Score E
Sequences producing significant alignments: (bits) Value
gb|AAA86754.1| (U39049) Hmp1 [Ustilago maydis] 59 6e-08
emb|CAB85690.1| (AJ271696) mismatched base pair and crucifo... 54 1e-06
gb|AAB96651.1| (AF034574) putative cruciform DNA binding pr... 53 4e-06
gb|AAF57031.1| (AE003773) CG9682 gene product [Drosophila m... 40 0.024
gb|AAF39664.1| (AE002353) conserved hypothetical protein [C... 39 0.054
pir||T23754 hypothetical protein T05C12.10 - Caenorhabditis... 36 0.36
gb|AAB66420.1| (U97553) unknown [murid herpesvirus 4] 36 0.47
gb|AAB66422.1| (U97553) unknown [murid herpesvirus 4] 36 0.47
emb|CAB87943.1| (AL163912) glycine-rich protein atGRP-6 [Ar... 36 0.47
gb|AAB66421.1| (U97553) unknown [murid herpesvirus 4] 36 0.47
emb|CAA12026.1| (AJ224518) LEA protein [Cicer arietinum] 35 0.81
pir||A35419 neutrophil protein - pig (fragment) >gi|164673|... 35 0.81
emb|CAB61195.1| (AL132973) hypothetical protein SCF91.38c. ... 34 1.8
pir||G70917 hypothetical glycine-rich protein Rv1452c - Myc... 34 1.8
emb|CAA12027.1| (AJ224519) LEA PROTEIN [Cicer arietinum] 34 1.8
gb|AAF13619.1|AF188935_17 (AF188935) pXO2-14 [Bacillus anth... 34 2.4
pir||T03516 probable outer membrane secretion protein - Rho... 34 2.4
emb|CAB70821.1| (AL137579) hypothetical protein [Homo sapiens] 33 3.1
ref|NP_032917.1| pinin >gi|2570049|emb|CAA69960.1| (Y08701)... 33 3.1
pir||T00705 N-chimerin homolog F25965_3 - human >gi|2477513... 33 3.1
emb|CAB66197.1| (AL136502) putative integral membrane prote... 33 3.1
emb|CAA70874.1| (Y09703) MEMA [Homo sapiens] 33 4.1
emb|CAA71377.1| (Y10351) nuclear protein SDK3 [Homo sapiens] 33 4.1
gb|AAF17209.1|AF112222_1 (AF112222) nuclear protein SDK3 [H... 33 4.1
gb|AAA18802.1| (L02374) S-antigen [Plasmodium falciparum] 32 5.4
gb|AAD43469.1|AF113610_1 (AF113610) UspA1 [Moraxella catarr... 32 5.4
gb|AAD43467.1|AF113608_1 (AF113608) UspA1 [Moraxella catarr... 32 5.4
gb|AAB48303.1| (U77716) pinin [Canis familiaris] 32 5.4
ref|NP_002678.1| pinin, desmosome associated protein >gi|16... 32 7.0
dbj|BAA74876.1| (AB020660) KIAA0853 protein [Homo sapiens] 32 7.0
pir||A28444 filaggrin precursor - mouse (fragment) 32 7.0
pir||T30898 receptor-like histidine kinase - Rhodococcus er... 32 9.2
pir||T28655 receptor-like histidine kinase BpdS - Rhodococc... 32 9.2
sp|P31568|YCF2_OENPI HYPOTHETICAL PROTEIN (ORF 2280) >gi|41... 32 9.2
dbj|BAA25609.1| (D88015) Unknown [Rhodococcus erythropolis] 32 9.2
>gb|AAA86754.1| (U39049) Hmp1 [Ustilago maydis]
Length = 98
Score = 58.9 bits (140), Expect = 6e-08
Identities = 31/99 (31%), Positives = 49/99 (49%)
Frame = +3
Query: 129 DPNRTEGSWNQTAGSAKETIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSGIGDRV 308
+P++ G++N AG+ KETIG +G+ + G+EQ+ +G + Q G D+V
Sbjct: 3 EPSKVNGNYNSVAGTVKETIGNALGSTEWQKAGKEQHAKGEGEIKAAQAQGYAEGTKDQV 62
Query: 309 QGTAGGAVFNLAGDKEKEAHYDELHAEGKSRQHGVGAQR 425
G V + GDK KE GK++Q AQ+
Sbjct: 63 SGKIDNVVGAVTGDKSKE-------LSGKAQQESGKAQK 94
>emb|CAB85690.1| (AJ271696) mismatched base pair and cruciform DNA recognition
protein [Agaricus bisporus]
Length = 109
Score = 54.3 bits (128), Expect = 1e-06
Identities = 25/95 (26%), Positives = 47/95 (49%)
Frame = +3
Query: 120 AKDDPNRTEGSWNQTAGSAKETIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSGIG 299
A +P++ G N G+AKET+G + G SL Q G+E + G + Q G+
Sbjct: 11 ASSEPSKVSGQLNSAMGTAKETVGKMTGATSLQQSGKEDHAAGEAENKAAQTKGHAEGMT 70
Query: 300 DRVQGTAGGAVFNLAGDKEKEAHYDELHAEGKSRQ 404
D++ G + + GDK+++ + +G++ +
Sbjct: 71 DQIAGKKDSMIGAMTGDKKQQTSGNMREDKGQAEK 105
>gb|AAB96651.1| (AF034574) putative cruciform DNA binding protein [Glomus
versiforme]
Length = 99
Score = 52.7 bits (124), Expect = 4e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 15/80 (18%)
Frame = +3
Query: 129 DPNRTEGSWNQTAGSAKETIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSGIGDRV 308
+P+R + + G+ KETIG IGNE + +G+ + LEG + Q G+ D V
Sbjct: 3 EPSRVDANSKYYQGAVKETIGKAIGNEQMEAEGKAKKLEGEGEYKAAQTKGQAEGVKDSV 62
Query: 309 QGT---------------AGGAVFNLAGDKEKEAH 368
GT A G + GD +KEAH
Sbjct: 63 TGTVKENTGKAIGNQQMQAEGNITKNTGDAKKEAH 97
>gb|AAF57031.1| (AE003773) CG9682 gene product [Drosophila melanogaster]
Length = 456
Score = 40.2 bits (92), Expect = 0.024
Identities = 32/115 (27%), Positives = 48/115 (40%)
Frame = +3
Query: 21 AGDLKKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQTAGSAKETIGGLI 200
AGD + HDA++A +++GS A A D G+ A +A +
Sbjct: 285 AGDASNAAGDVAHDAANA-----AGSVAGSAANAAGDVANAAGNVAGDAANAAGDVAHAA 339
Query: 201 GNESLNQQGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKEA 365
GN + + N+ G A G D+ S G+ V G+ A N+AGD A
Sbjct: 340 GNAAGDVANAAGNVAGNASNAAG---DVASAAGN-VAGSVANAAGNVAGDAANAA 390
Score = 38.7 bits (88), Expect = 0.071
Identities = 29/111 (26%), Positives = 41/111 (36%)
Frame = +3
Query: 18 AAGDLKKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQTAGSAKETIGGL 197
AAG++ A A D +HA G + +G A + N SA + G
Sbjct: 320 AAGNVAGDAANAAGDVAHAAGNAAGDVANAAGNVAGNASNAA-----GDVASAAGNVAGS 374
Query: 198 IGNESLNQQGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGD 350
+ N + N G N G A G + + V G A N+AGD
Sbjct: 375 VANAAGNVAGDAANAAGDVANAAGNVAGDVANAAGNVAGDVANAAGNVAGD 425
>gb|AAF39664.1| (AE002353) conserved hypothetical protein [Chlamydia muridarum]
Length = 436
Score = 39.1 bits (89), Expect = 0.054
Identities = 35/122 (28%), Positives = 54/122 (43%), Gaps = 16/122 (13%)
Frame = +3
Query: 63 ASHATAKLPGATISGSGAAAKDDPNRTEGSWNQTAGSAKETIGGLIGN------------ 206
A+ T GA + S AA K N T+ + + +A + GGL GN
Sbjct: 262 ATAGTKAASGAASAASSAATKLTQNMTDTASKTLSQTASKATGGLFGNALNTPNWSEKIS 321
Query: 207 ESLN----QQGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKEAHYD 374
LN Q GR GR + ++ + G+ V G GG + ++++ A
Sbjct: 322 RGLNVVKTQGGRAAQFAGRALSSAMSISQMVHGLTAGVDGITGGIIGAQVANEQRAAGMA 381
Query: 375 ELHAEGKSRQHGVGAQRA 428
E AE + V +Q A
Sbjct: 382 EARAEELKSLNSVQSQYA 399
>pir||T23754 hypothetical protein T05C12.10 - Caenorhabditis elegans
emb|CAA90265.1| (Z49968) similar to drosophila hedgehog protein~cDNA EST EMBL:M89431
comes from this gene~cDNA EST EMBL:M89067 comes from this
gene~cDNA EST EMBL:C11824 comes from this gene~cDNA EST
yk424b7.3 comes from this gene~cDNA EST yk424b7.5 comes
from this gen>
emb|CAA91313.1| (Z66500) similar to drosophila hedgehog protein~cDNA EST EMBL:M89431
comes from this gene~cDNA EST EMBL:M89067 comes from this
gene~cDNA EST EMBL:C11824 comes from this gene~cDNA EST
yk424b7.3 comes from this gene~cDNA EST yk424b7.5 comes
from this gen>
Length = 1207
Score = 36.4 bits (82), Expect = 0.36
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 15/142 (10%)
Frame = +3
Query: 3 TRSDQAAGDLKKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQTAGSAKE 182
T S G+ K + D K GA +GSG + D N++ GS AG+ K
Sbjct: 630 TGSGDGKGEGNKSGTPGKSDG-----KEDGAGSNGSGNGKEGDGNKSGGSGKGGAGNGKS 684
Query: 183 TIGGLIGNESLNQ---QGREQNLEGRNQ----------QAKGQLTDLGSGIGDRVQGTAG 323
G G + N G+++N +G KG G G G+ +G+
Sbjct: 685 GDGSGDGKNNGNGGTGDGKDKNGKGSGSGDNDKSGTRAAGKGNAEGNGKGNGNDGKGSGS 744
Query: 324 GAVFNLAGDKEKEAHYDELHAEGKS--RQHGVGAQRA 428
G G +K A+GK + G G + A
Sbjct: 745 GDGSGAGGKGDKSDSESGNEADGKDGKKNEGAGGEAA 781
>gb|AAB66420.1| (U97553) unknown [murid herpesvirus 4]
Length = 774
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 198 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 251
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 252 PAWGAGPPRRD 262
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 98 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 151
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 152 PAWGAGPPRRD 162
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 398 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 451
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 452 PAWGAGPPRRD 462
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 498 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 551
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 552 PAWGAGPPRRD 562
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 598 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 651
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 652 PAWGAGPPRRD 662
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 298 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 351
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 352 PAWGAGPPRRD 362
Score = 33.2 bits (74), Expect = 3.1
Identities = 23/59 (38%), Positives = 28/59 (46%), Gaps = 5/59 (8%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 698 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 751
Query: 401 PAWG 412
PAWG
Sbjct: 752 PAWG 755
>gb|AAB66422.1| (U97553) unknown [murid herpesvirus 4]
Length = 727
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 170 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 223
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 224 PAWGAGPPRRD 234
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 270 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 323
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 324 PAWGAGPPRRD 334
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 370 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 423
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 424 PAWGAGPPRRD 434
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 470 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 523
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 524 PAWGAGPPRRD 534
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 570 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 623
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 624 PAWGAGPPRRD 634
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 70 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 123
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 124 PAWGAGPPRRD 134
>emb|CAB87943.1| (AL163912) glycine-rich protein atGRP-6 [Arabidopsis thaliana]
Length = 244
Score = 36.0 bits (81), Expect = 0.47
Identities = 30/112 (26%), Positives = 43/112 (37%)
Frame = +3
Query: 42 KAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQTAGSAKETIGGLIGNESLNQ 221
KA+ + A+ PG +SG+G + D P G ++ G++ GG G S
Sbjct: 105 KADQPGASGGASGDKPGE-MSGAGGPSGDKPGGASGGGDKPGGASGGGPGGASGGASGGA 163
Query: 222 QGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKEAHYDE 377
G G G G G G GGA +GDK + A D+
Sbjct: 164 SGGASGGASGGASGGGPGGASGGGPGGASGGGPGGASGGASGDKPEGAPGDK 215
>gb|AAB66421.1| (U97553) unknown [murid herpesvirus 4]
Length = 706
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 170 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 223
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 224 PAWGAGPPRRD 234
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 270 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 323
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 324 PAWGAGPPRRD 334
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 370 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 423
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 424 PAWGAGPPRRD 434
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 470 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 523
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 524 PAWGAGPPRRD 534
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 570 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 623
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 624 PAWGAGPPRRD 634
Score = 36.0 bits (81), Expect = 0.47
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 236 EPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGSLRRA-----PCRGQEP 400
EP G P + A RP +R RP + P G GG+ R+ P RG P
Sbjct: 70 EPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARGAGP 123
Query: 401 PAWGGGTTCRN 433
PAWG G R+
Sbjct: 124 PAWGAGPPRRD 134
>emb|CAA12026.1| (AJ224518) LEA protein [Cicer arietinum]
Length = 177
Score = 35.2 bits (79), Expect = 0.81
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Frame = +3
Query: 3 TRSDQAAGDLKKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQTAGSAKE 182
+++ QAA + +Q A+A + + TA+ + AAKD +T+ + T A++
Sbjct: 51 SQTAQAAKEKTQQTAQAAKEKTQQTAQAAKDETQQTAQAAKD---KTQQTTEATKEKAQD 107
Query: 183 TIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGA------VFNLA 344
T G S Q ++ + + G L G++V+G A GA F +A
Sbjct: 108 TTGRAREKGSEMGQSTKETAQSGKDNSAGFLQQ----TGEKVKGMAQGATDAVKQTFGMA 163
Query: 345 GDKEKEAHY 371
D + + H+
Sbjct: 164 NDDKDKDHF 172
>pir||A35419 neutrophil protein - pig (fragment)
gb|AAA63449.1| (M55701) neutrophil protein [Sus scrofa]
Length = 284
Score = 35.2 bits (79), Expect = 0.81
Identities = 23/138 (16%), Positives = 63/138 (44%), Gaps = 2/138 (1%)
Frame = +3
Query: 15 QAAGDLKKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQTAGSAKETIGG 194
+A K ++ + +S +++ ++ S S + + + + S +Q A +A+++
Sbjct: 132 RARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSDQVAAAARDSSSS 191
Query: 195 LIGNESLNQQ--GREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKEAH 368
+ + GR N + +++++ + SG+ + + GG+ + G K+K +
Sbjct: 192 TTSSSESRSRSRGRAHNRDRKHRRSVDRKRRDASGLERSHKSSKGGSSRDTKGSKDKNSR 251
Query: 369 YDELHAEGKSRQHGVGAQRA 428
D + +S + G + R+
Sbjct: 252 SDRKRSISESSRSGKRSSRS 271
>emb|CAB61195.1| (AL132973) hypothetical protein SCF91.38c. [Streptomyces coelicolor
A3(2)]
Length = 57
Score = 34.0 bits (76), Expect = 1.8
Identities = 16/49 (32%), Positives = 25/49 (50%)
Frame = +3
Query: 138 RTEGSWNQTAGSAKETIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDL 284
++ Q G AKE G +GNE + +GR +G +QAK + D+
Sbjct: 6 KSRAKMEQAKGKAKEAAGRAVGNERMTAEGRAAQSKGDARQAKEKGKDV 54
>pir||G70917 hypothetical glycine-rich protein Rv1452c - Mycobacterium
tuberculosis (strain H37RV)
emb|CAB09269.1| (Z95844) PE_PGRS [Mycobacterium tuberculosis]
Length = 741
Score = 34.0 bits (76), Expect = 1.8
Identities = 27/85 (31%), Positives = 34/85 (39%)
Frame = +3
Query: 96 TISGSGAAAKDDPNRTEGSWNQTAGSAKETIGGLIGNESLNQQGREQNLEGRNQQAKGQL 275
T G+G A + N T N G GGL+GN G G N G +
Sbjct: 462 TSGGNGGAGGNGANATTAGTNGANGGPGGH-GGLVGNGGAGGNGAN-GAAGTNASDSGAV 519
Query: 276 TDLGSGIGDRVQGTAGGAVFNLAGD 350
G+ G+ QG AGG LAG+
Sbjct: 520 GGKGNSGGNGGQGGAGGDGGTLAGN 544
>emb|CAA12027.1| (AJ224519) LEA PROTEIN [Cicer arietinum]
Length = 155
Score = 34.0 bits (76), Expect = 1.8
Identities = 30/119 (25%), Positives = 49/119 (40%), Gaps = 4/119 (3%)
Frame = +3
Query: 15 QAAGDLKKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQ----TAGSAKE 182
QAA + +Q A+ D + TA+ + AAKD +T + + T G AKE
Sbjct: 33 QAAKEKAQQAAQTAKDKTSQTAQAAKEKTQQTAQAAKDKTQQTTQATKEKAQDTTGRAKE 92
Query: 183 TIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKE 362
+ + Q + N G QQ + + G D V+ T F + D + +
Sbjct: 93 KGSEMGQSTKETAQSGKDNSAGFLQQTGEKAKGMAQGATDAVKQT-----FGMTNDDQDK 147
Query: 363 AHY 371
H+
Sbjct: 148 DHF 150
>gb|AAF13619.1|AF188935_17 (AF188935) pXO2-14 [Bacillus anthracis]
Length = 952
Score = 33.6 bits (75), Expect = 2.4
Identities = 36/137 (26%), Positives = 62/137 (44%), Gaps = 6/137 (4%)
Frame = +3
Query: 9 SDQAAGDLKKQKAEAEHDASHATAKLPGA---TISGSGAAAKDDPNRTEGSWNQTAGSAK 179
S Q D K+ +E D++H +A+ G T G G AK T + + A
Sbjct: 468 SGQTREDTPKR---SEMDSNHESAESQGEQKNTAKGGGMQAKKFARNTGAAMSYAANRG- 523
Query: 180 ETIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEK 359
+GG++ N++ N+ + + G + K +++ + G+ D V+GT A K+K
Sbjct: 524 --VGGMM-NDAGNKVA--ETVGGAVDKGKEKVSGVAKGVSDSVKGTVSEFKGGQAEGKQK 578
Query: 360 ---EAHYDELHAEGKSRQHGVGA 419
A L+ GK Q+ A
Sbjct: 579 AQENADRQTLNTIGKGIQNNANA 601
>pir||T03516 probable outer membrane secretion protein - Rhodobacter capsulatus
gb|AAC16169.1| (AF010496) potential outer membrane secretion protein [Rhodobacter
capsulatus]
Length = 1028
Score = 33.6 bits (75), Expect = 2.4
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 75 TAKLPGATISGSGAAAKDDPNRTEGSWNQTAGSAKETIGGLIGNESLNQQGREQNLEGRN 254
TA +SG A + D + + TA + + + G +GNE L G L+G
Sbjct: 780 TAGAGNDNVSGGAGADRIDLGAGDDIFTDTADAGADAVLGGLGNEVLTSLGGLDTLDGGA 839
Query: 255 QQAKGQLTDLGS----GIG-DRVQGTAG 323
+ +D GS G+G D +QG AG
Sbjct: 840 GNDRLTASDAGSRLAGGLGNDTLQGGAG 867
>emb|CAB70821.1| (AL137579) hypothetical protein [Homo sapiens]
Length = 862
Score = 33.2 bits (74), Expect = 3.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 417 PPPHAGGSCPRHGARRSEPPSP 352
PP H G S P+H ARR PP P
Sbjct: 721 PPDHLGYSAPQHPARRPTPPEP 742
>ref|NP_032917.1| pinin
emb|CAA69960.1| (Y08701) Pinin [Mus musculus]
Length = 725
Score = 33.2 bits (74), Expect = 3.1
Identities = 26/132 (19%), Positives = 65/132 (48%), Gaps = 4/132 (3%)
Frame = +3
Query: 33 KKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQ-TAGSAKETIGGLIGNE 209
K K+ + +S +++ ++ SGS +++ +R+ S + T+GS+ +
Sbjct: 577 KTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSS 636
Query: 210 SLNQ---QGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKEAHYDEL 380
S ++ +GR N + +++++ + SG+ + + GG+ + G K+K + D
Sbjct: 637 SESRSRSRGRGHNRDRKHRRSMDRKRRDTSGLERSHKSSKGGSSRDRKGSKDKSSRPDRK 696
Query: 381 HAEGKSRQHGVGAQRA 428
+ +S + G + R+
Sbjct: 697 RSISESSRSGKRSSRS 712
>pir||T00705 N-chimerin homolog F25965_3 - human
gb|AAB81198.1| (AC002398) F25965_3 [Homo sapiens]
Length = 903
Score = 33.2 bits (74), Expect = 3.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 417 PPPHAGGSCPRHGARRSEPPSP 352
PP H G S P+H ARR PP P
Sbjct: 762 PPDHLGYSAPQHPARRPTPPEP 783
>emb|CAB66197.1| (AL136502) putative integral membrane protein. [Streptomyces
coelicolor A3(2)]
Length = 350
Score = 33.2 bits (74), Expect = 3.1
Identities = 25/72 (34%), Positives = 29/72 (39%)
Frame = +2
Query: 188 WRPHWQRVLESARP*AEPRGT*PTGQGSAHRPWIRYRRPCSGYCWRRRLQPRWRQGEGGS 367
WR +R E+AR A P G A P P G R R P G GGS
Sbjct: 176 WREEERRRAETARRAARPGGA-LGAPAPASAPAAPGAAPAYGGAARPRSAPAMGLGVGGS 234
Query: 368 LRRAPCRGQEPP 403
+R+ R Q PP
Sbjct: 235 MRQEVYRDQRPP 246
>emb|CAA70874.1| (Y09703) MEMA [Homo sapiens]
Length = 586
Score = 32.8 bits (73), Expect = 4.1
Identities = 26/132 (19%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Frame = +3
Query: 33 KKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQ-TAGSAKETIGGLIGNE 209
K K+ + +S +++ ++ SGS +++ +R+ S + T+GS+
Sbjct: 436 KTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSTS 495
Query: 210 SLNQ-----QGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKEAHYD 374
S ++ +GR N + +++++ + SG+ + + GG + G K+K + D
Sbjct: 496 SSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGGSRDTKGSKDKNSRSD 555
Query: 375 ELHAEGKSRQHGVGAQRA 428
+ +S + G + R+
Sbjct: 556 RKRSISESSRSGKRSSRS 573
>emb|CAA71377.1| (Y10351) nuclear protein SDK3 [Homo sapiens]
Length = 711
Score = 32.8 bits (73), Expect = 4.1
Identities = 26/132 (19%), Positives = 65/132 (48%), Gaps = 4/132 (3%)
Frame = +3
Query: 33 KKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQ-TAGSAKETIGGLIGNE 209
K K+ + +S +++ ++ SGS +++ +R+ S + T+GS+ +
Sbjct: 563 KTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSGRDSSSSTSSS 622
Query: 210 SLNQ---QGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKEAHYDEL 380
S ++ +GR N + +++++ + SG+ + + GG+ + G K+K + D
Sbjct: 623 SESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRK 682
Query: 381 HAEGKSRQHGVGAQRA 428
+ +S + G + R+
Sbjct: 683 RSISESSRSGKRSSRS 698
>gb|AAF17209.1|AF112222_1 (AF112222) nuclear protein SDK3 [Homo sapiens]
Length = 717
Score = 32.8 bits (73), Expect = 4.1
Identities = 26/132 (19%), Positives = 65/132 (48%), Gaps = 4/132 (3%)
Frame = +3
Query: 33 KKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQ-TAGSAKETIGGLIGNE 209
K K+ + +S +++ ++ SGS +++ +R+ S + T+GS+ +
Sbjct: 569 KTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSGRDSSSSTSSS 628
Query: 210 SLNQ---QGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKEAHYDEL 380
S ++ +GR N + +++++ + SG+ + + GG+ + G K+K + D
Sbjct: 629 SESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRK 688
Query: 381 HAEGKSRQHGVGAQRA 428
+ +S + G + R+
Sbjct: 689 RSISESSRSGKRSSRS 704
>gb|AAA18802.1| (L02374) S-antigen [Plasmodium falciparum]
Length = 217
Score = 32.5 bits (72), Expect = 5.4
Identities = 28/108 (25%), Positives = 51/108 (46%), Gaps = 8/108 (7%)
Frame = +3
Query: 3 TRSDQAAGDLKKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGS-WNQTAGSA- 176
+ S+++ D + + E + D + +A G GS D + G +QT GS+
Sbjct: 71 SNSEESNNDEENKLIEGQGDQTEGSAGGKGDQTEGSSGGKGDQTEGSSGGKGDQTEGSSG 130
Query: 177 -----KETIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSG-IGDRVQGTAGG 326
E G G+++ G + + + KG T+ SG GD+ +G++GG
Sbjct: 131 GKGDQTEGSSGGKGDQTEGSSGGKGDQTEGSSGGKGDQTEGSSGGKGDQTEGSSGG 186
Score = 31.7 bits (70), Expect = 9.2
Identities = 30/101 (29%), Positives = 47/101 (45%), Gaps = 8/101 (7%)
Frame = +3
Query: 102 SGSGAAAKDDPNRT-EGSWNQTAGSA------KETIGGLIGNESLNQQGREQNLEGRNQQ 260
S S + D+ N+ EG +QT GSA E G G+++ G + + +
Sbjct: 71 SNSEESNNDEENKLIEGQGDQTEGSAGGKGDQTEGSSGGKGDQTEGSSGGKGDQTEGSSG 130
Query: 261 AKGQLTDLGSG-IGDRVQGTAGGAVFNLAGDKEKEAHYDELHAEGKSRQ 404
KG T+ SG GD+ +G++GG G + E + GK Q
Sbjct: 131 GKGDQTEGSSGGKGDQTEGSSGGKGDQTEGSSGGKGDQTEGSSGGKGDQ 179
>gb|AAD43469.1|AF113610_1 (AF113610) UspA1 [Moraxella catarrhalis]
Length = 912
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +3
Query: 147 GSWNQTAGSAKETIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGG 326
GS+N+ G K TIGG G+ + + + G +A G+ + +G G ++ +GT
Sbjct: 109 GSYNEANGE-KSTIGG--GDNNTAKGNHSTVVGGYKNEATGKYSTVGGGNSNKAEGTDS- 164
Query: 327 AVFNLAGDKEKEAHYDELHAEG 392
+AG K +A + A G
Sbjct: 165 ---TIAGGKNNQAKGEGSFAAG 183
>gb|AAD43467.1|AF113608_1 (AF113608) UspA1 [Moraxella catarrhalis]
Length = 941
Score = 32.5 bits (72), Expect = 5.4
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 18/77 (23%)
Frame = +3
Query: 135 NRTEGSWNQTAGS-------AKETIGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSG 293
N EG+++ G T+GG NE++ + G N QAKG + +G G
Sbjct: 93 NTAEGNYSTVGGGFTNEAIGKNSTVGGGFTNEAMGEYSTVAG--GANNQAKGNYSTVGGG 150
Query: 294 IGDRVQGT-----------AGGAVFNLAGDKEKEA 365
G++ G A G +AG K +A
Sbjct: 151 NGNKAIGNNSTVVGGSNNQAKGEHSTIAGGKNNQA 185
>gb|AAB48303.1| (U77716) pinin [Canis familiaris]
Length = 773
Score = 32.5 bits (72), Expect = 5.4
Identities = 25/142 (17%), Positives = 64/142 (44%), Gaps = 3/142 (2%)
Frame = +3
Query: 3 TRSDQAAGDLKKQKAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQTAGSAKE 182
+RS A + + +S +++ ++ GS ++ + S + T+GS++
Sbjct: 616 SRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGGSSSSGSSSSRSSSSSSSSTSGSSRR 675
Query: 183 TIGGLIGNESLNQ---QGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDK 353
+ S ++ +GR N + +++++ + SG+ + + GG+ + G K
Sbjct: 676 DSSSSTTSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSK 735
Query: 354 EKEAHYDELHAEGKSRQHGVGAQRA 428
+K + D + +S + G + R+
Sbjct: 736 DKNSRSDRKRSISESSRSGKRSSRS 760
>ref|NP_002678.1| pinin, desmosome associated protein
gb|AAB48304.1| (U77718) pinin [Homo sapiens]
Length = 743
Score = 32.1 bits (71), Expect = 7.0
Identities = 25/129 (19%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Frame = +3
Query: 42 KAEAEHDASHATAKLPGATISGSGAAAKDDPNRTEGSWNQ-TAGSAKETIGGLIGNESLN 218
K+ + +S +++ ++ SGS +++ +R+ S + T+GS+ + S +
Sbjct: 598 KSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSES 657
Query: 219 Q---QGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFNLAGDKEKEAHYDELHAE 389
+ +GR N + +++++ + SG+ + + GG+ + G K+K + D +
Sbjct: 658 RSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSI 717
Query: 390 GKSRQHGVGAQRA 428
+S + G + R+
Sbjct: 718 SESSRSGKRSSRS 730
>dbj|BAA74876.1| (AB020660) KIAA0853 protein [Homo sapiens]
Length = 967
Score = 32.1 bits (71), Expect = 7.0
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 186 IGGLIGNESLNQQGREQNLEGRNQQAKGQLTDLGSGIGDRVQGTAGGAVFN-LAGDKEK- 359
+G + G E N+ R ++LEG ++ LGSG G+ + + + LAGD EK
Sbjct: 720 LGSVQGFEDTNKSERTESLEGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKR 779
Query: 360 EAHYDE 377
E DE
Sbjct: 780 EDQQDE 785
>pir||A28444 filaggrin precursor - mouse (fragment)
Length = 313
Score = 32.1 bits (71), Expect = 7.0
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +3
Query: 135 NRTEGSWNQTAGSAKETIGGLIGNESLNQQGREQNLEGRNQQ-AKGQLTDLGSGIGDRVQ 311
NR GS + +G + GGL + S+ R+ + + ++GQ S DR Q
Sbjct: 44 NRRAGS-SSGSGVQGASAGGLAADASVRSGARQGHASAHGRAGSQGQAQGRVSSSADR-Q 101
Query: 312 GTAGGAVFNLAGDKEKEAHYDELHAEGKSRQHGVG 416
G G + + A D E + + E HA+ +RQ G G
Sbjct: 102 GRRGVSE-SRASDSEGHSDFSEGHAQELTRQSGAG 135
>pir||T30898 receptor-like histidine kinase - Rhodococcus erythropolis plasmid
pTA421
dbj|BAA34261.1| (AB014348) receptor-like histidine kinase [Rhodococcus
erythropolis]
Length = 1576
Score = 31.7 bits (70), Expect = 9.2
Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
Frame = +3
Query: 102 SGSGAAAKDDPNRTEGSWNQTAGSAKETIG-GLIGNESLNQQGREQNLEGRNQQAKGQLT 278
+ S A + DP+R G T G + + G GL+ ES+ Q ++ R Q A G LT
Sbjct: 160 TSSIGADRGDPSRNNG----TGGFSADLFGAGLVLLESVAQANHTASVLRRTQPAGGDLT 215
Query: 279 DLGSGIG 299
DL G
Sbjct: 216 DLSRQFG 222
>pir||T28655 receptor-like histidine kinase BpdS - Rhodococcus sp
gb|AAB52543.1| (U85412) receptor-like histidine kinase BpdS [Rhodococcus sp. M5]
Length = 1576
Score = 31.7 bits (70), Expect = 9.2
Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
Frame = +3
Query: 102 SGSGAAAKDDPNRTEGSWNQTAGSAKETIG-GLIGNESLNQQGREQNLEGRNQQAKGQLT 278
+ S A + DP+R G T G + + G GL+ ES+ Q ++ R Q A G LT
Sbjct: 160 TSSIGADRGDPSRNNG----TGGFSADLFGAGLVLLESVAQANHTASVLRRTQPAGGDLT 215
Query: 279 DLGSGIG 299
DL G
Sbjct: 216 DLSRQFG 222
>sp|P31568|YCF2_OENPI HYPOTHETICAL PROTEIN (ORF 2280)
pir||S29795 hypothetical protein 2280 - evening primrose (Oenothera picensis
subsp. picensis) chloroplast (fragment)
emb|CAA45898.1| (X64616) ORF2280 [Oenothera odorata]
Length = 721
Score = 31.7 bits (70), Expect = 9.2
Identities = 21/102 (20%), Positives = 43/102 (41%)
Frame = +3
Query: 99 ISGSGAAAKDDPNRTEGSWNQTAGSAKETIGGLIGNESLNQQGREQNLEGRNQQAKGQLT 278
+ G+ + EG+ + G+ +E + G E +G E+ +EG ++ +G
Sbjct: 259 VEGTEEEVEGTEEEVEGTEEEVEGTEEE----VEGTEDEEVEGTEEEVEGTEEEVEGTED 314
Query: 279 DLGSGIGDRVQGTAGGAVFNLAGDKEKEAHYDELHAEGKSRQ 404
+ G + V+GT + G +++E E EG +
Sbjct: 315 EEVEGTEEEVEGTEE----EVEGTEDEEVEGTEEEVEGTEEE 352
>dbj|BAA25609.1| (D88015) Unknown [Rhodococcus erythropolis]
Length = 488
Score = 31.7 bits (70), Expect = 9.2
Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
Frame = +3
Query: 102 SGSGAAAKDDPNRTEGSWNQTAGSAKETIG-GLIGNESLNQQGREQNLEGRNQQAKGQLT 278
+ S A + DP+R G T G + + G GL+ ES+ Q ++ R Q A G LT
Sbjct: 160 TSSIGADRGDPSRNNG----TGGFSADLFGAGLVLLESVAQANHTASVLRRTQPAGGDLT 215
Query: 279 DLGSGIG 299
DL G
Sbjct: 216 DLSRQFG 222
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155004953
Number of Sequences: 509459
Number of extensions: 2993480
Number of successful extensions: 10999
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 10924
Number of HSP's gapped (non-prelim): 88
length of query: 269
length of database: 159,777,284
effective HSP length: 54
effective length of query: 215
effective length of database: 132,266,498
effective search space: 28437297070
effective search space used: 28437297070
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)