Score E
Sequences producing significant alignments: (bits) Value
gb|AAB61278.1| (AF001033) putative 20kDa subunit of the V-A... 252 3e-66
gb|AAD50985.1|AF170544_1 (AF170544) vacuolar-ATPase [Pyricu... 238 4e-62
gb|AAF67173.1| (AF239659) HEX1 [Aspergillus nidulans] 211 6e-54
sp|Q07460|IF51_CHICK INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4... 58 1e-07
gb|AAF13315.1|AF109730_1 (AF109730) translation initiation ... 57 3e-07
sp|P10160|IF5A_RABIT INITIATION FACTOR 5A (EIF-5A) (EIF-4D)... 57 3e-07
ref|NP_001961.1| eukaryotic translation initiation factor 5... 55 1e-06
ref|NP_010880.1| Translation initiation factor eIF-5A; Hyp2... 53 3e-06
ref|NP_012581.1| anaerobically expressed form of translatio... 52 6e-06
gb|AAF67762.1| (AC018364) putative eukaryotic initiation fa... 51 1e-05
sp|O94083|IF5A_CANAL INITIATION FACTOR 5A (EIF-5A) (EIF-4D)... 51 2e-05
gb|AAF47151.1| (AE003462) CG3186 gene product [Drosophila m... 51 2e-05
pir||T40248 initiation factor eif-5a - fission yeast (Schiz... 50 3e-05
sp|P56289|IF5A_SCHPO INITIATION FACTOR EIF-5A >gi|7492107|p... 49 6e-05
sp|P13651|IF5A_DICDI INITIATION FACTOR 5A (EIF-5A) (EIF-4D)... 48 8e-05
gb|AAF27938.1|AF225297_1 (AF225297) translation initiation ... 48 1e-04
sp|P24922|IF52_NICPL INITIATION FACTOR 5A-2 (EIF-5A) (EIF-4... 48 1e-04
sp|P26564|IF5A_MEDSA INITIATION FACTOR 5A (EIF-5A) (EIF-4D)... 47 2e-04
sp|P56336|IF54_SOLTU INITIATION FACTOR 5A-4 (EIF-5A) (EIF-4... 47 2e-04
sp|Q20751|IF52_CAEEL PROBABLE INITIATION FACTOR 5A (EIF-5A)... 47 2e-04
sp|P34563|IF51_CAEEL PROBABLE INITIATION FACTOR 5A (EIF-5A)... 47 2e-04
pir||S41010 translation initiation factor eIF-5A - Caenorha... 47 2e-04
sp|P56335|IF53_SOLTU INITIATION FACTOR 5A-3 (EIF-5A) (EIF-4... 46 4e-04
gb|AAD39281.1|AC007576_4 (AC007576) initiation factor 5A-4 ... 46 4e-04
sp|P24921|IF51_NICPL INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4... 45 7e-04
sp|P56332|IF5A_MAIZE INITIATION FACTOR 5A (EIF-5A) (EIF-4D)... 45 0.001
sp|P56333|IF51_SOLTU INITIATION FACTOR 5A (EIF-5A) (EIF-4D)... 45 0.001
gb|AAC67555.1| (AF094773) translation initiation factor 5A ... 44 0.002
pir||S21058 translation initiation factor eIF-5A.1 - curled... 44 0.002
sp|P56337|IF55_SOLTU INITIATION FACTOR 5A-5 (EIF-5A) (EIF-4... 43 0.003
sp|Q09121|IF52_CHICK INITIATION FACTOR 5A-2 (EIF-5A) (EIF-4D) 42 0.008
emb|CAB65463.1| (AJ238624) translation initiation factor 5A... 39 0.042
pir||C64453 translation initiation factor eIF-5a homolog - ... 37 0.28
pdb|1EIF| Eukaryotic Translation Initiation Factor 5a Fr... 37 0.28
sp|Q58625|IF5A_METJA INITIATION FACTOR 5A (IF-5A) (HYPUSINE... 37 0.28
pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Facto... 37 0.28
gb|AAB21928.1| eukaryotic translation initiation factor 5A ... 36 0.36
sp|P38672|IF5A_NEUCR INITIATION FACTOR 5A (EIF-5A) (EIF-4D)... 34 1.4
pir||T15510 hypothetical protein C15C7.2 - Caenorhabditis e... 34 1.8
gb|AAF31047.1|AC005802_5 (AC005802) L6202.3 [Leishmania major] 34 2.4
gb|AAF31041.1|AC005893_12 (AC005893) L6202.3 [Leishmania ma... 34 2.4
sp|P28461|IF5A_SULAC INITIATION FACTOR 5A (IF-5A) (HYPUSINE... 32 5.4
pir||B42156 translation initiation factor eIF-5A II - chick... 32 5.4
pir||I48839 tenascin-X - mouse (fragment) >gi|488761|emb|CA... 32 7.1
pir||T40289 hypothetical protein SPBC354.09c - fission yeas... 32 9.2
>gb|AAB61278.1| (AF001033) putative 20kDa subunit of the V-ATPase [Neurospora
crassa]
Length = 176
Score = 252 bits (637), Expect = 3e-66
Identities = 129/185 (69%), Positives = 147/185 (78%)
Frame = +2
Query: 92 MGYYDDEGSFRNGGIHKLGDKSREIEIDIRETSGPASSPNTVSIPCHHIRLGDFLMLQGR 271
MGYYDD+ G + +G S+ TV+IPCHHIRLGD L+LQGR
Sbjct: 1 MGYYDDDAH---------GHVEADAAPRATTGTGTGSASQTVTIPCHHIRLGDILILQGR 51
Query: 272 PCQVIRISTSSATGQYRYLGVDLFTKQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDM 451
PCQVIRISTS+ATGQ+RYLGVDLFTKQLHEESSF+SNPAPSVVVQ+MLGPVFKQYRVLDM
Sbjct: 52 PCQVIRISTSAATGQHRYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFKQYRVLDM 111
Query: 452 QEGQIVAMTETGDVKQGLPVIDQSNLYSRLHYAFESGRGSVRVLVLNDGGRELAGDMNVM 631
Q+G IVAMTETGDVKQ LPVIDQS+L++RL AFESGRGSVRVLV++D GRE+A DM V+
Sbjct: 112 QDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAVDMKVV 171
Query: 632 AGCSL 646
G L
Sbjct: 172 HGSRL 176
>gb|AAD50985.1|AF170544_1 (AF170544) vacuolar-ATPase [Pyricularia grisea]
Length = 181
Score = 238 bits (602), Expect = 4e-62
Identities = 126/185 (68%), Positives = 143/185 (77%), Gaps = 5/185 (2%)
Frame = +2
Query: 92 MGYYDDEGSFRNGGIHKLGDKSREIEIDIRETSGPAS-----SPNTVSIPCHHIRLGDFL 256
MGYY+D+ + + E + + GP S +PNTVSIPCHHIRLGD L
Sbjct: 1 MGYYEDD---------RETIEISESRVSRGSSRGPRSRGGDYAPNTVSIPCHHIRLGDIL 51
Query: 257 MLQGRPCQVIRISTSSATGQYRYLGVDLFTKQLHEESSFISNPAPSVVVQSMLGPVFKQY 436
+LQGRPCQVIRISTS+ATGQ+RYLGVDLFTK+L EESS IS P+PSVVVQ+M GPVFKQY
Sbjct: 52 LLQGRPCQVIRISTSAATGQHRYLGVDLFTKELREESSSISTPSPSVVVQTMCGPVFKQY 111
Query: 437 RVLDMQEGQIVAMTETGDVKQGLPVIDQSNLYSRLHYAFESGRGSVRVLVLNDGGRELAG 616
RVLDMQ G IVAMTETGDVKQ LPV +QSNLY RL AFESGRGSVR LV++D GREL
Sbjct: 112 RVLDMQAGHIVAMTETGDVKQNLPVSEQSNLYERLQRAFESGRGSVRALVVSDNGRELVC 171
Query: 617 DMNVMAGCSL 646
DM V+ G L
Sbjct: 172 DMAVLHGSRL 181
>gb|AAF67173.1| (AF239659) HEX1 [Aspergillus nidulans]
Length = 221
Score = 211 bits (532), Expect = 6e-54
Identities = 117/180 (65%), Positives = 140/180 (77%), Gaps = 37/180 (20%)
Frame = +2
Query: 92 MGYYDDEG---SFRNG--------------GIHKLGDKSREIEIDIRETSGP-------- 196
MGYYDD+G SFR G H D RE E+ + + GP
Sbjct: 1 MGYYDDDGNYHSFRRGVERAVDRITHPFHHHHHDHHDHHRE-EVIVTDERGPVRYRDGVK 59
Query: 197 ------------ASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRYLGVDL 340
A++ TV IP H IR+GD L+LQGRPCQVIRIS+S T Q RY GVDL
Sbjct: 60 ENVRIVEPRGAAATTSETVPIPTHFIRVGDILVLQGRPCQVIRISSSPMTDQRRYTGVDL 119
Query: 341 FTKQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGLPVIDQ 520
FT++LHEESSF+SNP PSVVVQ+MLGPV+K YR+LD+QEG IVA+TE+GDVK G+PVI Q
Sbjct: 120 FTRELHEESSFVSNPKPSVVVQTMLGPVYKTYRILDIQEGTIVALTESGDVKSGIPVIPQ 179
Query: 521 SNLYSRLHYAFESGRGSVRVLVLNDGGRELAGDMNVM 631
NLY R+ AF GRGSVR LV+NDGGREL D ++
Sbjct: 180 GNLYQRIKDAFLEGRGSVRALVINDGGRELVVDYKII 216
>sp|Q07460|IF51_CHICK INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D)
pir||A42156 translation initiation factor eIF-5A I - chicken
gb|AAA17444.1| (M99499) initiation factor 5A [Gallus gallus]
Length = 153
Score = 57.8 bits (137), Expect = 1e-07
Identities = 37/143 (25%), Positives = 79/143 (54%), Gaps = 5/143 (3%)
Frame = +2
Query: 185 TSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVDLFTK 349
T+G A + +T + C +R F++L+GRPC+++ +STS TG++ + +G+D+F
Sbjct: 8 TTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSK-TGKHGHAKVHLVGIDIFNG 66
Query: 350 QLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGLPVIDQSNL 529
+ +E+ PS + Y+++ +Q+G + +TE+G+V++ L + + +L
Sbjct: 67 KKYEDI------CPSTHNMDVPNIKRNDYQLIGIQDGYLSLLTESGEVREDLK-LPEGDL 119
Query: 530 YSRLHYAFESGRGSVRVLVLNDGGRELA 613
+ F + V++ V++ E A
Sbjct: 120 GKEIEGKFNANE-DVQISVISAMNEECA 146
>gb|AAF13315.1|AF109730_1 (AF109730) translation initiation factor 5A [Spodoptera exigua]
gb|AAF13316.1|AF109731_1 (AF109731) translation initiation factor 5A [Spodoptera frugiperda]
Length = 160
Score = 56.6 bits (134), Expect = 3e-07
Identities = 42/145 (28%), Positives = 81/145 (54%), Gaps = 9/145 (6%)
Frame = +2
Query: 173 DIRET---SGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----L 328
DI +T +G + + T + C +R F+ML+GRPC+++ +STS TG++ + +
Sbjct: 3 DIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSK-TGKHGHAKVHLV 61
Query: 329 GVDLFTKQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDM-QEGQIVAMTETGDVKQGL 505
G+D+F + +E+ PS + + Y++ D+ +G + M + GD+++ L
Sbjct: 62 GIDIFNGKKYEDI------CPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 115
Query: 506 PVIDQSNLYSRLHYAFESGRGSVRVLVLNDGGRE 607
+ D +L ++L F+SG+ + VL G E
Sbjct: 116 KIPD-GDLGTQLRSDFDSGK-ELLCTVLKSCGEE 147
>sp|P10160|IF5A_RABIT INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
pir||A31486 translation initiation factor eIF-5A - rabbit
Length = 154
Score = 56.6 bits (134), Expect = 3e-07
Identities = 38/154 (24%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Frame = +2
Query: 173 DIRETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVD 337
D+ +G A + T + C +R F++L+GRPC+++ +STS TG++ + +G+D
Sbjct: 4 DLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSK-TGKHGHAKVHLVGID 62
Query: 338 LFTKQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGLPVID 517
+FT + +E+ PS + ++++ +Q+G + + ++G+V++ L +
Sbjct: 63 IFTGKKYEDI------CPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLR-LP 115
Query: 518 QSNLYSRLHYAFESGRGSVRVLVLNDGGRELAGDMNVMA 634
+ +L + ++SG + + VL+ E A + MA
Sbjct: 116 EGDLGKEIEQKYDSGE-EILITVLSAMTEEAAVAIKAMA 153
>ref|NP_001961.1| eukaryotic translation initiation factor 5A
sp|P10159|IF5A_HUMAN INITIATION FACTOR 5A (EIF-5A) (EIF-4D) (REV BINDING FACTOR)
pir||FIHUA translation initiation factor eIF-5A - human
gb|AAA58453.1| (M23419) initiation factor 4D [Homo sapiens]
gb|AAB29229.1| REV binding factor, eukaryotic initiation factor 5A, eIF-5A [human,
HeLa cells, Peptide Partial, 154 aa]
gb|AAA86989.1| (U17969) eIF-5A [Homo sapiens]
Length = 154
Score = 54.7 bits (129), Expect = 1e-06
Identities = 37/154 (24%), Positives = 82/154 (53%), Gaps = 5/154 (3%)
Frame = +2
Query: 173 DIRETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVD 337
D+ +G A + T + C +R F++L+GRPC+++ +STS TG++ + +G+D
Sbjct: 4 DLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSK-TGKHGHAKVHLVGID 62
Query: 338 LFTKQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGLPVID 517
+FT + +E+ PS + ++++ +Q+G + + ++G+V++ L +
Sbjct: 63 IFTGKKYEDI------CPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLR-LP 115
Query: 518 QSNLYSRLHYAFESGRGSVRVLVLNDGGRELAGDMNVMA 634
+ +L + ++ G + + VL+ E A + MA
Sbjct: 116 EGDLGKEIEQKYDCGE-EILITVLSAMTEEAAVAIKAMA 153
>ref|NP_010880.1| Translation initiation factor eIF-5A; Hyp2p
sp|P23301|IF52_YEAST INITIATION FACTOR 5A-2 (EIF-5A) (EIF-4D) (HYPUSINE CONTAINING
PROTEIN HP2)
pir||FIBYA1 translation initiation factor eIF-5A.1 - yeast (Saccharomyces
cerevisiae)
emb|CAA39693.1| (X56236) hypusine containing protein HP2 [Saccharomyces
cerevisiae]
gb|AAA35155.1| (M63541) initiation factor 5A [Saccharomyces cerevisiae]
gb|AAB65008.1| (U18779) Hyp2p: translation initiation factor eIF-5A [Saccharomyces
cerevisiae]
dbj|BAA11826.1| (D83166) eukaryotic translation initiation factor 5A precursor
[Saccharomyces cerevisiae]
Length = 157
Score = 53.1 bits (125), Expect = 3e-06
Identities = 40/139 (28%), Positives = 74/139 (52%), Gaps = 6/139 (4%)
Frame = +2
Query: 197 ASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVDLFT-KQLH 358
A S T + C +R F++++ RPC+++ +STS TG++ + + +D+FT K+L
Sbjct: 13 AGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSK-TGKHGHAKVHLVAIDIFTGKKLE 71
Query: 359 EESSFISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGLPVIDQSNLYSR 538
+ S N VV ++ +Y++LD+ +G + M GD K + + L
Sbjct: 72 DLSPSTHNMEVPVVKRN-------EYQLLDIDDGFLSLMNMDGDTKDDVKA-PEGELGDS 123
Query: 539 LHYAFESGRGSVRVLVLNDGGRELA 613
L AF+ G+ + V +++ G E A
Sbjct: 124 LQTAFDEGK-DLMVTIISAMGEEAA 147
>ref|NP_012581.1| anaerobically expressed form of translation initiation factor
eIF-5A; Anb1p
sp|P19211|IF51_YEAST INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D) (HYPUSINE CONTAINING
PROTEIN HP1)
pir||FIBYA2 translation initiation factor eIF-5A.2 - yeast (Saccharomyces
cerevisiae)
emb|CAA39692.1| (X56235) hypusine containing protein HP1 [Saccharomyces
cerevisiae]
gb|AAA34425.1| (J05455) protein synthesis initiation factor (eIF-4D)
[Saccharomyces cerevisiae]
gb|AAA35156.1| (M63542) initiation factor 5A [Saccharomyces cerevisiae]
emb|CAA89575.1| (Z49547) ORF YJR047c [Saccharomyces cerevisiae]
gb|AAA88750.1| (L36344) ORF; putative [Saccharomyces cerevisiae]
Length = 157
Score = 52.3 bits (123), Expect = 6e-06
Identities = 40/139 (28%), Positives = 74/139 (52%), Gaps = 6/139 (4%)
Frame = +2
Query: 197 ASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRYLGV-----DLFT-KQLH 358
A + T + C +R F++++GRPC+++ +STS TG++ + V D+FT K+L
Sbjct: 13 AGASATYPMQCSALRKNGFVVIKGRPCKIVDMSTSK-TGKHGHAKVHLVTLDIFTGKKLE 71
Query: 359 EESSFISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGLPVIDQSNLYSR 538
+ S N V +S +Y++LD+ +G + MT G+ K + + L
Sbjct: 72 DLSPSTHNLEVPFVKRS-------EYQLLDIDDGYLSLMTMDGETKDDVKA-PEGELGDS 123
Query: 539 LHYAFESGRGSVRVLVLNDGGRELA 613
+ AF+ G+ + V +++ G E A
Sbjct: 124 MQAAFDEGK-DLMVTIISAMGEEAA 147
>gb|AAF67762.1| (AC018364) putative eukaryotic initiation factor 5A (eIF-5A)
[Arabidopsis thaliana]
Length = 158
Score = 51.2 bits (120), Expect = 1e-05
Identities = 40/140 (28%), Positives = 72/140 (50%), Gaps = 6/140 (4%)
Frame = +2
Query: 188 SGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFTKQ 352
S A + T +IR G ++++GRPC+V+ +STS TG++ ++ +D+FT +
Sbjct: 10 SSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFTSK 68
Query: 353 LHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQSNL 529
E+ S+ V + Y+++D+ E G + +T+ G K L + L
Sbjct: 69 KLEDIVPSSHNCDVPHVNRV------DYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEAL 122
Query: 530 YSRLHYAFESGRGSVRVLVLNDGGRE 607
++L FE G+ V V V++ G E
Sbjct: 123 LTQLKNGFEEGKDIV-VSVMSAMGEE 147
>sp|O94083|IF5A_CANAL INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
gb|AAD10697.1| (U07366) eIF-5A [Candida albicans]
Length = 157
Score = 50.8 bits (119), Expect = 2e-05
Identities = 40/149 (26%), Positives = 78/149 (51%), Gaps = 5/149 (3%)
Frame = +2
Query: 167 EIDIRETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LG 331
E D ET+ A + T + C +R ++++ RPC+++ +STS TG++ + +
Sbjct: 3 EEDTFETAD-AGAALTFPMQCSALRKNGHVVIKNRPCKIVDMSTSK-TGKHGHAKVHLVA 60
Query: 332 VDLFTKQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGLPV 511
+D+FT + E+ S PS + +++++LD+ +G + MT GD K + V
Sbjct: 61 IDIFTGKKLEDLS------PSTHNMEVPNVSRQEFQLLDIDDGYLSLMTADGDTKDDVKV 114
Query: 512 IDQSNLYSRLHYAFESGRGSVRVLVLNDGGRELA 613
+ L +L F+ G+ + V +++ G E A
Sbjct: 115 -PEGELGDKLQSEFDEGKDLI-VTIISAMGEEAA 146
>gb|AAF47151.1| (AE003462) CG3186 gene product [Drosophila melanogaster]
Length = 159
Score = 50.8 bits (119), Expect = 2e-05
Identities = 35/133 (26%), Positives = 73/133 (54%), Gaps = 7/133 (5%)
Frame = +2
Query: 167 EIDIRETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LG 331
E+D + + + + T + C +R F+ML+ RPC+++ +STS TG++ + +G
Sbjct: 3 ELDDQFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSK-TGKHGHAKVHMVG 61
Query: 332 VDLFTKQLHEE--SSFISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGL 505
+D+F+ + +E+ S + P+V + + + + + MTE+GD+++ L
Sbjct: 62 IDIFSNKKYEDICPSTHNMDVPNVKREDL-------QLIAISDDSFLTLMTESGDLREDL 114
Query: 506 PVIDQSNLYSRLHYAFESGR 565
V + L +L F+SG+
Sbjct: 115 KV-PEGELGEQLRLDFDSGK 133
>pir||T40248 initiation factor eif-5a - fission yeast (Schizosaccharomyces
pombe)
emb|CAB58162.1| (AL121815) initiation factor eif-5a [Schizosaccharomyces pombe]
Length = 157
Score = 50.0 bits (117), Expect = 3e-05
Identities = 38/141 (26%), Positives = 78/141 (54%), Gaps = 7/141 (4%)
Frame = +2
Query: 191 GPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVDLFTKQL 355
G A + T + C +R ++++GRPC+++ +STS TG++ + + +D+F +
Sbjct: 12 GEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSK-TGKHGHAKVHIVALDIFNGRK 70
Query: 356 HEESSFISNPAPSVVVQSMLGPVFK--QYRVLDMQEGQIVAMTETGDVKQGLPVIDQSNL 529
+E+ S PS +M PV K +Y+++++ +G + MT G K + + + L
Sbjct: 71 YEDMS------PS--THNMDVPVVKRDEYQLVNIDDGYLNLMTTDGTTKDDVR-LPEGEL 121
Query: 530 YSRLHYAFESGRGSVRVLVLNDGGRELA 613
+ + FE G+ + + V++ G E+A
Sbjct: 122 GNEIEEGFEEGKDLI-ITVVSAMGEEIA 148
>sp|P56289|IF5A_SCHPO INITIATION FACTOR EIF-5A
pir||T38429 initiation factor eif-5a - fission yeast (Schizosaccharomyces
pombe)
emb|CAB16195.1| (Z99126) initiation factor eif-5a. [Schizosaccharomyces pombe]
Length = 157
Score = 48.8 bits (114), Expect = 6e-05
Identities = 38/141 (26%), Positives = 77/141 (53%), Gaps = 7/141 (4%)
Frame = +2
Query: 191 GPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVDLFTKQL 355
G A + T + C +R ++++GRPC+++ +STS TG++ + + +D+F +
Sbjct: 12 GEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSK-TGKHGHAKVHIVALDIFNGRK 70
Query: 356 HEESSFISNPAPSVVVQSMLGPVFK--QYRVLDMQEGQIVAMTETGDVKQGLPVIDQSNL 529
+E+ S PS +M PV K +Y+++++ +G + MT G K + + + L
Sbjct: 71 YEDMS------PS--THNMDVPVVKRDEYQLVNIDDGYLNLMTTDGTTKDDVR-LPEGEL 121
Query: 530 YSRLHYAFESGRGSVRVLVLNDGGRELA 613
+ + F+ GR + + V++ G E A
Sbjct: 122 GNEIEEGFDEGRDLI-ITVVSAMGEETA 148
>sp|P13651|IF5A_DICDI INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
pir||FIDOA translation initiation factor eIF-5A - slime mold (Dictyostelium
discoideum)
emb|CAA33095.1| (X14970) eIF-4D (AA 1-169) [Dictyostelium discoideum]
prf||1506341A initiation factor eIF4D [Dictyostelium discoideum]
Length = 169
Score = 48.4 bits (113), Expect = 8e-05
Identities = 32/112 (28%), Positives = 62/112 (54%), Gaps = 6/112 (5%)
Frame = +2
Query: 170 IDIRETSGPASSPN-TVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LG 331
+D+ + + S + T I C +R F++++G PC+++ +STS TG++ +
Sbjct: 17 LDVEDYAQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSK-TGKHGHAKVNITA 75
Query: 332 VDLFTKQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGL 505
+D+FT + +EE PS + K+Y V+D+Q+G + + G+VK+ L
Sbjct: 76 IDIFTGKKYEEI------CPSTHNIDVPNVSRKEYTVMDVQDGYLSLLDAGGEVKEDL 127
>gb|AAF27938.1|AF225297_1 (AF225297) translation initiation factor 5A [Euphorbia esula]
Length = 156
Score = 47.6 bits (111), Expect = 1e-04
Identities = 38/142 (26%), Positives = 71/142 (49%), Gaps = 6/142 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR +++++ RPC+V+ +STS TG++ ++G+D+F
Sbjct: 6 ESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSK-TGKHGHAKCHFVGIDIFN 64
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ PS + Y+++D+ E G + +TE G+ K L +
Sbjct: 65 GKKLEDI------VPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 118
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRE 607
+L S++ F G+ V V V++ G E
Sbjct: 119 SLLSQIKDGFGDGKDLV-VTVMSSMGEE 145
>sp|P24922|IF52_NICPL INITIATION FACTOR 5A-2 (EIF-5A) (EIF-4D)
pir||S21059 translation initiation factor eIF-5A.2 - curled-leaved tobacco
emb|CAA45104.1| (X63542) eukaryotic initiation factor 5A (2) [Nicotiana
plumbaginifolia]
Length = 159
Score = 47.6 bits (111), Expect = 1e-04
Identities = 39/142 (27%), Positives = 71/142 (49%), Gaps = 6/142 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR ++++GRPC+V+ +STS TG++ ++ +D+FT
Sbjct: 9 ESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFT 67
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ S+ V Y+++D+ E G + +TE G+ K L +
Sbjct: 68 GKKLEDIVPSSHNCDVPHVNR------TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDD 121
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRE 607
NL +++ F G+ V V V++ G E
Sbjct: 122 NLLTQIKDGFAEGKDLV-VSVMSAMGEE 148
>sp|P26564|IF5A_MEDSA INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
pir||FIAAA translation initiation factor eIF-5A - alfalfa
emb|CAA42065.1| (X59441) eukaryotic translation initiation factor 4D [Medicago
sativa]
Length = 161
Score = 47.3 bits (110), Expect = 2e-04
Identities = 38/142 (26%), Positives = 72/142 (49%), Gaps = 6/142 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR +++++ RPC+V+ +STS TG++ ++ +D+FT
Sbjct: 9 ESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFT 67
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ EE S+ V + Y+++D+ E G + +TE G+ K L +
Sbjct: 68 SKKLEEVYVPSSHNCDVPHVNR-----TDYQLIDISEDGFVSLLTENGNTKDDLKLPTDD 122
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRE 607
+L +++ F G+ V V V++ G E
Sbjct: 123 SLLTQIKDGFAEGKDLV-VSVMSAMGEE 149
>sp|P56336|IF54_SOLTU INITIATION FACTOR 5A-4 (EIF-5A) (EIF-4D)
dbj|BAA20878.1| (AB004825) eukaryotic initiation factor 5A4 [Solanum tuberosum]
Length = 159
Score = 47.3 bits (110), Expect = 2e-04
Identities = 38/142 (26%), Positives = 72/142 (49%), Gaps = 6/142 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR +++++GRPC+V+ +STS TG++ ++ +D+FT
Sbjct: 9 ESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFT 67
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ S+ V Y+++D+ E G + +T+ G+ K L +
Sbjct: 68 GKKLEDIVPSSHNCDVPHVNR------TDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDD 121
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRE 607
+L S++ F G+ V V V++ G E
Sbjct: 122 SLLSQIKDGFAEGKDLV-VSVMSAMGEE 148
>sp|Q20751|IF52_CAEEL PROBABLE INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
pir||T22628 hypothetical protein F54C9.1 - Caenorhabditis elegans
emb|CAA90247.1| (Z49967) similar to initiation factor 5A~cDNA EST EMBL:D75952 comes
from this gene~cDNA EST EMBL:D74070 comes from this
gene~cDNA EST EMBL:D74623 comes from this gene~cDNA EST
EMBL:D74571 comes from this gene~cDNA EST EMBL:D76331
comes from this gene~c>
Length = 161
Score = 46.9 bits (109), Expect = 2e-04
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Frame = +2
Query: 188 SGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVDLFTKQ 352
+G + + T C +R + +M++GRPC+++ +STS TG++ + + +D+FT
Sbjct: 13 TGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSK-TGKHGHAKVHMVAIDIFT-- 69
Query: 353 LHEESSFISNPAPSVVVQSMLGPVFK--QYRVLDMQEGQIVAM-TETGDVKQGLPVIDQS 523
S + + PS +M PV K +Y ++ + +G M E+ + K L + D +
Sbjct: 70 ----SKKLEDICPS--THNMDVPVVKRREYLLMAIDDGYCSLMDPESCEQKDDLKLPD-T 122
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRE 607
L ++ A+E GSV V V++ G E
Sbjct: 123 ELGQQIRDAYEKDEGSVLVQVVSAIGEE 150
>sp|P34563|IF51_CAEEL PROBABLE INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
emb|CAA81597.1| (Z27079) similar to initiation factor 5A~cDNA EST EMBL:D74625 comes
from this gene~cDNA EST EMBL:D75463 comes from this
gene~cDNA EST EMBL:D75831 comes from this gene~cDNA EST
EMBL:D72879 comes from this gene~cDNA EST EMBL:D76399
comes from this gene~c>
Length = 161
Score = 46.9 bits (109), Expect = 2e-04
Identities = 44/153 (28%), Positives = 80/153 (51%), Gaps = 8/153 (5%)
Frame = +2
Query: 149 DKSREIEIDIRETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY- 325
D E + D E+ A+ P C +R + +M++GRPC+++ +STS TG++ +
Sbjct: 4 DHHDEEQFDSAESGAAATFPKQ----CSALRKNEHVMIRGRPCKIVEMSTSK-TGKHGHA 58
Query: 326 ----LGVDLFTKQLHEESSFISNPAPSVVVQSMLGPVFK--QYRVLDMQEGQIVAM-TET 484
+ +D+FT + E+ PS +M PV K +Y ++ +++G M E+
Sbjct: 59 KVHMVAIDIFTTKKLEDI------CPS--THNMDVPVVKRREYILMSIEDGFCSLMDPES 110
Query: 485 GDVKQGLPVIDQSNLYSRLHYAFESGRGSVRVLVLNDGGRE 607
++K L + + +L + + A E GSV V V+ G E
Sbjct: 111 CELKDDLK-MPEGDLGNTIREALEKDEGSVLVQVVAACGEE 150
>pir||S41010 translation initiation factor eIF-5A - Caenorhabditis elegans
Length = 173
Score = 46.9 bits (109), Expect = 2e-04
Identities = 44/153 (28%), Positives = 80/153 (51%), Gaps = 8/153 (5%)
Frame = +2
Query: 149 DKSREIEIDIRETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY- 325
D E + D E+ A+ P C +R + +M++GRPC+++ +STS TG++ +
Sbjct: 16 DHHDEEQFDSAESGAAATFPKQ----CSALRKNEHVMIRGRPCKIVEMSTSK-TGKHGHA 70
Query: 326 ----LGVDLFTKQLHEESSFISNPAPSVVVQSMLGPVFK--QYRVLDMQEGQIVAM-TET 484
+ +D+FT + E+ PS +M PV K +Y ++ +++G M E+
Sbjct: 71 KVHMVAIDIFTTKKLEDI------CPS--THNMDVPVVKRREYILMSIEDGFCSLMDPES 122
Query: 485 GDVKQGLPVIDQSNLYSRLHYAFESGRGSVRVLVLNDGGRE 607
++K L + + +L + + A E GSV V V+ G E
Sbjct: 123 CELKDDLK-MPEGDLGNTIREALEKDEGSVLVQVVAACGEE 162
>sp|P56335|IF53_SOLTU INITIATION FACTOR 5A-3 (EIF-5A) (EIF-4D)
pir||T07133 translation initiation factor eIF-5A3 - potato
dbj|BAA20877.1| (AB004824) eukaryotic initiation factor 5A3 [Solanum tuberosum]
Length = 160
Score = 46.1 bits (107), Expect = 4e-04
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR +++++GRPC+V+ +STS TG++ ++ +D+F
Sbjct: 9 ESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFN 67
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ S+ V Y+++D+ E G + +TE+G+ K L +
Sbjct: 68 GKKLEDIVPSSHNCDVPHVNR------TDYQLIDISEDGFVSLLTESGNTKDDLRLPTDE 121
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRE 607
+L ++ F+ G+ V V V++ G E
Sbjct: 122 SLLKQVKDGFQEGKDLV-VSVMSAMGEE 148
>gb|AAD39281.1|AC007576_4 (AC007576) initiation factor 5A-4 [Arabidopsis thaliana]
Length = 158
Score = 46.1 bits (107), Expect = 4e-04
Identities = 36/140 (25%), Positives = 69/140 (48%), Gaps = 6/140 (4%)
Frame = +2
Query: 188 SGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFTKQ 352
S A + T IR +++++ RPC+V+ +STS TG++ ++ +D+FT +
Sbjct: 10 SSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFTSK 68
Query: 353 LHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQSNL 529
E+ S+ V Y+++D+ E G + +T+ G K L + + L
Sbjct: 69 KLEDIVPSSHNCDVPHVNR------TDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTL 122
Query: 530 YSRLHYAFESGRGSVRVLVLNDGGRE 607
++ F+ G+ V V V++ G E
Sbjct: 123 LQQIKSGFDDGKDLV-VSVMSAMGEE 147
>sp|P24921|IF51_NICPL INITIATION FACTOR 5A-1 (EIF-5A) (EIF-4D)
pir||S21060 translation initiation factor eIF-5A - common tobacco
emb|CAA45105.1| (X63543) eukaryotic initiatin factor 5A (3) [Nicotiana tabacum]
Length = 159
Score = 45.3 bits (105), Expect = 7e-04
Identities = 37/149 (24%), Positives = 71/149 (46%), Gaps = 6/149 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR ++++ RPC+V+ +STS TG++ ++ +D+FT
Sbjct: 9 ESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFT 67
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ S+ V Y+++D+ E G + +TE G+ K L +
Sbjct: 68 GKKLEDIVPSSHNCDVPHVNR------TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDD 121
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRELAGDMNV 628
NL + + F G+ V ++ G ++ G +V
Sbjct: 122 NLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDV 156
>sp|P56332|IF5A_MAIZE INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
pir||T01355 translation initiation factor eIF-5A - maize
emb|CAA69225.1| (Y07920) translation initiation factor 5A [Zea mays]
gb|AAB88614.1| (AF034943) translation initiation factor 5A [Zea mays]
Length = 160
Score = 44.9 bits (104), Expect = 0.001
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T +R F++++ RPC+V+ +STS TG++ ++ +D+F
Sbjct: 10 ESKADAGASKTYPQQAGTVRKNGFIVIKNRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFN 68
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ S+ V +Y+++D+ E G + +T G+ K L +
Sbjct: 69 GKKLEDIVPSSHNCDIPHVNR------TEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDE 122
Query: 524 NLYSRLHYAFESGRGSV 574
L +++ FESG+ V
Sbjct: 123 TLVAQIKEGFESGKDLV 139
>sp|P56333|IF51_SOLTU INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
dbj|BAA20876.1| (AB004823) eukaryotic initiation factor 5A2 [Solanum tuberosum]
dbj|BAA20880.1| (AB004827) eukaryotic initiation factor 5A1 [Solanum tuberosum]
Length = 160
Score = 44.9 bits (104), Expect = 0.001
Identities = 34/131 (25%), Positives = 65/131 (48%), Gaps = 6/131 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR +++++GRPC+V+ +STS TG++ ++ +D+F
Sbjct: 9 ESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFN 67
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ S+ V Y+++D+ E G + +TE G+ K L +
Sbjct: 68 GKKLEDIVPSSHNCDVPHVNR------TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDD 121
Query: 524 NLYSRLHYAFESGRGSV 574
L +++ FE G+ V
Sbjct: 122 ALLNQVKGGFEEGKDLV 138
>gb|AAC67555.1| (AF094773) translation initiation factor 5A [Oryza sativa]
Length = 160
Score = 44.1 bits (102), Expect = 0.002
Identities = 36/142 (25%), Positives = 71/142 (49%), Gaps = 6/142 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR +++++ RPC+V+ +STS TG++ ++ +D+F
Sbjct: 10 ESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFN 68
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ S+ V +Y+++D+ E G + +TE+G+ K L +
Sbjct: 69 GKKLEDIVPSSHNCDVPHVNR------TEYQLIDISEDGFVSLLTESGNTKDDLRLPTDD 122
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRE 607
+L ++ F G+ V V V++ G E
Sbjct: 123 SLLGQIKTGFGEGKDLV-VTVMSAMGEE 149
>pir||S21058 translation initiation factor eIF-5A.1 - curled-leaved tobacco
(fragment)
emb|CAA45103.1| (X63541) eukaryotic initiation factor 5A (1) [Nicotiana
plumbaginifolia]
Length = 145
Score = 43.8 bits (101), Expect = 0.002
Identities = 34/131 (25%), Positives = 66/131 (49%), Gaps = 6/131 (4%)
Frame = +2
Query: 236 IRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFTKQLHEESSFISNPAPSVV 400
IR ++++ RPC+V+ +STS TG++ ++ +D+FT + E+ S+
Sbjct: 13 IRKNGHIVIKNRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPH 71
Query: 401 VQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQSNLYSRLHYAFESGRGSVR 577
V Y+++D+ E G + +TE G+ K L + NL + + F G+ V
Sbjct: 72 VNR------TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVL 125
Query: 578 VLVLNDGGRELAGDMNV 628
++ G ++ G +V
Sbjct: 126 SVMSAMGEEQICGIKDV 142
>sp|P56337|IF55_SOLTU INITIATION FACTOR 5A-5 (EIF-5A) (EIF-4D)
dbj|BAA20879.1| (AB004826) eukaryotic initiation factor 5A5 [Solanum tuberosum]
Length = 159
Score = 43.4 bits (100), Expect = 0.003
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR ++++ RPC+V+ +STS TG++ ++ +D+FT
Sbjct: 9 ESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSK-TGKHGHAKCHFVAIDIFT 67
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ S+ V Y+++D+ E G + +TE G+ K L +
Sbjct: 68 GKKLEDIVPSSHNCDVPHVNR------TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDD 121
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRELAG 616
L +++ F G+ V ++ G ++ G
Sbjct: 122 TLLAQVKDGFAEGKDLVLSVMSAMGEEQICG 152
>sp|Q09121|IF52_CHICK INITIATION FACTOR 5A-2 (EIF-5A) (EIF-4D)
Length = 101
Score = 41.8 bits (96), Expect = 0.008
Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Frame = +2
Query: 227 CHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVDLFTKQLHEESSFISNPAP 391
C +R F++L+GRPC+ STS TG++ + +G+D+FT + +E+ P
Sbjct: 2 CSALRKNGFVVLKGRPCKXXXXSTSK-TGKHGHAKVHLVGIDIFTGKKYEDI------CP 54
Query: 392 SVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGL 505
S + ++++ +Q+G + + ++G+V++ L
Sbjct: 55 STHNMDVPNIKRNDFQLIGIQDGFLSLLQDSGEVREDL 92
>emb|CAB65463.1| (AJ238624) translation initiation factor 5A precursor protein
(eIF-5A) [Senecio vernalis]
Length = 159
Score = 39.5 bits (90), Expect = 0.042
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Frame = +2
Query: 182 ETSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFT 346
E+ A + T IR G ++++ R C+V+ +STS TG++ ++ +D+F
Sbjct: 9 ESKADAGASKTYPQQAGTIRKGGHIVIKNRACKVVEVSTSK-TGKHGHAKCHFVAIDIFN 67
Query: 347 KQLHEESSFISNPAPSVVVQSMLGPVFKQYRVLDMQE-GQIVAMTETGDVKQGLPVIDQS 523
+ E+ S+ V Y+++D+ E G + +TE G+ K L +
Sbjct: 68 GKKLEDIVPSSHNCDVPHVNR------TDYQLIDISEDGFVSLLTENGNTKDDLKLPTDD 121
Query: 524 NLYSRLHYAFESGRGSVRVLVLNDGGRE 607
L +++ F G+ V V V++ G E
Sbjct: 122 ALLTQIKDGFGEGKDLV-VSVMSAMGEE 148
>pir||C64453 translation initiation factor eIF-5a homolog - Methanococcus
jannaschii
Length = 135
Score = 36.7 bits (83), Expect = 0.28
Identities = 25/98 (25%), Positives = 50/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 206 PNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSS----ATGQYRYLGVDLFTKQLHEESSF 373
P T + +++G ++M+ G PC+++ IS S + R +G+ +F K E F
Sbjct: 5 PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKE---F 61
Query: 374 ISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQ 499
++ + V V ++D ++GQ++A+ GD+ Q
Sbjct: 62 VAPTSSKVEVP-----------IIDRRKGQVLAI--MGDMVQ 90
>pdb|1EIF| Eukaryotic Translation Initiation Factor 5a From Methanococcus
Jannaschii
Length = 135
Score = 36.7 bits (83), Expect = 0.28
Identities = 25/98 (25%), Positives = 50/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 206 PNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSS----ATGQYRYLGVDLFTKQLHEESSF 373
P T + +++G ++M+ G PC+++ IS S + R +G+ +F K E F
Sbjct: 5 PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKE---F 61
Query: 374 ISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQ 499
++ + V V ++D ++GQ++A+ GD+ Q
Sbjct: 62 VAPTSSKVEVP-----------IIDRRKGQVLAI--MGDMVQ 90
>sp|Q58625|IF5A_METJA INITIATION FACTOR 5A (IF-5A) (HYPUSINE-CONTAINING PROTEIN)
gb|AAB99231.1| (U67563) translation initiation factor aIF-5A [Methanococcus
jannaschii]
Length = 132
Score = 36.7 bits (83), Expect = 0.28
Identities = 25/98 (25%), Positives = 50/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 206 PNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSS----ATGQYRYLGVDLFTKQLHEESSF 373
P T + +++G ++M+ G PC+++ IS S + R +G+ +F K E F
Sbjct: 2 PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKE---F 58
Query: 374 ISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQ 499
++ + V V ++D ++GQ++A+ GD+ Q
Sbjct: 59 VAPTSSKVEVP-----------IIDRRKGQVLAI--MGDMVQ 87
>pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From
Methanococcus Jannaschii
Length = 136
Score = 36.7 bits (83), Expect = 0.28
Identities = 25/98 (25%), Positives = 50/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 206 PNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSS----ATGQYRYLGVDLFTKQLHEESSF 373
P T + +++G ++M+ G PC+++ IS S + R +G+ +F K E F
Sbjct: 6 PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKE---F 62
Query: 374 ISNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQ 499
++ + V V ++D ++GQ++A+ GD+ Q
Sbjct: 63 VAPTSSKVEVP-----------IIDRRKGQVLAI--MGDMVQ 91
>gb|AAB21928.1| eukaryotic translation initiation factor 5A isoform I, eIF-5AI
[chickens, Peptide Partial, 79 aa, segment 1 of 2]
Length = 79
Score = 36.4 bits (82), Expect = 0.36
Identities = 19/60 (31%), Positives = 39/60 (64%), Gaps = 5/60 (8%)
Frame = +2
Query: 185 TSGPASSPNTVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVDLFTK 349
T+G A + +T + +R F++L+GRP +++ +STS TG + + +G+D+F
Sbjct: 2 TTGDAGASSTYPMQXSALRKNGFVVLKGRPXKIVEMSTSK-TGXHGHAKVHLVGIDIFNG 60
Query: 350 QLHEE 364
+ +E+
Sbjct: 61 KKYED 65
>sp|P38672|IF5A_NEUCR INITIATION FACTOR 5A (EIF-5A) (EIF-4D)
pir||S55278 translation initiation factor eIF-5A - Neurospora crassa
gb|AAA61707.1| (U02638) initiation factor 5a [Neurospora crassa]
Length = 163
Score = 34.4 bits (77), Expect = 1.4
Identities = 28/118 (23%), Positives = 57/118 (47%), Gaps = 5/118 (4%)
Frame = +2
Query: 212 TVSIPCHHIRLGDFLMLQGRPCQVIRISTSSATGQYRY-----LGVDLFTKQLHEESSFI 376
T + C +R G ++++ RPC+++ +STS TG++ + + +D+FT + E+
Sbjct: 24 TYPMQCSALRKGGHVVIKNRPCKIVDMSTSK-TGKHGHAKVHLVAIDIFTGKKLEDL--- 79
Query: 377 SNPAPSVVVQSMLGPVFKQYRVLDMQEGQIVAMTETGDVKQGLPVIDQSNLYSRLHYAFE 556
PS + Y+ + E +V + G+ K+ L + + L R+ E
Sbjct: 80 ---CPSTHNMDVPNVKRTDYQFSYIDEDFLVLIDSNGEEKRELK-MPEGELAKRIEKLEE 135
Query: 557 SGR 565
G+
Sbjct: 136 EGK 138
>pir||T15510 hypothetical protein C15C7.2 - Caenorhabditis elegans
gb|AAA83155.1| (U41528) coded for by C. elegans cDNA yk121h6.3; coded for by C.
elegans cDNA yk121h6.5; short region of weak similarity
to rod-like proteins like myosin heavy chain and kinesin
heavy chain [Caenorhabditis elegans]
Length = 623
Score = 34.0 bits (76), Expect = 1.8
Identities = 31/119 (26%), Positives = 58/119 (48%)
Frame = +2
Query: 74 SDNKSKMGYYDDEGSFRNGGIHKLGDKSREIEIDIRETSGPASSPNTVSIPCHHIRLGDF 253
+D SK YY+++ S ++ I +L + ++EI +RE + S S+ +
Sbjct: 503 NDPDSKNVYYENQLSKKDYDIQELRRQLMDVEIRLRENESVSMSRQLESVAHNEEMTEKV 562
Query: 254 LMLQGRPCQVIRISTSSATGQYRYLGVDLFTKQLHEESSFISNPAPSVVVQSMLGPVFK 430
+L+G ++ S+T + YL ++FT+ LH S N A ++++M G V K
Sbjct: 563 RVLEG------KLQMLSSTSEIDYLR-NIFTQFLHSMGS--PNAASKAILKAM-GSVLK 611
>gb|AAF31047.1|AC005802_5 (AC005802) L6202.3 [Leishmania major]
Length = 2354
Score = 33.6 bits (75), Expect = 2.4
Identities = 27/88 (30%), Positives = 44/88 (49%), Gaps = 10/88 (11%)
Frame = -1
Query: 694 RTAPAPPLLTTSSLRPQATAGHHVHVTGELTATVVEHEDANRATAR----------LESV 545
R++P PPL TT +LRP A + V TAT+V + + + + L S+
Sbjct: 104 RSSPVPPLHTTPALRPHAPSPQPASVVS--TATLVHPVEEDAVSTKPSVSEADLHALRSI 161
Query: 544 VETRVEVGLVNDRETLLDVASLGHGNDLTLLHVEDTVL 431
+ET + +ND + +A+ L E+T L
Sbjct: 162 IETLQQA--LNDEQHNAALAATSAAEQLRTAKEENTAL 197
>gb|AAF31041.1|AC005893_12 (AC005893) L6202.3 [Leishmania major]
Length = 2310
Score = 33.6 bits (75), Expect = 2.4
Identities = 27/88 (30%), Positives = 44/88 (49%), Gaps = 10/88 (11%)
Frame = -1
Query: 694 RTAPAPPLLTTSSLRPQATAGHHVHVTGELTATVVEHEDANRATAR----------LESV 545
R++P PPL TT +LRP A + V TAT+V + + + + L S+
Sbjct: 104 RSSPVPPLHTTPALRPHAPSPQPASVVS--TATLVHPVEEDAVSTKPSVSEADLHALRSI 161
Query: 544 VETRVEVGLVNDRETLLDVASLGHGNDLTLLHVEDTVL 431
+ET + +ND + +A+ L E+T L
Sbjct: 162 IETLQQA--LNDEQHNAALAATSAAEQLRTAKEENTAL 197
>sp|P28461|IF5A_SULAC INITIATION FACTOR 5A (IF-5A) (HYPUSINE-CONTAINING PROTEIN) (SHP)
pir||S22380 translation initiation factor aIF-5A - Sulfolobus acidocaldarius
emb|CAA44842.1| (X63132) hypusine-containing protein [Sulfolobus acidocaldarius]
Length = 135
Score = 32.5 bits (72), Expect = 5.4
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Frame = +2
Query: 236 IRLGDFLMLQGRPCQVIRISTSSATGQY-----RYLGVDLFTKQLHEESSFISNPAPSVV 400
+++G ++M+ G PC+V+ I T + TG++ + + LFT Q
Sbjct: 15 LKVGSYVMIDGEPCRVVEI-TKAKTGKHGSAKANVVAIGLFTGQ---------------- 57
Query: 401 VQSMLGPVFKQYRV--LDMQEGQIVA 472
+S++ PV +Q V ++ GQI+A
Sbjct: 58 KRSLMAPVDQQVEVPIIEKHVGQILA 83
>pir||B42156 translation initiation factor eIF-5A II - chicken (fragment)
Length = 97
Score = 32.5 bits (72), Expect = 5.4
Identities = 18/90 (20%), Positives = 45/90 (50%)
Frame = +2
Query: 236 IRLGDFLMLQGRPCQVIRISTSSATGQYRYLGVDLFTKQLHEESSFISNPAPSVVVQSML 415
+R F++L+GRP + + + +G+D+FT + +E+ PS +
Sbjct: 5 LRKNGFVVLKGRPXKSTSKTGKHGHAKVHLVGIDIFTGKKYEDI------XPSTHNMDVP 58
Query: 416 GPVFKQYRVLDMQEGQIVAMTETGDVKQGL 505
++++ +Q+G + + ++G+V++ L
Sbjct: 59 NIKRNDFQLIGIQDGFLSLLQDSGEVREDL 88
>pir||I48839 tenascin-X - mouse (fragment)
emb|CAA52147.1| (X73959) tenascin-X [Mus musculus]
Length = 860
Score = 32.1 bits (71), Expect = 7.1
Identities = 28/137 (20%), Positives = 54/137 (38%)
Frame = +2
Query: 50 EKTVESSKSDNKSKMGYYDDEGSFRNGGIHKLGDKSREIEIDIRETSGPASSPNTVSIPC 229
E T+E + K K Y G R GGI LG + E++I + + P +P
Sbjct: 121 EVTIEGLQPGRKYKFLLYGLTGGKRLGGISALGVTASEVDISAPDHTEPPHAPG------ 174
Query: 230 HHIRLGDFLMLQGRPCQVIRISTSSATGQYRYLGVDLFTKQLHEESSFISNPAPSVVVQS 409
LG + + P +R+S + A G + V + ++ + V++
Sbjct: 175 ----LGTLAVTEATP-DSLRLSWAVARGPFDSFVVQYQDTENETQALLVDGDQDKVLISG 229
Query: 410 MLGPVFKQYRVLDMQEG 460
+ ++ + ++EG
Sbjct: 230 LEPKTSYKFFLYGLREG 246
>pir||T40289 hypothetical protein SPBC354.09c - fission yeast
(Schizosaccharomyces pombe)
emb|CAA17809.1| (AL022071) hypothetical protein [Schizosaccharomyces pombe]
Length = 794
Score = 31.7 bits (70), Expect = 9.2
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -1
Query: 685 PAPPLLTTSSLRPQATAGHHVHVTGELTATVVEHEDANRATARLESVVETRVEVGLV-ND 509
PA P + +SL + A H+ +V LT HE+ NR + + +V+ + V + + ND
Sbjct: 311 PAGPYPSANSLYRGSVANHYYYVGDPLTPGWSAHEETNRISPKDANVLPSIVSIPITFND 370
Query: 508 RETLLDVASLGHGN 467
LL GHG+
Sbjct: 371 GIELLKRLQ-GHGH 383
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166746826
Number of Sequences: 509459
Number of extensions: 3288270
Number of successful extensions: 11156
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 11134
Number of HSP's gapped (non-prelim): 45
length of query: 273
length of database: 159,777,284
effective HSP length: 55
effective length of query: 217
effective length of database: 131,757,039
effective search space: 28591277463
effective search space used: 28591277463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)