The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.0.13 [May-26-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fgr_0_e19_t3_070.ab1.seq Fgr_0_E19_T3_070.ab1 0 0 0 1
817
(712 letters)
Database: nr
509,459 sequences; 159,777,284 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||T25894 hypothetical protein T19B4.2 - Caenorhabditis e... 34 2.0
gb|AAC01711.1| (AF040570) polyketide synthase [Amycolatopsi... 34 2.0
pir||T17464 rifamycin polyketide synthase modules 4-6 - Amy... 34 2.0
gb|AAA89173.1| (L42379) bone-derived growth factor [Homo sa... 34 2.0
sp|P19922|HYIN_BRAJA INDOLEACETAMIDE HYDROLASE (IAH) (INDOL... 34 2.0
pir||T07090 metallothionein-II - soybean >gi|2270992|gb|AAB... 32 4.5
gb|AAD21622.1| (AF128399) succinyl-CoA synthetase beta subu... 32 5.9
sp|Q60331|ASPG_METJA PROBABLE L-ASPARAGINASE (L-ASPARAGINE ... 32 5.9
gb|AAC06364.1| (AF052247) fork head domain protein FKD4 [Da... 32 5.9
dbj|BAA09770.1| (D63483) The KIAA0149 gene product is relat... 32 7.8
ref|NP_003684.1| acetyl LDL receptor; SREC=scavenger recept... 32 7.8
>pir||T25894 hypothetical protein T19B4.2 - Caenorhabditis elegans
gb|AAB37636.1| (U80438) coded for by C. elegans cDNA CEESD54F; weak similarity to
nucleoporins [Caenorhabditis elegans]
Length = 1217
Score = 33.6 bits (75), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (58%)
Frame = -2
Query: 141 WRGSSCSCGKSTTLSSCRASCGRARPG 61
W SC C +TLS C A CG ARPG
Sbjct: 540 WECQSCFCSWDSTLSECGA-CGEARPG 565
>gb|AAC01711.1| (AF040570) polyketide synthase [Amycolatopsis mediterranei]
Length = 5060
Score = 33.6 bits (75), Expect = 2.0
Identities = 21/43 (48%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = +2
Query: 8 GGLLARGDAGWSD-GAAAVPGRARPQDARHDDRVVLLPQEQELP 136
G + A GD +D AAAV G R A H DRVVLL + E+P
Sbjct: 4573 GAVPAGGDHTLTDPAAAAVWGLVRSAQAEHPDRVVLLDTDGEVP 4616
>pir||T17464 rifamycin polyketide synthase modules 4-6 - Amycolatopsis
mediterranei
emb|CAA11036.1| (AJ223012) rifamycin polyketide synthase, type 1 [Amycolatopsis
mediterranei]
Length = 5069
Score = 33.6 bits (75), Expect = 2.0
Identities = 21/43 (48%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = +2
Query: 8 GGLLARGDAGWSD-GAAAVPGRARPQDARHDDRVVLLPQEQELP 136
G + A GD +D AAAV G R A H DRVVLL + E+P
Sbjct: 4582 GAVPAGGDHTLTDPAAAAVWGLVRSAQAEHPDRVVLLDTDGEVP 4625
>gb|AAA89173.1| (L42379) bone-derived growth factor [Homo sapiens]
Length = 793
Score = 33.6 bits (75), Expect = 2.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 156 GCRPAWRGSSCSCGKSTTLSSCRASCGRARPGT 58
G P +RG CSCG S+T CR + RP T
Sbjct: 397 GSEPHFRGFPCSCGSSSTSRLCRQLGSKCRPLT 429
>sp|P19922|HYIN_BRAJA INDOLEACETAMIDE HYDROLASE (IAH) (INDOLE-3-ACETAMIDE HYDROLASE)
pir||S05311 indoleacetamide hydrolase - Bradyrhizobium japonicum
emb|CAA33213.1| (X15117) indole-3-acetamide hydrolase (AA 1-465) [Bradyrhizobium
japonicum]
gb|AAA26220.1| (M24333) indole-3-acetamide hydrolase [Bradyrhizobium japonicum]
Length = 465
Score = 33.6 bits (75), Expect = 2.0
Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 2/48 (4%)
Frame = -2
Query: 207 RPTGSRTLS*TPCGSPHGCRPAWRGSS--CSCGKSTTLSSCRASCGRARP 64
R + SRT + + GCR + RGS+ C+CG+ T + R++C A P
Sbjct: 21 RRSASRTDARRQSAAERGCRRSQRGSAEGCACGRQTGPRAARSACCTACP 70
>pir||T07090 metallothionein-II - soybean
gb|AAB71226.1| (AF004808) metallothionein-II protein [Glycine max]
Length = 85
Score = 32.5 bits (72), Expect = 4.5
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Frame = -2
Query: 225 RCYRATRPTGSRTLS*TPCGSPHGCRP------AWRGSSCSCGKSTTLSSCR 88
RC A TG CG GC P A GS C CG +SCR
Sbjct: 33 RCTSAGTATGGGDHVTCSCGEHCGCNPCSCPKIAAAGSGCRCGTDCACASCR 84
>gb|AAD21622.1| (AF128399) succinyl-CoA synthetase beta subunit [Pseudomonas
aeruginosa]
Length = 388
Score = 32.1 bits (71), Expect = 5.9
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 566 WLGQNGIRFQLSASYYP*AFVVILGCLNVNLILYLNSPMARCERGKLF 709
WLG+N + +Q A+ P + +++ C +++ LYL + + R R +F
Sbjct: 76 WLGKNLVTYQTDANGQPVSKILVESCTDIDKELYLGAVVDRSSRRIVF 123
>sp|Q60331|ASPG_METJA PROBABLE L-ASPARAGINASE (L-ASPARAGINE AMIDOHYDROLASE)
pir||D64302 L-asparaginase I - Methanococcus jannaschii
gb|AAB97996.1| (U67460) asparaginase (ansA) [Methanococcus jannaschii]
Length = 417
Score = 32.1 bits (71), Expect = 5.9
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -1
Query: 703 LPPFTSGHRTIQIKNEVNIEAPQDNHKSLRVVARGQLKPDTILPKPTPYPHNQHWQEGGL 524
LP TI++KN N+ ++N K++ ++A+G+ KP LP P N+ + +
Sbjct: 21 LPSTNENIITIKMKNGYNVGILKENVKNIEIIAKGE-KPKYELP-PLNIEKNEKLKTISI 78
Query: 523 LARGNTGRSE 494
L+ G T S+
Sbjct: 79 LSTGGTVASK 88
>gb|AAC06364.1| (AF052247) fork head domain protein FKD4 [Danio rerio]
Length = 343
Score = 32.1 bits (71), Expect = 5.9
Identities = 24/78 (30%), Positives = 32/78 (40%), Gaps = 2/78 (2%)
Frame = +1
Query: 301 YGIACYYQPTTGPGYTGSC*ALSYSGYSIPPLHRPEAYRSCGESPPYVH--VGLFWRMLS 474
YG+ C P PG GS L +PP + P+AY S P ++ R LS
Sbjct: 33 YGVQCDSAPAGNPGRLGSPAGL------LPPANPPKAYAEINSSEPEFQELKSVYRRTLS 86
Query: 475 PEPHLRLLISLCCPELEDLP 534
ISL C ++ P
Sbjct: 87 HAKPPYSYISLICMAIQQSP 106
>dbj|BAA09770.1| (D63483) The KIAA0149 gene product is related to Notch3. [Homo
sapiens]
Length = 830
Score = 31.7 bits (70), Expect = 7.8
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = -2
Query: 264 WWK-TCRWPRYNDPRCYRATRPTGSRTLS*TPCGSPHGCRPAWRGSSCSCGKSTTLSSCR 88
WW TCR P + R + TG+ C+P W G CS + S C
Sbjct: 154 WWSSTCRRPCQCNTAAARCEQATGACV-----------CKPGWWGRRCSFRCNCHGSPCE 202
Query: 87 ASCGR--ARPG 61
GR RPG
Sbjct: 203 QDSGRCACRPG 213
>ref|NP_003684.1| acetyl LDL receptor; SREC=scavenger receptor expressed by
endothelial cells
dbj|BAA24070.1| (D86864) acetyl LDL receptor [Homo sapiens]
Length = 830
Score = 31.7 bits (70), Expect = 7.8
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = -2
Query: 264 WWK-TCRWPRYNDPRCYRATRPTGSRTLS*TPCGSPHGCRPAWRGSSCSCGKSTTLSSCR 88
WW TCR P + R + TG+ C+P W G CS + S C
Sbjct: 154 WWSSTCRRPCQCNTAAARCEQATGACV-----------CKPGWWGRRCSFRCNCHGSPCE 202
Query: 87 ASCGR--ARPG 61
GR RPG
Sbjct: 203 QDSGRCACRPG 213
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242005844
Number of Sequences: 509459
Number of extensions: 5959127
Number of successful extensions: 17222
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 17206
Number of HSP's gapped (non-prelim): 25
length of query: 237
length of database: 159,777,284
effective HSP length: 54
effective length of query: 182
effective length of database: 132,266,498
effective search space: 24072502636
effective search space used: 24072502636
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)