACQHTRHQGSRLPTRPST 607
S PPTQSK RN A PP +R T + G S
Sbjct: 207 SIPPTQSKTHNIQLNPK---RNMAQVPPQSRDA-----TVSNKSNNLAPPGGNKKKPKSK 258
Query: 606 RIRNDSRQQPRSRAGSPRRTMSPASLSRNLLSAIIAELNDDVSSNAH-SHYHDR 448
+ + + QPRS A SP + SP SLS + + +D SNA+ H+H++
Sbjct: 259 KSQKLKQNQPRSEATSPEQPASPKSLSPCDNQSSPPKFSD---SNAYLDHHHEK 309
>gb|AAD17450.1| (AC006284) unknown protein [Arabidopsis thaliana]
Length = 443
Score = 34.4 bits (77), Expect = 1.4
Identities = 23/79 (29%), Positives = 27/79 (34%)
Frame = -1
Query: 797 HNMDQHHRLNPSPTPPHXPRKQHTGTERHTPPQPVVHIHTALHTKEHANTRDTKAADFRH 618
H + HH P PPH Q T PPQP+ H H T T D H
Sbjct: 342 HQVHHHHTNTAGPPPPHFCSSQEFYT-TPPPPQPLHHHHFQTFNGSSGGTAST---DSTH 397
Query: 617 DPVQG*EMTRGSNPDHEQG 561
V G +P+ G
Sbjct: 398 HQVTDSPTVEGKSPESGGG 416
>gb|AAC23891.1| (AF071208) transition protein 2 [Canis familiaris]
Length = 129
Score = 34.0 bits (76), Expect = 1.9
Identities = 17/40 (42%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Frame = -1
Query: 806 TARHNMDQHHRLNPSPTPPHXPRKQ-HTGTERHTPPQPVVH 687
T H+ H +P PT P PR Q HT H PP+P H
Sbjct: 53 TGHHSSSGHQSQSPHPTLP--PRHQKHTRHSHHCPPRPTTH 91
>gb|AAF51393.1| (AE003587) CG5011 gene product [Drosophila melanogaster]
Length = 80
Score = 34.0 bits (76), Expect = 1.9
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 782 HHRLNPSP--TPPHXPRKQHTGTERHTPPQPVVH--IHTALHTKEHANT 648
HH NP P PPH P H G H PQP H +H H H N+
Sbjct: 7 HHHHNPPPHGPPPHGP--PHHGPPHH-EPQPPFHTPVHPIYHEPPHGNS 52
>pir||S55645 transcription control protein 50 - equine herpesvirus 2
gb|AAC13838.1| (U20824) ORF 50 [Equine herpesvirus 2]
Length = 630
Score = 34.0 bits (76), Expect = 1.9
Identities = 24/86 (27%), Positives = 42/86 (47%), Gaps = 4/86 (4%)
Frame = -2
Query: 778 TDSIQAPHRHTTPANNTPEPSDTPPHNPWSIYTRLYTQKSMP---THATPRQQTSDTTQY 608
T S Q R TP ++PEP+D P ++ TR + + ++ P ++ Q+
Sbjct: 525 TPSPQMQQRQLTP-QSSPEPADEEEEGPLNLTTRTEDHEILEEILSNLYPEERRQQEQQH 583
Query: 607 KDKK*LEAATPITSRESA-PHDESGQLKQE 521
+ + A+P E A P ++SG+ QE
Sbjct: 584 QQGEEAAPASPSQHEEQAGPSNQSGETSQE 613
>ref|NP_006412.1| brefeldin A-inhibited guanine nucleotide-exchange protein 1
gb|AAD38427.1| (AF084520) brefeldin A-inhibited guanine nucleotide-exchange
protein 1 [Homo sapiens]
Length = 1849
Score = 34.0 bits (76), Expect = 1.9
Identities = 23/73 (31%), Positives = 30/73 (40%), Gaps = 1/73 (1%)
Frame = -1
Query: 785 QHHRLNPSPTPPHXPRKQHTGTERHTPPQPVVHIHTALHTKEHANTRDT-KAADFRHDPV 609
QHH L PSP H P R+ PPQ V HI +T D K+ +P
Sbjct: 227 QHHHLLPSPVSHHEPESPQL---RYLPPQTVDHISQEHEGDLDLHTNDVDKSLQDDTEPE 283
Query: 608 QG*EMTRGSNPDHE 567
G +++ N E
Sbjct: 284 NGSDISSAENEQTE 297
>gb|AAF68672.1|AF239995_2 (AF239995) L8530.3 [Leishmania major]
Length = 1960
Score = 33.6 bits (75), Expect = 2.4
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = -3
Query: 717 ATHPPTTRGPYTHGFTHKRACQHTRHQGSRLPTRPSTRIRNDSRQ--QPRSRAGSPRRTM 544
A HP TT+ ++ + + +H + SR PSTR + R+ S A PRR
Sbjct: 1644 ARHPATTKPAFSGLASAPASQRHLSGESSRGAAAPSTRDLDVCRRGGGGNSAAAPPRRRY 1703
Query: 543 SPASLSRN--LLSAIIAELNDDVSSNAHSHYHDR 448
P SLSR+ LLS A + +++S H R
Sbjct: 1704 PPRSLSRDEPLLSPGAAAASANLASPHAYHAPQR 1737
>emb|CAB89674.1| (AL354592) hypothetical protein L8138.08 [Leishmania major]
Length = 1960
Score = 33.6 bits (75), Expect = 2.4
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = -3
Query: 717 ATHPPTTRGPYTHGFTHKRACQHTRHQGSRLPTRPSTRIRNDSRQ--QPRSRAGSPRRTM 544
A HP TT+ ++ + + +H + SR PSTR + R+ S A PRR
Sbjct: 1644 ARHPATTKPAFSGLASAPASQRHLSGESSRGAAAPSTRDLDVCRRGGGGNSAAAPPRRRY 1703
Query: 543 SPASLSRN--LLSAIIAELNDDVSSNAHSHYHDR 448
P SLSR+ LLS A + +++S H R
Sbjct: 1704 PPRSLSRDEPLLSPGAAAASANLASPHAYHAPQR 1737
>pir||T29980 hypothetical protein F11G11.10 - Caenorhabditis elegans
gb|AAB37841.1| (U80451) Similar to collagen [Caenorhabditis elegans]
Length = 283
Score = 33.2 bits (74), Expect = 3.2
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 2/70 (2%)
Frame = -3
Query: 393 NMDRRSGSEIEGVHSRHPDTSRSSKHRGRKVTR--CSVNIGPREIVGAPESFG*AAGFGR 220
N R + G +++ D R ++ R ++ T CS IGP VG P G GR
Sbjct: 54 NFCRTRSDSLRGEYTKL-DQFRKTESREKRQTYQCCSCGIGPAGSVGNPGQDGAPGNDGR 112
Query: 219 EHSPRQHGPDPP 184
+P GPD P
Sbjct: 113 PGAPGAPGPDAP 124
>pir||T29982 hypothetical protein F11G11.12 - Caenorhabditis elegans
gb|AAB37843.1| (U80451) Similar to collagen [Caenorhabditis elegans]
Length = 285
Score = 33.2 bits (74), Expect = 3.2
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 2/70 (2%)
Frame = -3
Query: 393 NMDRRSGSEIEGVHSRHPDTSRSSKHRGRKVTR--CSVNIGPREIVGAPESFG*AAGFGR 220
N R + G +++ D R ++ R ++ T CS IGP VG P G GR
Sbjct: 56 NFCRTRSDSLRGEYTKL-DQFRKAESREKRQTYQCCSCGIGPAGSVGNPGQDGAPGNDGR 114
Query: 219 EHSPRQHGPDPP 184
+P GPD P
Sbjct: 115 PGAPGAPGPDAP 126
>pir||T39146 hypothetical protein SPAC8C9.09c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB16297.1| (Z99168) hypothetical protein [Schizosaccharomyces pombe]
Length = 302
Score = 32.8 bits (73), Expect = 4.2
Identities = 25/85 (29%), Positives = 34/85 (39%), Gaps = 2/85 (2%)
Frame = -2
Query: 760 PHRHTTPANNTPEPSDTPPHNPWSIYTRLYTQKSMPTHATPRQQTSDTTQYKDKK*LEAA 581
P H P NN H WS++T Y QK+ +P QQ D+ +
Sbjct: 165 PAFHFLPMNNKESF-----HYAWSLFTSTYFQKAATVSPSPNQQPVDSVANPQLRKASEI 219
Query: 580 TPITSRESAP--HDESGQLKQEPPECH 506
T I+SR + L QE P+ H
Sbjct: 220 TTISSRSDVDILLGKFKALIQESPDEH 246
>pir||JW0067 chitinase (EC 3.2.1.14) A - Emericella nidulans
Length = 660
Score = 32.8 bits (73), Expect = 4.2
Identities = 49/216 (22%), Positives = 78/216 (35%), Gaps = 5/216 (2%)
Frame = -3
Query: 801 QTQHGSTPPTQSKXXXXXXXXXXXHRNRATHPPTTRGPYTHGFTHKRACQHTR-HQGSRL 625
+T + PT S + T+ T + RA T H +
Sbjct: 449 ETPSETKTPTSSSAPPLSSSSPVGGSSSTASSSTSTPSETPSTSSTRAVSETSTHISTST 508
Query: 624 PTRPSTRIRNDSRQQPRSRAGSPRRTMSPASLSRNLLSAIIAEL-NDDVSSNAHSHYHDR 448
+ P T + S P + + P +SP+S + +I+E V+S++ S +
Sbjct: 509 SSGPETSLTGSSTSVPATSSSVPSSAISPSS------TPVISETPRPPVTSSSSSTFVSS 562
Query: 447 TGLE---GVREFDVGLHLSSENMDRRSGSEIEGVHSRHPDTSRSSKHRGRKVTRCSVNIG 277
T +G H SS + S S S P+T+++ R+ C
Sbjct: 563 TSTSTDCSESSTAIGTHSSSSIWETPSASTPAASPSTSPETTKTLTVFPRRAPPCLPEPP 622
Query: 276 PREIVGAPESFG*AAGFGREHSPRQHGPDPPP*C*RHRAPQ 154
PR + P F A R+ P Q PP RH AP+
Sbjct: 623 PRPL--CPALFPQLAVATRKPQPCQ-----PPVPTRHPAPR 656
>gb|AAD29829.1|AC006202_7 (AC006202) putative proline/hydroxyproline-rich glycoprotein
[Arabidopsis thaliana]
Length = 653
Score = 32.8 bits (73), Expect = 4.2
Identities = 41/182 (22%), Positives = 70/182 (37%), Gaps = 11/182 (6%)
Frame = -3
Query: 726 RNRATHPPTTRGPYT--HGFTHKRACQHTRHQGSRLPTRPSTR----IRNDSRQQPRSRA 565
++ AT T R P + H ++A Q RH S P RPS + + + +P A
Sbjct: 272 KSAATDTATVRAPRSSQHSTQQQQAVQTNRHMNSTAPPRPSVTAAEPMNSAAPPRPSVTA 331
Query: 564 GSPRRTMSPASLSRNLLSAIIAELNDDVSSNAHSHYHDRTGLEGVREFDVGLHLSSENMD 385
P + +P S A L+ + H + + + + + S +
Sbjct: 332 AEPMNSTAPPRPSVTAAEATPPNLSAPL---PHCNTPQPSPISQQAAVESNTQMQSTALP 388
Query: 384 RRS-GSEIEGVHSRHPDTSRSSKHRGRKVTRCSVNIG----PREIVGAPESFG*AAGFGR 220
R S +E +H H +TS+ + + + + NI PR + A
Sbjct: 389 RPSVTAEARPLHQPHSNTSQPRPIPQQALAQSNTNITSTALPRPSITAEARL-------- 440
Query: 219 EHSPRQHGPDPPP 181
H P + P P P
Sbjct: 441 LHQPHSNTPQPRP 453
>gb|AAB18341.1| (U75467) Atu [Drosophila melanogaster]
Length = 724
Score = 32.8 bits (73), Expect = 4.2
Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 6/161 (3%)
Frame = -3
Query: 672 THKRACQHTRHQGSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMSPASLSRNLLSAIIAEL 493
+H+ +R GS R + S R+GS S ++ SR SA
Sbjct: 109 SHRSGSLQSRKSGSPQSRRSGSPQSRKSGSTHSRRSGSAHSRRSGSARSRKSGSA----Q 164
Query: 492 NDDVSSNAHSHYHDRTGLEGVREFDVGLHLSSENMDRRSGSEIEGVHSRHPDTSRSSKHR 313
+D S + SH G E R L + E + +SGS SR SR+S+ R
Sbjct: 165 SDRSESRSRSHSGSLKGNEESRSNSPNLQIDVERANSKSGSR---SRSRSRSGSRTSRSR 221
Query: 312 GRKVT------RCSVNIGPREIVGAPESFG*AAGFGREHSPRQHGPD 190
+ T R G VG P+ A G + ++ G D
Sbjct: 222 SKTGTPSPNRSRSGSASGSGSDVGVPKKKARKAS-GSDQEKKKSGSD 267
>gb|AAF51991.1| (AE003602) Atu gene product [Drosophila melanogaster]
Length = 725
Score = 32.8 bits (73), Expect = 4.2
Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 6/161 (3%)
Frame = -3
Query: 672 THKRACQHTRHQGSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMSPASLSRNLLSAIIAEL 493
+H+ +R GS R + S R+GS S ++ SR SA
Sbjct: 110 SHRSGSLQSRKSGSPQSRRSGSPQSRKSGSTHSRRSGSAHSRRSGSARSRKSGSA----Q 165
Query: 492 NDDVSSNAHSHYHDRTGLEGVREFDVGLHLSSENMDRRSGSEIEGVHSRHPDTSRSSKHR 313
+D S + SH G E R L + E + +SGS SR SR+S+ R
Sbjct: 166 SDRSESRSRSHSGSLKGNEESRSNSPNLQIDVERANSKSGSR---SRSRSRSGSRTSRSR 222
Query: 312 GRKVT------RCSVNIGPREIVGAPESFG*AAGFGREHSPRQHGPD 190
+ T R G VG P+ A G + ++ G D
Sbjct: 223 SKTGTPSPNRSRSGSASGSGSDVGVPKKKARKAS-GSDQEKKKSGSD 268
>pir||S58380 probable RNA-directed DNA polymerase (EC 2.7.7.49) - Crithidia
fasciculata retrotransposon CRE2
gb|AAB40036.1| (U19151) putative reverse transcriptase; contains putative reverse
transcriptase domain and two putative metal-binding
domains [Crithidia fasciculata]
Length = 2517
Score = 32.1 bits (71), Expect = 7.2
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = -1
Query: 767 PSPTPPHXPRKQHTGTERHTPPQPVVHIHTALHTKEHANTRDTKAADFRHDPVQG 603
P PTPPH + PPQ T L A TRDT+A D + P +G
Sbjct: 97 PVPTPPHTGTTTPATHQSEAPPQ------TGL-----ATTRDTRATDRKQTPQRG 140
>sp|P50809|VE2_HPV36 REGULATORY PROTEIN E2
gb|AAA79439.1| (U31785) regulatory protein E2 [Human papillomavirus type 36]
Length = 509
Score = 32.1 bits (71), Expect = 7.2
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Frame = -3
Query: 684 THGFTHKRACQHTRHQGSRLPTRPSTRIRNDSRQQ---------PRSRAGSPRRTMSPAS 532
T T Q T +G + RPS+R R +Q RSR+ S R+ +P +
Sbjct: 230 TKQLTTSEQPQQTETKGRKYGRRPSSRTRRPQAKQRRSRSRHRSSRSRSRSQSRSHTPTT 289
Query: 531 LS---RNLLSAIIAELNDDVSSNAHSHYHDRTGLEGVREFDVGLHLSSENMDRRSGSEIE 361
S R+ ++ VS+ + S R G R S+ ++RS E
Sbjct: 290 RSATTRSRSPSLAKTGVQRVSTRSRSRSTSRRGGRRRRSRSPSTSSSTTTTNKRSRVRAE 349
Query: 360 GVHSRHPDTSRSSK---HRGRKVTRCSVNIGPREIVGAPESFG*AAGFGREHSPRQHGPD 190
SR R ++ GR+ R S + P A REHS R G
Sbjct: 350 TTGSRGARGGRGARGGSGGGRRRGRSSSSTSP------------AHKRSREHSVRSRGVS 397
Query: 189 P 187
P
Sbjct: 398 P 398
>gb|AAC34383.1| (AF056116) All-1 related protein [Takifugu rubripes]
Length = 4823
Score = 32.1 bits (71), Expect = 7.2
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -3
Query: 645 RHQGSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMSPASLSRNLLS 511
RH RLP RP R QPR+R P++TMS +S++ +S
Sbjct: 2112 RHNAQRLPLRPQFMPRGP---QPRARLFVPQQTMSAPYISQHPIS 2153
>gb|AAF46624.1| (AE003452) CG15226 gene product [Drosophila melanogaster]
Length = 418
Score = 32.1 bits (71), Expect = 7.2
Identities = 30/91 (32%), Positives = 39/91 (41%), Gaps = 3/91 (3%)
Frame = -2
Query: 817 SCSLPPDTTWINTTDSIQAPHRHTTPANNTPEPSDT-PPHNPWSIYTRLYTQKSMPTH-A 644
S + PDTT +T S P TP +T P+ T P ++ T+ T S T A
Sbjct: 244 STTAAPDTTSSTSTTSTANPTSTATPTTSTAIPTSTGSPTTSTAVATQSTTTASPTTSTA 303
Query: 643 TPRQQTSDTTQYK-DKK*LEAATPITSRESAPHD 545
SDTT + A+P TS AP D
Sbjct: 304 VATSDGSDTTSTAVATQTTTTASPTTSTAVAPAD 337
>ref|NP_011024.1| ubiquitin carboxyl-terminal hydrolase; Ubp9p
sp|P39967|UBP9_YEAST UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 9 (UBIQUITIN THIOLESTERASE 9)
(UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9)
(DEUBIQUITINATING ENZYME 9)
pir||S50601 hypothetical protein YER098w - yeast (Saccharomyces cerevisiae)
gb|AAB64653.1| (U18839) Ubp9p: ubiquitin carboxyl-terminal hydrolase
[Saccharomyces cerevisiae]
Length = 754
Score = 32.1 bits (71), Expect = 7.2
Identities = 25/97 (25%), Positives = 40/97 (40%), Gaps = 6/97 (6%)
Frame = -3
Query: 666 KRACQHTRHQGSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMSPASLSRNLLS----AIIA 499
K++ QG+ R +T ++ S A SP S +S+ NL S + +
Sbjct: 11 KKSHPEKNTQGNDEINRKATSLKKTKGSGDPSIAKSPSAKSSTSSIPSNLASHERRSKFS 70
Query: 498 ELNDDVSSNAH--SHYHDRTGLEGVREFDVGLHLSSENMDRRS 376
D+++ N H HYH+ RE+D D S
Sbjct: 71 SQTDNLAGNKHYHEHYHNMASTSDEREYDSSTTYEDRAFDTES 113
>gb|AAC45813.1| (AF015088) ORF2 [Rhodococcus erythropolis]
Length = 202
Score = 32.1 bits (71), Expect = 7.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 752 PHXPRKQHTGTERHTPPQPVVHIHTALHTKEHANTRDTKAA 630
P P++Q G RH P Q V +HT H + A D + A
Sbjct: 51 PLQPQRQSAGLPRHNPRQRHVGLHTCSHREAFAGQIDPRGA 91
>gb|AAF53547.1| (AE003652) CG4668 gene product [alt 1] [Drosophila melanogaster]
Length = 1312
Score = 32.1 bits (71), Expect = 7.2
Identities = 20/63 (31%), Positives = 28/63 (43%)
Frame = -1
Query: 758 TPPHXPRKQHTGTERHTPPQPVVHIHTALHTKEHANTRDTKAADFRHDPVQG*EMTRGSN 579
T H H+ HT PQP H H+ H+ N RD ++ + ++ E R SN
Sbjct: 107 THTHAHSHSHSHAHSHTHPQP--HAHSP-HSPSPPNYRDERSQRQHNKLLRKLEKQRESN 163
Query: 578 PDH 570
P H
Sbjct: 164 PPH 166
>gb|AAF53546.1| (AE003652) CG4668 gene product [alt 2] [Drosophila melanogaster]
Length = 1323
Score = 32.1 bits (71), Expect = 7.2
Identities = 20/63 (31%), Positives = 28/63 (43%)
Frame = -1
Query: 758 TPPHXPRKQHTGTERHTPPQPVVHIHTALHTKEHANTRDTKAADFRHDPVQG*EMTRGSN 579
T H H+ HT PQP H H+ H+ N RD ++ + ++ E R SN
Sbjct: 118 THTHAHSHSHSHAHSHTHPQP--HAHSP-HSPSPPNYRDERSQRQHNKLLRKLEKQRESN 174
Query: 578 PDH 570
P H
Sbjct: 175 PPH 177
>gb|AAB51284.1| (U91682) vitelline membrane protein homolog [Aedes aegypti]
Length = 122
Score = 32.1 bits (71), Expect = 7.2
Identities = 22/57 (38%), Positives = 23/57 (39%), Gaps = 2/57 (3%)
Frame = -1
Query: 782 HHRLNPSPTPPHXPRKQHTGTERHTPPQPVVHIHT--ALHTKEHANTRDTKAADFRHDP 612
HH P P PP H G H P PVVH + A H K AN A H P
Sbjct: 37 HHAHPPPPPPPPA----HYGHHAHPAPAPVVHTYPVHAPHAKCGANLLVGCAPSVAHAP 91
>pir||B36664 S59/4 homeotic protein - fruit fly (Drosophila melanogaster)
Length = 659
Score = 32.1 bits (71), Expect = 7.2
Identities = 14/46 (30%), Positives = 19/46 (40%)
Frame = -1
Query: 818 FLFSTARHNMDQHHRLNPSPTPPHXPRKQHTGTERHTPPQPVVHIH 681
FL + +H QHH+ + P PH + H H P P H
Sbjct: 194 FLAAAQQHMHHQHHQHHQHPAHPHSHQHPHPHPHPHPHPHPSAVFH 239
>pir||T12483 hypothetical protein DKFZp564B0769.1 - human (fragment)
emb|CAB45767.1| (AL080186) hypothetical protein [Homo sapiens]
Length = 299
Score = 31.7 bits (70), Expect = 9.4
Identities = 23/84 (27%), Positives = 38/84 (44%)
Frame = -3
Query: 618 RPSTRIRNDSRQQPRSRAGSPRRTMSPASLSRNLLSAIIAELNDDVSSNAHSHYHDRTGL 439
R R R+ SR++ RSR+ S R + AS SR+ I + ++S N+H H +
Sbjct: 98 RERRRNRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKER 157
Query: 438 EGVREFDVGLHLSSENMDRRSGSE 367
E +E + + D+ E
Sbjct: 158 ERKKERSRSIDKDRKKKDKERERE 181
>sp||MUC3_HUMAN_1 [Segment 1 of 2] MUCIN 3 (INTESTINAL MUCIN 3)
pir||A35690 mucin (clone SIB124) - human (fragment)
gb|AAA63772.1| (M55405) mucin [Homo sapiens]
Length = 128
Score = 31.7 bits (70), Expect = 9.4
Identities = 25/68 (36%), Positives = 33/68 (47%), Gaps = 19/68 (27%)
Frame = -2
Query: 817 SCSLPPDTTWINTTDSIQAPHR-------------------HTTPANNTPEPSDTPPHNP 695
S S P T+ I TTDSI H+TP+ T S P +
Sbjct: 26 SSSTPSFTSSITTTDSIVTTETTYHSTPSFTSLITITETTSHSTPSYTTSITSTKTPSHS 85
Query: 694 WSIYTRLYTQKSMPTHATPRQQTSDTT 614
YT T +P+H+TP +S T
Sbjct: 86 TPSYTTSITTTEIPSHSTPSFTSSIIT 112
>ref|NP_057889.1| suppressor of white apricot homolog 2-pending
gb|AAC82338.1| (AF042799) suppressor of white apricot homolog 2 [Mus musculus]
Length = 612
Score = 31.7 bits (70), Expect = 9.4
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 696 RGPYTHGFTHKRACQHTRHQGSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMSP--ASLSR 523
RGP H +H R+ SR TR +R ++ SR + +S + S + SP L+R
Sbjct: 463 RGPRHHSSSHSRSSWSLSPSRSRSVTRSGSRSQSRSRSRSQSHSQSQSHSPSPPREKLTR 522
Query: 522 NLLSAIIAE 496
S + E
Sbjct: 523 PAASPAVGE 531
>ref|NP_005798.1| megakaryocyte stimulating factor; musculin
gb|AAB09089.1| (U70136) megakaryocyte stimulating factor; MSF [Homo sapiens]
Length = 1404
Score = 31.7 bits (70), Expect = 9.4
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = -2
Query: 805 PPDTTWINTTDSIQAPHRHTTPANNTP-EPSDTPPHNPWSIYTRLYTQKSMPTHATPRQQ 629
P T TT +P PA TP EP+ T P P T P TP++
Sbjct: 539 PTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAP------TTPKEPAPTTPKEP 592
Query: 628 TSDTTQYKDKK*LEAATPITSRESAP 551
TT+ + P T +E+AP
Sbjct: 593 APTTTKKPAPTAPKEPAPTTPKETAP 618
>sp|Q00111|VG45_HSVI1 HYPOTHETICAL GENE 45 PROTEIN
pir||A36791 hypothetical protein ORF45 - ictalurid herpesvirus 1 (strain auburn
1)
gb|AAA88148.1| (M75136) ORF 45 [Ictalurid herpesvirus 1]
Length = 240
Score = 31.7 bits (70), Expect = 9.4
Identities = 27/85 (31%), Positives = 33/85 (38%)
Frame = +2
Query: 191 SGPCCRGLCSRPKPAAYPNDSGAPTISLGPIFTLHRVTFRPLCFDDLLVSGCLLWTPSIS 370
+GPCC L + P P P P +RV P C P++S
Sbjct: 53 NGPCCSTLWAGPVPGYVITQFVPPVTYPNP----YRVVAAPGC----APGSEWCEPPTVS 104
Query: 371 EPDRLSMFSDERWRPTSNSLTPSRP 445
P S FSDE PTS L P+ P
Sbjct: 105 APPPPSQFSDE---PTSPELAPAVP 126
>pir||T03301 rab3 effector protein Rim - rat
gb|AAB66703.1| (AF007836) rab3 effector [Rattus norvegicus]
Length = 1553
Score = 31.7 bits (70), Expect = 9.4
Identities = 47/180 (26%), Positives = 66/180 (36%), Gaps = 6/180 (3%)
Frame = -3
Query: 720 RATHPPTTRGPYTHGFTHKRACQHTRHQGSRLPTRPSTRIRNDSRQQPRSRAGSPRRTMS 541
R + T P TH R+ + H+G RP +R+ N Q+ RR+ S
Sbjct: 945 RESKATTLTVPEQQRTTHHRSRSVSPHRGDD-QGRPRSRLPNVPLQRSLDEIHPTRRSRS 1003
Query: 540 PA---SLSRNLLSAIIAELNDDVSSNAHSHYHDRTGLEGVREFDVGLHLSSENMDRRSGS 370
P SR+ + SS S + R + LH++SE +
Sbjct: 1004 PTRHHDASRSPADHRSRHVESQYSSEPDSELLMLPRAKRGRSAE-SLHMTSELQPSLDRA 1062
Query: 369 EIEGVHSRHPDTSRSSKHR---GRKVTRCSVNIGPREIVGAPESFG*AAGFGREHSPRQH 199
+ PDTS S R RK RCS+ R+ G A+ R H RQ
Sbjct: 1063 RSASTNCLRPDTSLHSPERERHSRKSERCSIQKQSRK--------GTASDADRTH--RQG 1112
Query: 198 GPDPPP 181
P P
Sbjct: 1113 SPTQSP 1118
>emb|CAB56375.1| (AL118514) putative lipoprotein [Streptomyces coelicolor A3(2)]
Length = 185
Score = 31.7 bits (70), Expect = 9.4
Identities = 27/82 (32%), Positives = 34/82 (40%), Gaps = 7/82 (8%)
Frame = -2
Query: 760 PHRHTTPA------NNTPEPSDTPPHNPWSIYTRLYTQKSMPTHATPRQQTSDTTQYKDK 599
P H T A N+ PEP+ TPP P TR + PT P T D T
Sbjct: 106 PAAHPTGAPPPNGGNHGPEPTRTPPAEP----TRTAEPEPTPTEEPPASPTPDPT----- 156
Query: 598 K*LEAATPITSRESAPHDESG-QLKQEPP 515
+ S+ H+ G QL+Q P
Sbjct: 157 --------VAEPSSSAHEPPGTQLEQREP 177
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 269366093
Number of Sequences: 509459
Number of extensions: 6603698
Number of successful extensions: 24668
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 24614
Number of HSP's gapped (non-prelim): 87
length of query: 275
length of database: 159,777,284
effective HSP length: 55
effective length of query: 220
effective length of database: 131,757,039
effective search space: 28986548580
effective search space used: 28986548580
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)