The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.0.13 [May-26-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fgr_0_e17_t3_066.ab1.seq Fgr_0_E17_T3_066.ab1 0 0 0 1
828
(821 letters)
Database: nr
509,459 sequences; 159,777,284 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||E70336 hypothetical protein aq_403 - Aquifex aeolicus ... 33 3.2
ref|NP_004568.1| phosphoserine phosphatase >gi|7388253|sp|P... 33 3.2
pir||E70969 probable PPE protein - Mycobacterium tuberculos... 33 4.1
dbj|BAA33806.1| (AB018408) 3-phosphoserine phosphatase [Ara... 32 7.1
pir||A46315 E4 protein - human papillomavirus type 2 >gi|33... 32 9.3
pdb|1UIO| Adenosine Deaminase (His 238 Ala Mutant) 32 9.3
>pir||E70336 hypothetical protein aq_403 - Aquifex aeolicus
gb|AAC06683.1| (AE000688) putative protein [Aquifex aeolicus]
Length = 341
Score = 33.2 bits (74), Expect = 3.2
Identities = 37/129 (28%), Positives = 62/129 (47%), Gaps = 19/129 (14%)
Frame = +1
Query: 112 QIFSGFPLRELKGYVDELMAYNKTIPTTYYEEGKVTATEVSPPKIFQGQV-----ELYNR 276
++ GF +R+ K + D++ Y+ E+ V SPPK V EL
Sbjct: 21 KLIEGFEIRK-KNFGDKVFFYSPGFKHYEVEDFSVN----SPPKFVDISVTGRNCELMCD 75
Query: 277 LMANGIQVYVVSAAS-EELVRMGASDPKYGYN-------------VPAKNVVGVSLFLKT 414
A+ I +++ A + EELV++G K G VP + +LK
Sbjct: 76 HCASKILWHMIPATTPEELVKVGEDLKKKGIEGVLISGGSDKNGFVPLWDFFDAMKYLKE 135
Query: 415 KKGEITTARKQIEDNAYTQKVQNQNLDA 498
+ G + T + D Y +K++ N+DA
Sbjct: 136 ELGFLLTCHVGLVDEDYVEKLKEANVDA 163
>ref|NP_004568.1| phosphoserine phosphatase
sp|P78330|SERB_HUMAN L-3-PHOSPHOSERINE PHOSPHATASE (PSP) (O-PHOSPHOSERINE
PHOSPHOHYDROLASE) (PSPASE)
emb|CAA71318.1| (Y10275) L-3-phosphoserine phosphatase [Homo sapiens]
Length = 225
Score = 33.2 bits (74), Expect = 3.2
Identities = 32/121 (26%), Positives = 52/121 (42%)
Frame = +1
Query: 25 DSKKHKESLYSYYLRLCEIEDAVCYPWAAQIFSGFPLRELKGYVDELMAYNKTIPTTYYE 204
DS +E ++C +EDAV + P K + E +A I + +
Sbjct: 22 DSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPF---KAALTERLAL---IQPSREQ 75
Query: 205 EGKVTATEVSPPKIFQGQVELYNRLMANGIQVYVVSAASEELVRMGASDPKYGYNVPAKN 384
++ A + PP + G EL +RL +QV+++S +V AS N+PA N
Sbjct: 76 VQRLIAEQ--PPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASK----LNIPATN 129
Query: 385 V 387
V
Sbjct: 130 V 130
>pir||E70969 probable PPE protein - Mycobacterium tuberculosis (strain H37RV)
emb|CAA15735.1| (AL009198) PPE [Mycobacterium tuberculosis]
Length = 3716
Score = 32.8 bits (73), Expect = 4.1
Identities = 20/63 (31%), Positives = 30/63 (46%)
Frame = -3
Query: 372 NVVAVLRVGSAHSDELLRSGAHNVDLDAVGHQAVVKLNLTLEDLGWGHLSGGDLALLVVS 193
N V VL +G A+ G+HN VG + NL +LG+G++ G+L +
Sbjct: 3140 NPVTVLNIGLANV------GSHNAGFGNVGEVNLGAANLGAHNLGFGNIGAGNLGFGNIG 3193
Query: 192 GGN 184
GN
Sbjct: 3194 HGN 3196
>dbj|BAA33806.1| (AB018408) 3-phosphoserine phosphatase [Arabidopsis thaliana]
dbj|BAA33807.1| (AB018409) 3-phosphoserin phosphatase [Arabidopsis thaliana]
Length = 295
Score = 32.1 bits (71), Expect = 7.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 235 PPKIFQGQVELYNRLMANGIQVYVVSAASEELVRMGASDPKYGYNVPAKNVVGVSL 402
PP++ G EL +L AN I VY++S +++ AS +P +N+ +L
Sbjct: 153 PPRLSPGIEELVKKLRANNIDVYLISGGFRQMINPVASI----LGIPRENIFANNL 204
>pir||A46315 E4 protein - human papillomavirus type 2
gb|AAA47014.1| (M28743) ORF E4 [Human papillomavirus]
Length = 125
Score = 31.7 bits (70), Expect = 9.3
Identities = 21/67 (31%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Frame = +2
Query: 167 WPTTKPFPPLTTRRARSPPLRCPHPRSSRVKLSFTTA*WPTASRSTL*APLLRSSSE--- 337
+P ++P PP RC PR RV+ T ++S S++ P LR SE
Sbjct: 42 YPQSQPQNQQEQEEQLRPPTRCAPPRRQRVRRPSATG---SSSDSSIPGPTLRERSERGK 98
Query: 338 WALPTLSTAT 367
W++ T T
Sbjct: 99 WSVTTSEIVT 108
>pdb|1UIO| Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 31.7 bits (70), Expect = 9.3
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Frame = +1
Query: 244 IFQGQVELYNRLMANGIQ--VYVVSAASEELVRMGASDPKYGYNVPAKNVVGVSLFLKTK 417
+F G VE Y + NGI V+ S E+VR LKT+
Sbjct: 190 LFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVD------------------ILKTE 231
Query: 418 KGEITTARKQIEDNAYTQKVQNQNLDAEMTPWLWAPATWKEGKWAAINTY-IDTWKRPIL 594
+ + IED A ++ +N+ E+ PW +++ G W T+ + +K
Sbjct: 232 R--VGAGYHTIEDEALYNRLLKENMHFEVCPW----SSYLTGAWDPKTTHAVVRFKND-- 283
Query: 595 AGGDTPHSDGPMIFR 639
+ ++D P+IF+
Sbjct: 284 KANYSLNTDDPLIFK 298
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244744435
Number of Sequences: 509459
Number of extensions: 5617306
Number of successful extensions: 20087
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 20085
Number of HSP's gapped (non-prelim): 7
length of query: 273
length of database: 159,777,284
effective HSP length: 55
effective length of query: 218
effective length of database: 131,757,039
effective search space: 28723034502
effective search space used: 28723034502
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)