Score E
Sequences producing significant alignments: (bits) Value
pir||H72706 hypothetical protein APE1071 - Aeropyrum pernix... 36 0.47
gb|AAD53121.1|AF176688_1 (AF176688) sodium/calcium/potassiu... 36 0.62
pir||S71907 hypothetical protein - Chlamydomonas reinhardti... 35 1.1
emb|CAB91315.1| (AL355928) conserved hypothetical protein [... 34 1.8
pir||T21283 hypothetical protein F23A7.5 - Caenorhabditis e... 33 4.1
dbj|BAA95892.1| (AP002071) EST D47996(S13901)SS3901_1A corr... 33 4.1
ref|NP_057709.1| hypothetical protein >gi|7582294|gb|AAF642... 33 4.1
gb|AAC31618.1| (U62541) immunoreactive 14 kDa protein BA14k... 33 4.1
sp|O05543|YOR3_GLUSU HYPOTHETICAL PROTEIN IN ADHS 5'REGION ... 32 5.4
gb|AAB66421.1| (U97553) unknown [murid herpesvirus 4] 32 5.4
gb|AAB66420.1| (U97553) unknown [murid herpesvirus 4] 32 5.4
pir||T35793 probable ATP/GTP binding protein - Streptomyces... 32 5.4
gb|AAB66422.1| (U97553) unknown [murid herpesvirus 4] 32 5.4
pir||T29421 hypothetical protein SC3A7.03c - Streptomyces c... 32 7.0
emb|CAA12165.1| (AJ224868) GNAS1 [Homo sapiens] 32 9.2
emb|CAB83215.1| (AJ251760) XLalphas protein [Homo sapiens] 32 9.2
>pir||H72706 hypothetical protein APE1071 - Aeropyrum pernix (strain K1)
dbj|BAA80056.1| (AP000060) 117aa long hypothetical protein [Aeropyrum pernix]
Length = 117
Score = 36.0 bits (81), Expect = 0.47
Identities = 19/47 (40%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Frame = -1
Query: 230 GAQPQPASGHRARRHAGGSC-PRHGARRSEPPSPCRQRGWRWRLQQYP 90
GA+P+P S +R G C P G+RR P CR + W WR + P
Sbjct: 13 GARPEPPSHYRTPGRRGPRCHPSRGSRRQ--PLWCRTQAWPWRGRSPP 58
>gb|AAD53121.1|AF176688_1 (AF176688) sodium/calcium/potassium exchanger NCKX1 [Rattus
norvegicus]
Length = 1181
Score = 35.6 bits (80), Expect = 0.62
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Frame = +2
Query: 5 EGEQNLEGRNQEAKGQLSDLGSGIGDRVQGTVGGAISNLAGDKEKEA----HYDELRAEG 172
EGE EG+ E +G+ G + V+ +N G+ E E H E AEG
Sbjct: 816 EGETEAEGKEVEQEGETEAEGKEVEHEVETEAERKETNHEGETEAEGKEADHEGETEAEG 875
Query: 173 KTRQRGV*HDVQKQAEAEHRG*SMLRWYHQHHARTSLRDHET*YPELTLVDL*DPSGAAL 352
+G + + + + EH G + +H ++ + +T ++ D G A
Sbjct: 876 NVEHQG---ETEAEGKVEHEGETEAGEKDEHEGQSETQADDT--------EVKDGEGEAE 924
Query: 353 PNAQ 364
NA+
Sbjct: 925 ANAE 928
Score = 32.1 bits (71), Expect = 7.0
Identities = 24/73 (32%), Positives = 33/73 (44%), Gaps = 2/73 (2%)
Frame = +2
Query: 2 HEGEQNLEGRNQEAKGQLSDLGSGIGDRVQGTVGGAISNLAGDKEKEAHYDELRAEGKTR 181
HEGE EG+ E +G+ G D +G E EA E+ EG+T
Sbjct: 789 HEGETEAEGKEVEHEGETE--AEGTEDEQEG-------------ETEAEGKEVEQEGETE 833
Query: 182 QRG--V*HDVQKQAE 220
G V H+V+ +AE
Sbjct: 834 AEGKEVEHEVETEAE 848
>pir||S71907 hypothetical protein - Chlamydomonas reinhardtii
gb|AAC60573.1| (S72951) orf 3' of fructosediphosphate aldolase [Chlamydomonas
reinhardtii, Peptide Chloroplast, 89 aa]
Length = 89
Score = 34.8 bits (78), Expect = 1.1
Identities = 23/72 (31%), Positives = 32/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 127 RQGEGGSLRRAPCRGQDPPAWRLARCPEAG*G*APWLKYAALVPSTSR*DQPERP*NMI- 303
RQG GGS+ R+ C G AWR A AP + + L + ++P P ++
Sbjct: 5 RQGAGGSVPRSGCGGPGAKAWRRRVAEVARCSPAPAMAESGLYRGRAETNEPGHPAVLVG 64
Query: 304 PRVDLGRSVRSLW 342
PR V LW
Sbjct: 65 PRSSFALIVAGLW 77
>emb|CAB91315.1| (AL355928) conserved hypothetical protein [Neurospora crassa]
Length = 1647
Score = 34.0 bits (76), Expect = 1.8
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 77 GDRVQGTVGGAISNLAGDKEKEAHYDELRAEGKTRQRGV*HDVQKQAEAE 226
G+R + +V A+ LA ++EA RAEG++ Q G+ D+++ AE
Sbjct: 438 GERKKESVAEAVVGLAEQADREAQEALARAEGQSAQAGITQDLEQMMSAE 487
>pir||T21283 hypothetical protein F23A7.5 - Caenorhabditis elegans
emb|CAB02976.1| (Z81067) predicted using Genefinder~cDNA EST yk488h9.3 comes from
this gene [Caenorhabditis elegans]
Length = 1307
Score = 32.8 bits (73), Expect = 4.1
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -1
Query: 344 PQRDLTDRPRSTLGIMFHGLSGWS*RDVDGTNAA---YFNHGAQPQPASGHRARRHAGGS 174
P D TDRPRS G G S S ++ +A + HG+ H+ + + GG+
Sbjct: 23 PPFDPTDRPRSRNGSPVVGSSFSSRKEPSTPGSAPVPHTRHGSSTPGHGNHQLQNNYGGA 82
Query: 173 CPRHGARRSEPPSPCRQ 123
R R PP R+
Sbjct: 83 SSRGAQSRGSPPRDPRR 99
>dbj|BAA95892.1| (AP002071) EST D47996(S13901)SS3901_1A corresponds to a region of
the predicted gene.~Similar to Zea mays transposon MuDR
mudrA and mudrB genes; mudrA. (M76978) [Oryza sativa]
Length = 509
Score = 32.8 bits (73), Expect = 4.1
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = -1
Query: 221 PQPASGHRARRHAGGSCPRHGARRSEPPSPCRQRGWRWRLQQYPEHGRR 75
P AS H R G P H R E RQR W W L P RR
Sbjct: 95 PSSASRHGYRLRTGEGAPEHQIRPREGRIHARQR-WNWTLSPVPRSCRR 142
>ref|NP_057709.1| hypothetical protein
gb|AAF64267.1|AF208853_1 (AF208853) BM-011 [Homo sapiens]
Length = 173
Score = 32.8 bits (73), Expect = 4.1
Identities = 17/43 (39%), Positives = 23/43 (52%)
Frame = -1
Query: 224 QPQPASGHRARRHAGGSCPRHGARRSEPPSPCRQRGWRWRLQQ 96
QP+ S R RRH S +G+RR S R RG +R+Q+
Sbjct: 56 QPRSHSYDRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQR 98
>gb|AAC31618.1| (U62541) immunoreactive 14 kDa protein BA14k [Brucella abortus]
Length = 147
Score = 32.8 bits (73), Expect = 4.1
Identities = 25/77 (32%), Positives = 32/77 (41%)
Frame = -1
Query: 239 FNHGAQPQPASGHRARRHAGGSCPRHGARRSEPPSPCRQRGWRWRLQQYPEHGRRYLIQG 60
+N G +P GHR RH RHG RR GW + L + G +I G
Sbjct: 52 YNRGHRPGYWHGHRGYRHY-----RHGYRR-------HNDGWWYPLAAF---GAGAIIGG 96
Query: 59 R*ADPWPLGYVPRGSAH 9
+ P P+ P GS H
Sbjct: 97 AISQPRPVYRAPAGSPH 113
>sp|O05543|YOR3_GLUSU HYPOTHETICAL PROTEIN IN ADHS 5'REGION (ORF3)
dbj|BAA19755.1| (D86440) unnamed protein product [Gluconobacter suboxydans]
Length = 444
Score = 32.5 bits (72), Expect = 5.4
Identities = 34/73 (46%), Positives = 39/73 (52%), Gaps = 25/73 (34%)
Frame = -1
Query: 221 PQPASGHRAR---RHAGGSCPRHGARRSEPPSPCRQR------GWRWRLQQYPE------ 87
P+P R R RH G SCPR AR +P +P Q G R + PE
Sbjct: 4 PRPCRRPRPRGPGRHRGASCPR--ARSCDPHAPAAQSGRHVPPGSRSHPRHVPEAARAAR 61
Query: 86 -HGRRYLIQGR*ADPWP-------LG--YVPRGSAHPR 3
+G GR ADP P LG Y P G PR
Sbjct: 62 RNGEHGFHPGRPADPAPSVPPEGRLGFQYRPAGRCSPR 99
>gb|AAB66421.1| (U97553) unknown [murid herpesvirus 4]
Length = 706
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 167 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 220
Query: 172 QDPPAW 189
PPAW
Sbjct: 221 AGPPAW 226
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 267 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 320
Query: 172 QDPPAW 189
PPAW
Sbjct: 321 AGPPAW 326
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 367 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 420
Query: 172 QDPPAW 189
PPAW
Sbjct: 421 AGPPAW 426
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 467 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 520
Query: 172 QDPPAW 189
PPAW
Sbjct: 521 AGPPAW 526
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 567 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 620
Query: 172 QDPPAW 189
PPAW
Sbjct: 621 AGPPAW 626
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 67 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 120
Query: 172 QDPPAW 189
PPAW
Sbjct: 121 AGPPAW 126
>gb|AAB66420.1| (U97553) unknown [murid herpesvirus 4]
Length = 774
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 195 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 248
Query: 172 QDPPAW 189
PPAW
Sbjct: 249 AGPPAW 254
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 295 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 348
Query: 172 QDPPAW 189
PPAW
Sbjct: 349 AGPPAW 354
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 395 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 448
Query: 172 QDPPAW 189
PPAW
Sbjct: 449 AGPPAW 454
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 495 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 548
Query: 172 QDPPAW 189
PPAW
Sbjct: 549 AGPPAW 554
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 595 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 648
Query: 172 QDPPAW 189
PPAW
Sbjct: 649 AGPPAW 654
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 695 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 748
Query: 172 QDPPAW 189
PPAW
Sbjct: 749 AGPPAW 754
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 95 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 148
Query: 172 QDPPAW 189
PPAW
Sbjct: 149 AGPPAW 154
>pir||T35793 probable ATP/GTP binding protein - Streptomyces coelicolor
(fragment)
emb|CAA20212.1| (AL031225) putative ATP /GTP binding protein [Streptomyces
coelicolor A3(2)]
Length = 604
Score = 32.5 bits (72), Expect = 5.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 91 GYCWRRHLQPRWRQGEGGSLRRAPCRGQDPPAWRLARCPEA 213
G WRR+ P WR+ G++ AP +DP AW R A
Sbjct: 126 GEIWRRYGPPAWRRAVPGAV-PAPAPEEDPAAWPALRAAGA 165
>gb|AAB66422.1| (U97553) unknown [murid herpesvirus 4]
Length = 727
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 167 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 220
Query: 172 QDPPAW 189
PPAW
Sbjct: 221 AGPPAW 226
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 267 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 320
Query: 172 QDPPAW 189
PPAW
Sbjct: 321 AGPPAW 326
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 367 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 420
Query: 172 QDPPAW 189
PPAW
Sbjct: 421 AGPPAW 426
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 467 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 520
Query: 172 QDPPAW 189
PPAW
Sbjct: 521 AGPPAW 526
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 567 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 620
Query: 172 QDPPAW 189
PPAW
Sbjct: 621 AGPPAW 626
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 7 G*AEPRGT*PRGQGSAQRPWIRYRRPCSGYCWRRHLQPRWRQGEGGSLRRA-----PCRG 171
G EP G P + A RP +R RP + P G GG+ R+ P RG
Sbjct: 67 GWGEPGGRGPGARERAARPGVRVPRP------GEPVPPGGMGGTGGTGPRSEGAGCPARG 120
Query: 172 QDPPAW 189
PPAW
Sbjct: 121 AGPPAW 126
>pir||T29421 hypothetical protein SC3A7.03c - Streptomyces coelicolor
emb|CAA20066.1| (AL031155) very hypothetical protein SC3A7.03c [Streptomyces
coelicolor A3(2)]
Length = 304
Score = 32.1 bits (71), Expect = 7.0
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 34 PRGQGSAQRPWIRYRRPC-SGYCWRRHLQPRWRQGEGGSLRRAPCRGQDPPAWRLARCPE 210
P G + W+R R PC S CW +P+ RQ G +P G A RCP
Sbjct: 62 PSGARRSASRWVRRRPPCQSPPCWAWTHRPQGRQPSG-----SPSDGLPRTAHTSRRCPP 116
Query: 211 A 213
A
Sbjct: 117 A 117
>emb|CAA12165.1| (AJ224868) GNAS1 [Homo sapiens]
Length = 441
Score = 31.7 bits (70), Expect = 9.2
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = -1
Query: 254 TNAAYFNHGAQPQPASGHRARRHAGGSCPRHGARRSEPPSPCRQRGWRWRLQQYPEHGRR 75
T AA A PASG R + H P A P P R WR + + GRR
Sbjct: 204 TRAAQVRRAASAAPASGARRKIHLRPPSPEIQAADPPTPRPTRASAWRGKSES--SRGRR 261
>emb|CAB83215.1| (AJ251760) XLalphas protein [Homo sapiens]
Length = 388
Score = 31.7 bits (70), Expect = 9.2
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = -1
Query: 254 TNAAYFNHGAQPQPASGHRARRHAGGSCPRHGARRSEPPSPCRQRGWRWRLQQYPEHGRR 75
T AA A PASG R + H P A P P R WR + + GRR
Sbjct: 204 TRAAQVRRAASAAPASGARRKIHLRPPSPEIQAADPPTPRPTRASAWRGKSES--SRGRR 261
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197997475
Number of Sequences: 509459
Number of extensions: 3892838
Number of successful extensions: 11413
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 11383
Number of HSP's gapped (non-prelim): 40
length of query: 271
length of database: 159,777,284
effective HSP length: 55
effective length of query: 216
effective length of database: 131,757,039
effective search space: 28459520424
effective search space used: 28459520424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)