Score E
Sequences producing significant alignments: (bits) Value
sp|Q10353|RL24_SCHPO 60S RIBOSOMAL PROTEIN L24 (L30) >gi|74... 185 3e-46
ref|NP_013109.1| Ylr009wp >gi|2131743|pir||S64831 ribosomal... 179 3e-44
gb|AAF17241.1|AF201949_1 (AF201949) 60S ribosomal protein L... 162 5e-39
pir||T00407 ribosomal protein L24 homolog T13E15.13 - Arabi... 148 5e-35
gb|AAF54637.1| (AE003691) CG6764 gene product [Drosophila m... 147 1e-34
sp|Q17606|RL24_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L24 >gi... 118 7e-26
emb|CAB86906.1| (AL132969) 60S ribosomal protein-like [Arab... 71 2e-11
sp|P50888|RL24_HORVU 60S RIBOSOMAL PROTEIN L24 >gi|7440778|... 70 3e-11
sp|O65743|RL24_CICAR 60S RIBOSOMAL PROTEIN L24 >gi|2961300|... 69 7e-11
sp|P38666|RL24_ARATH 60S RIBOSOMAL PROTEIN L24 68 9e-11
gb|AAD20138.1| (AC006282) 60S ribosomal protein L24 [Arabid... 68 1e-10
pir||E75109 lsu ribosomal protein l24e (rpl24e) PAB8165 - P... 67 3e-10
pir||T39071 60S ribosomal protein L24 - fission yeast (Schi... 66 6e-10
pir||T41324 60s ribosomal protein L24 - fission yeast (Schi... 64 1e-09
ref|NP_011664.1| Ribosomal protein L24B (rp29) (YL21) (L30B... 63 3e-09
ref|NP_011484.1| Ribosomal protein L24A (rp29) (YL21) (L30A... 63 4e-09
sp|P54064|R24E_METJA 50S RIBOSOMAL PROTEIN L24E >gi|2129252... 61 1e-08
sp|O29492|R24E_ARCFU 50S RIBOSOMAL PROTEIN L24E >gi|7440781... 60 3e-08
ref|NP_000977.1| ribosomal protein L24 >gi|730545|sp|P38663... 57 2e-07
gb|AAF53299.1| (AE003640) CG9282 gene product [Drosophila m... 57 3e-07
sp|P38665|RL24_KLULA 60S RIBOSOMAL PROTEIN L24 (L30) >gi|17... 55 6e-07
sp|Q9Y9A7|R24E_AERPE 50S RIBOSOMAL PROTEIN L24E >gi|7521364... 54 2e-06
sp|O26357|R24E_METTH 50S RIBOSOMAL PROTEIN L24E >gi|7440780... 48 1e-04
pir||T30926 hypothetical protein D1007.12 - Caenorhabditis ... 46 3e-04
gb|AAC63142.1| (AF011787) ribosomal protein L24 [Trypanosom... 45 0.001
sp|P14116|R24E_HALMA 50S RIBOSOMAL PROTEIN L24E (HL21/HL22)... 43 0.003
gb|AAF60491.1| (AC006733) contains similarity to Pfam famil... 38 0.16
sp|P77874|NIFD_HERSE NITROGENASE MOLYBDENUM-IRON PROTEIN AL... 32 5.4
sp|Q00239|NIFD_PLEBO NITROGENASE MOLYBDENUM-IRON PROTEIN AL... 32 7.0
pir||H72471 hypothetical protein APE2417 - Aeropyrum pernix... 32 7.0
gb|AAA93021.1| (U49859) dinitrogenase alpha subunit [Anabae... 32 7.0
gb|AAD56587.1|AF186772_1 (AF186772) surfeit 6 protein [Homo... 32 7.0
pir||T08528 probable DNA topoisomerase (EC 5.99.1.2) III - ... 32 9.2
sp|P06662|NIFD_THIFE NITROGENASE MOLYBDENUM-IRON PROTEIN AL... 32 9.2
>sp|Q10353|RL24_SCHPO 60S RIBOSOMAL PROTEIN L24 (L30)
pir||T38170 60s ribosomal protein l24-3 (L30) - fission yeast
(Schizosaccharomyces pombe)
emb|CAA93900.1| (Z70043) 60s ribosomal protein l24-3 (L30) [Schizosaccharomyces
pombe]
Length = 192
Score = 185 bits (466), Expect = 3e-46
Identities = 88/130 (67%), Positives = 105/130 (80%), Gaps = 1/130 (0%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
MR+ TCYFCS P YP GI FVRND++VFRFCRSKCHKNFKMKRNP K+ WTKA+RKA G
Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60
Query: 234 KEMTVDSTLQV-AARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKRERE 410
KEM D+ L V AARRNV VRYDR ++ TLNAM+RVSQ+ +RER+FY KR+AGKR +E
Sbjct: 61 KEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKRVSQVHAKRERLFYKKRLAGKRAQE 120
Query: 411 LATDRKLVIEN 443
L +KL+ +N
Sbjct: 121 LQEAQKLIAQN 131
>ref|NP_013109.1| Ylr009wp
pir||S64831 ribosomal protein L24 homolog YLR009w - yeast (Saccharomyces
cerevisiae)
emb|CAA97531.1| (Z73181) ORF YLR009w [Saccharomyces cerevisiae]
Length = 199
Score = 179 bits (450), Expect = 3e-44
Identities = 92/163 (56%), Positives = 112/163 (68%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
MRI C+FCS P YP GI FVRNDA+ FRFCRSKCHK FK +RNP KLKWTKAFRKA G
Sbjct: 1 MRIYQCHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAG 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKREREL 413
KE+ VDSTL A RRNV VRY+R L+ TL AM R+ +IR++RER FY RM G +E++
Sbjct: 61 KELAVDSTLTFAQRRNVPVRYNRELVATTLKAMARIEEIRQKRERAFYKNRMRGNKEKDF 120
Query: 414 ATDRKLVIENEHLLPPMRGIEKNRLCELGLIEEDIEETEQQRQ 542
D+KLV N LL +R +E R +L +E E +Q +
Sbjct: 121 LRDKKLVESNPELL-RIREVEIAR--KLAKEQERAESVSEQEE 160
>gb|AAF17241.1|AF201949_1 (AF201949) 60S ribosomal protein L30 isolog [Homo sapiens]
Length = 163
Score = 162 bits (405), Expect = 5e-39
Identities = 78/161 (48%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
MRIE CYFCS P YP G+ FVRND +VFRFC+SKCHKNFK KRNP K++WTKAFRKA G
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKREREL 413
KE+TVD++ + RRN ++Y R L KT++AM+RV +I+++R+ F R+ +E +
Sbjct: 61 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120
Query: 414 ATDRKLVIENEHLL-PPMRGIEKNRLCELGLIEEDIEETEQQ 536
D K V +N HL+ P+ G K + E ++++ E+ + +
Sbjct: 121 VQDIKEVKQNIHLIRAPLAG--KGKQLEEKMVQQLQEDVDME 160
>pir||T00407 ribosomal protein L24 homolog T13E15.13 - Arabidopsis thaliana
gb|AAC31838.1| (AC002388) 60S ribosomal protein L30 [Arabidopsis thaliana]
Length = 159
Score = 148 bits (371), Expect = 5e-35
Identities = 69/134 (51%), Positives = 94/134 (69%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
MR+E C+FCS YP GI FVRNDA++FRFCRSKCHKNFKMKRNP K+KWTKAFR A G
Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKREREL 413
K+MT D+T + +RN RYDR + TL A++++++IR RE R+ ++++L
Sbjct: 61 KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120
Query: 414 ATDRKLVIENEHLL 455
D K + +N H++
Sbjct: 121 NDDMKELDQNIHMV 134
>gb|AAF54637.1| (AE003691) CG6764 gene product [Drosophila melanogaster]
Length = 191
Score = 147 bits (367), Expect = 1e-34
Identities = 75/157 (47%), Positives = 104/157 (65%), Gaps = 5/157 (3%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
MRI+TCYFCS YP G+ FVRND +VF+FCR KCHK FK K+NP K+ WTKA+RKA G
Sbjct: 1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAG 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKREREL 413
KE+ +D + + RRNV ++Y R K L A++RV++I+E+R F +R+ R+ E+
Sbjct: 61 KELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIKEKRTSHFVMERLRKGRQVEI 120
Query: 414 ATDRKLVIENEHLL-PPMRGIEKNRLC----ELGLIEEDIEE 524
D K V N L+ P G+++ R E L+EED+ E
Sbjct: 121 QMDVKDVQRNMSLIRSPAAGLKQRRAQEAAEEAALMEEDLPE 162
>sp|Q17606|RL24_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L24
pir||T18884 hypothetical protein C03D6.8 - Caenorhabditis elegans
emb|CAA99764.1| (Z75525) similar to ribosomal protein~cDNA EST EMBL:C09853 comes
from this gene~cDNA EST yk331a1.3 comes from this
gene~cDNA EST yk331a1.5 comes from this gene~cDNA EST
yk361d3.3 comes from this gene~cDNA EST yk361d3.5 comes
from this gene~cDNA EST yk5>
Length = 162
Score = 118 bits (293), Expect = 7e-26
Identities = 54/103 (52%), Positives = 75/103 (72%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
MRIE CYFCS P YP GI FVRND+ VF+FCRS+C+K FK K+NP KL++TKA R+A G
Sbjct: 1 MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARRARG 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERR 362
KE+ D+T + RR+ V+Y+R + KT+ A + +S ++ +R
Sbjct: 61 KELINDATQLLEQRRDEPVKYERAMFQKTIEAAKTISALKTKR 103
>emb|CAB86906.1| (AL132969) 60S ribosomal protein-like [Arabidopsis thaliana]
Length = 163
Score = 70.6 bits (170), Expect = 2e-11
Identities = 45/130 (34%), Positives = 72/130 (54%), Gaps = 14/130 (10%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
++ E C F + YP +GI F+R+D++VF F SKC + F K P KL WT +RK
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62
Query: 234 KEMTVDSTLQVAARRNVTVR-YDR*LMGKTLNAME-------------RVSQIRERRERV 371
K+ ++ V RR T + Y R ++G TL ++ R + +RE +ER+
Sbjct: 63 KDAAQEA---VKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119
Query: 372 FY*KRMAGKRERELATDRKLVIEN 443
K ++ E A+ ++ V N
Sbjct: 120 KKTKDEKKAKKVEFASKQQKVKAN 143
>sp|P50888|RL24_HORVU 60S RIBOSOMAL PROTEIN L24
pir||T06178 ribosomal protein L24 - barley
emb|CAA63960.1| (X94296) L24 ribosomal protein [Hordeum vulgare]
Length = 162
Score = 69.9 bits (168), Expect = 3e-11
Identities = 41/125 (32%), Positives = 68/125 (53%), Gaps = 13/125 (10%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
++ E C F + YP KGI F+R+D++VF F SKC + F + P KL WT +RK
Sbjct: 3 LKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHK 62
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAME-------------RVSQIRERRERVF 374
K++ ++ + RR Y R ++G TL ++ R + +RE +ER+
Sbjct: 63 KDIHAEAAKK--RRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
Query: 375 Y*KRMAGKRERELATDRK 428
K ++ E+ +K
Sbjct: 121 KTKDEKKAKKAEVTKSQK 138
>sp|O65743|RL24_CICAR 60S RIBOSOMAL PROTEIN L24
emb|CAA12358.1| (AJ225027) ribosomal protein L24 [Cicer arietinum]
Length = 164
Score = 68.7 bits (165), Expect = 7e-11
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 14/122 (11%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
++ E C F YP +GI F+R D++VF F SKC + F + P KL WT FRK
Sbjct: 3 LKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHK 62
Query: 234 KEMTVDSTLQVAARRNVTVR-YDR*LMGKTLNAME-------------RVSQIRERRERV 371
K+ ++ V RR T + Y R ++G TL ++ R + +RE +ER+
Sbjct: 63 KDAAQEA---VKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERI 119
Query: 372 FY*KRMAGKRERELAT 419
K ++ E+A+
Sbjct: 120 KKTKDEKKAKKAEVAS 135
>sp|P38666|RL24_ARATH 60S RIBOSOMAL PROTEIN L24
Length = 163
Score = 68.3 bits (164), Expect = 9e-11
Identities = 39/106 (36%), Positives = 60/106 (55%), Gaps = 15/106 (14%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
++ E C F + YP +GI F+R+D++VF F SKC + F K P KL WT +RK
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLXPSKLAWTAIYRKQHK 62
Query: 234 KEMTVDSTLQVAARRNVTVR--YDR*LMGKTLNAME-------------RVSQIRERRER 368
K D+ + RR + Y R ++G TL ++ R + +RE +ER
Sbjct: 63 K----DAAQEAVKRRRXXTKXPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREXKER 118
Query: 369 V 371
+
Sbjct: 119 I 119
>gb|AAD20138.1| (AC006282) 60S ribosomal protein L24 [Arabidopsis thaliana]
Length = 177
Score = 67.5 bits (162), Expect = 1e-10
Identities = 40/103 (38%), Positives = 60/103 (57%), Gaps = 14/103 (13%)
Frame = +3
Query: 63 ETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADGKEM 242
E C F + YP +GI F+R+D++VF F SKC + F K P KL WT +RK K+
Sbjct: 19 ELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDA 78
Query: 243 TVDSTLQVAARRNVTVR-YDR*LMGKTLNAME-------------RVSQIRERRERV 371
++ V RR T + Y R ++G TL ++ R + +RE +ER+
Sbjct: 79 AQEA---VKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 132
>pir||E75109 lsu ribosomal protein l24e (rpl24e) PAB8165 - Pyrococcus abyssi
(strain Orsay)
emb|CAB49590.1| (AJ248285) LSU ribosomal protein L24E (rpl24E) [Pyrococcus abyssi]
Length = 67
Score = 66.7 bits (160), Expect = 3e-10
Identities = 29/57 (50%), Positives = 36/57 (62%)
Frame = +3
Query: 57 RIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKA 227
R C +C +P P G FVRND RV FC KC + + M RNP KLKWTKA+++A
Sbjct: 3 RWNVCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEA 59
>pir||T39071 60S ribosomal protein L24 - fission yeast (Schizosaccharomyces
pombe)
emb|CAB03611.1| (Z81317) 60S ribosomal protein L24 [Schizosaccharomyces pombe]
Length = 149
Score = 65.6 bits (157), Expect = 6e-10
Identities = 40/131 (30%), Positives = 64/131 (48%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
M++E C F YP G FVR D +VFRF K F ++NP +L WT +R+
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKREREL 413
K ++ + R TV++ R ++G L+ + + R +R V R A ++R+
Sbjct: 61 KGISEE---HAKKRTRRTVKHQRGIVGANLDV---IKEKRNQRPEVRAAARAAALKQRK- 113
Query: 414 ATDRKLVIENE 446
D+K E+E
Sbjct: 114 --DKKAASESE 122
>pir||T41324 60s ribosomal protein L24 - fission yeast (Schizosaccharomyces
pombe)
emb|CAA20919.1| (AL031603) 60s ribosomal protein L24 [Schizosaccharomyces pombe]
dbj|BAA84653.1| (AB032714) rpl24 [Schizosaccharomyces pombe]
Length = 149
Score = 64.4 bits (154), Expect = 1e-09
Identities = 39/131 (29%), Positives = 64/131 (48%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
M++E C F YP G FVR D +VFRF K F ++NP +L WT +R+
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKREREL 413
K ++ + R TV++ R ++G L+ + + R +R V R A ++R+
Sbjct: 61 KGISEE---HAKKRTRRTVKHQRGIVGANLDV---IKEKRNQRPEVRAAARAAALKQRK- 113
Query: 414 ATDRKLVIENE 446
D++ E+E
Sbjct: 114 --DKRAASESE 122
>ref|NP_011664.1| Ribosomal protein L24B (rp29) (YL21) (L30B); Rpl24bp
sp|P24000|R24B_YEAST 60S RIBOSOMAL PROTEIN L24-B (L30B) (RP29) (YL21)
pir||R6BYY0 ribosomal protein L24.e.B, cytosolic - yeast (Saccharomyces
cerevisiae)
gb|AAA34736.1| (M34387) ribosomal protein L30 (RPL30B), (3' end of exon not
determined) [Saccharomyces cerevisiae]
emb|CAA59806.1| (X85807) ORF G6635 [Saccharomyces cerevisiae]
emb|CAA97162.1| (Z72933) ORF YGR148c [Saccharomyces cerevisiae]
Length = 155
Score = 63.2 bits (151), Expect = 3e-09
Identities = 36/121 (29%), Positives = 65/121 (52%), Gaps = 1/121 (0%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
M++E F YP +G FVR D+++FRF SK FK ++NP ++ WT FRK
Sbjct: 1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHK 60
Query: 234 KEMTVDSTLQVAARRN-VTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKRERE 410
K +T +VA +R+ TV+ R + G +L+ ++ ++ + +++ +E++
Sbjct: 61 KGITE----EVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKK 116
Query: 411 LA 416
A
Sbjct: 117 RA 118
>ref|NP_011484.1| Ribosomal protein L24A (rp29) (YL21) (L30A); Rpl24ap
sp|P04449|R24A_YEAST 60S RIBOSOMAL PROTEIN L24-A (L30A) (RP29) (YL21)
pir||R6BYT9 ribosomal protein L24.e.A, cytosolic - yeast (Saccharomyces
cerevisiae)
gb|AAA35004.1| (K02650) ribosomal protein L30A [Saccharomyces cerevisiae]
emb|CAA96732.1| (Z72553) ORF YGL031c [Saccharomyces cerevisiae]
Length = 155
Score = 62.8 bits (150), Expect = 4e-09
Identities = 36/121 (29%), Positives = 65/121 (52%), Gaps = 1/121 (0%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
M++E F YP +G FVR D+++FRF SK FK ++NP ++ WT FRK
Sbjct: 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHK 60
Query: 234 KEMTVDSTLQVAARRN-VTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKRERE 410
K +T +VA +R+ TV+ R + G +L+ ++ ++ + +++ +E++
Sbjct: 61 KGITE----EVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKK 116
Query: 411 LA 416
A
Sbjct: 117 KA 118
>sp|P54064|R24E_METJA 50S RIBOSOMAL PROTEIN L24E
pir||H64449 ribosomal protein L24E - Methanococcus jannaschii
gb|AAB99205.1| (U67562) LSU ribosomal protein L24E [Methanococcus jannaschii]
Length = 70
Score = 60.9 bits (145), Expect = 1e-08
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = +3
Query: 66 TCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFR 221
TC FC P KG V D V FC SKC K+++M RNP KLKWTK ++
Sbjct: 6 TCSFCGYEIEPGKGKMVVEKDGTVLYFCSSKCEKSYRMGRNPRKLKWTKVYQ 57
>sp|O29492|R24E_ARCFU 50S RIBOSOMAL PROTEIN L24E
pir||F69345 LSU ribosomal protein L24E (rpl24E) homolog - Archaeoglobus
fulgidus
gb|AAB90471.1| (AE001051) LSU ribosomal protein L24E (rpl24E) [Archaeoglobus
fulgidus]
Length = 58
Score = 59.7 bits (142), Expect = 3e-08
Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKN-FKMKRNPFKLKWTKAFRK 224
M C FC P G +VR D RVF FC KC KN K+KR P KLKWTK + +
Sbjct: 1 MEKRVCSFCGYDIEPGTGKMYVRRDGRVFYFCSGKCEKNMLKLKRKPRKLKWTKHYSR 58
>ref|NP_000977.1| ribosomal protein L24
sp|P38663|RL24_HUMAN 60S RIBOSOMAL PROTEIN L24 (L30)
pir||JN0549 ribosomal protein L24 - human
pir||JC2444 ribosomal protein L24 - rat
gb|AAC28251.1| (M94314) ribosomal protein L30 [Homo sapiens]
emb|CAA55203.1| (X78443) ribosomal protein L24 [Rattus norvegicus]
gb|AAC16388.1| (AF063243) ribosomal protein L30 [Bos taurus]
Length = 157
Score = 57.0 bits (135), Expect = 2e-07
Identities = 28/90 (31%), Positives = 45/90 (49%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
M++E C F YP G + R D +VF+F +KC F KRNP ++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTL 323
K + + + R V++ R + G +L
Sbjct: 61 KGQSEEIQKK---RTRRAVKFQRAITGASL 87
>gb|AAF53299.1| (AE003640) CG9282 gene product [Drosophila melanogaster]
Length = 155
Score = 56.6 bits (134), Expect = 3e-07
Identities = 29/90 (32%), Positives = 48/90 (53%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
M+I C F YP G T V+ D + F F KC +++ MKRNP K+ WT +R+
Sbjct: 1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHR 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTL 323
K + +++ + R T ++ R ++G +L
Sbjct: 61 KGIEEEASKK---RTRRTQKFQRAIVGASL 87
>sp|P38665|RL24_KLULA 60S RIBOSOMAL PROTEIN L24 (L30)
gb|AAA35269.1| (L05777) ribosomal protein L30 [Kluyveromyces lactis]
Length = 155
Score = 55.4 bits (131), Expect = 6e-07
Identities = 36/119 (30%), Positives = 62/119 (51%), Gaps = 1/119 (0%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADG 233
M++E F YP +G FVR D+++FRF SK F ++NP ++ WT +R+
Sbjct: 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHK 60
Query: 234 KEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAM-ERVSQIRERRERVFY*KRMAGKRERE 410
K +T + + R +V+ R ++G +L + ER S E R+ K+ A K +++
Sbjct: 61 KGITEEVARK---RTRKSVKAQRAVVGASLELIKERRSLKPEVRKAQRDEKKKADKEKKK 117
>sp|Q9Y9A7|R24E_AERPE 50S RIBOSOMAL PROTEIN L24E
pir||A72467 probable ribosomal protein L24 APES070 - Aeropyrum pernix (strain
K1)
dbj|BAA81393.1| (AP000064) 63aa long hypothetical 50S ribosomal protein L24
[Aeropyrum pernix]
Length = 63
Score = 53.9 bits (127), Expect = 2e-06
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 66 TCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNF-KMKRNPFKLKWTKAFRKA 227
TC FC P G+ +V + ++ FC SKC+KNF K++R P KL+W + +K+
Sbjct: 6 TCSFCGGSIEPGTGLMYVLRNGQILWFCSSKCYKNFVKLRRKPDKLEWVRKVKKS 60
>sp|O26357|R24E_METTH 50S RIBOSOMAL PROTEIN L24E
pir||C69132 ribosomal protein L24 - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB84763.1| (AE000812) ribosomal protein L24 [Methanobacterium
thermoautotrophicum]
Length = 53
Score = 48.0 bits (112), Expect = 1e-04
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 60 IETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKN-FKMKRNPFKLKWTK 212
+ C FC P G +V+ D ++ FC SKC KN K+ R P K+KW K
Sbjct: 1 MRVCSFCHEEIEPGTGKMYVKRDGTIYFFCSSKCEKNMIKLGRVPRKVKWVK 52
>pir||T30926 hypothetical protein D1007.12 - Caenorhabditis elegans
gb|AAB54218.1| (AF003151) Similar to 60S ribosomal protein L24; coded for by C.
elegans cDNA yk138g11.3; coded for by C. elegans cDNA
yk172a2.3; coded for by C. elegans cDNA yk138g11.5;
coded for by C. elegans cDNA yk172a2.5; coded for by C.
elegans cDNA yk170h5.5; c>
Length = 159
Score = 46.5 bits (108), Expect = 3e-04
Identities = 20/56 (35%), Positives = 30/56 (52%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFR 221
M++ETC + +P G VR D +V F K K K++RNP ++WT +R
Sbjct: 1 MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYR 56
>gb|AAC63142.1| (AF011787) ribosomal protein L24 [Trypanosoma brucei]
Length = 125
Score = 44.5 bits (103), Expect = 0.001
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Frame = +3
Query: 54 MRIETCYFCSRPAYPSKGITFVR----NDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFR 221
MR C F +P G +V + V F R KC + K+NP + WT+ +R
Sbjct: 1 MRTIDCEFSHFAVHPGHGRRYVPFAFLSTKPVLTFARPKCFAMYMRKKNPRFIAWTRTYR 60
Query: 222 KADGKEMTVDSTLQVAARRNVTVRYDR*LMGKTLNAMERVSQIRERRERVFY*KRMAGKR 401
+ K T + AAR TVR +R ++G L+ ++ V ++ +R GK
Sbjct: 61 RIHRKTTTDRVGRRRAAR---TVRAERAIVGAELSYIQEVRAKAKKVDRT-----AKGKA 112
Query: 402 ERELATDRK 428
RE RK
Sbjct: 113 VREEMAARK 121
>sp|P14116|R24E_HALMA 50S RIBOSOMAL PROTEIN L24E (HL21/HL22)
pir||R6HS21 ribosomal protein HL21 - Haloarcula marismortui
Length = 66
Score = 43.4 bits (100), Expect = 0.003
Identities = 20/60 (33%), Positives = 24/60 (39%)
Frame = +3
Query: 57 RIETCYFCSRPAYPSKGITFVRNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADGK 236
R C +C P G FV D FC SKC N + R L+WT R G+
Sbjct: 2 RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 61
>gb|AAF60491.1| (AC006733) contains similarity to Pfam family PF00400 (WD domain,
G-beta repeat), score=31.6, E=1.8e-05, N=2
[Caenorhabditis elegans]
Length = 3885
Score = 37.5 bits (85), Expect = 0.16
Identities = 30/73 (41%), Positives = 46/73 (62%), Gaps = 10/73 (13%)
Frame = +3
Query: 333 ERVSQIRERRERVFY*KRMAGKRERELATDRKLVIE-----NEHLLPPMRGIEK--NRLC 491
ER SQ RER+ER Y + K RELA K IE N+H +P +R + ++
Sbjct: 2230 ERRSQ-RERKEREAYGRMTGAKYRRELANTEKQEIEKMKIMNKHWMPALRKKIRIARKVI 2288
Query: 492 ELG--LIEEDIEE-TEQQRQMSY 551
E+G ++EED+ + E Q +M++
Sbjct: 2289 EIGRLMVEEDVRKWMEYQYEMTF 2311
>sp|P77874|NIFD_HERSE NITROGENASE MOLYBDENUM-IRON PROTEIN ALPHA CHAIN (NITROGENASE
COMPONENT I) (DINITROGENASE)
emb|CAA90933.1| (Z54207) nitrogenase Mo-Fe protein alpha chain [Herbaspirillum
seropedicae]
Length = 484
Score = 32.5 bits (72), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 426 KLVIENEHLLPPMRGIEKNRLCELGLIEEDIEETEQQRQMSY 551
K+V E + L P +GI C +GLI +DIE +++ Y
Sbjct: 134 KIVDEIQELFPLNKGISVQSECPIGLIGDDIEAVSKKKSKQY 175
>sp|Q00239|NIFD_PLEBO NITROGENASE MOLYBDENUM-IRON PROTEIN ALPHA CHAIN (NITROGENASE
COMPONENT I) (DINITROGENASE)
pir||JQ2156 nitrogenase (EC 1.18.6.1) molybdenum-iron protein alpha chain -
Plectonema boryanum
dbj|BAA00569.1| (D00666) alpha-subunit of dinitrogenase [Plectonema boryanum]
prf||1808318E nifD gene [Plectonema boryanum]
Length = 494
Score = 32.1 bits (71), Expect = 7.0
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 426 KLVIENEHLLPPMRGIEKNRLCELGLIEEDIE 521
KL+ E E L P RGI C +GLI +DIE
Sbjct: 141 KLITELEELFPLNRGISIQSECPIGLIGDDIE 172
>pir||H72471 hypothetical protein APE2417 - Aeropyrum pernix (strain K1)
dbj|BAA81432.1| (AP000064) 135aa long hypothetical protein [Aeropyrum pernix]
Length = 135
Score = 32.1 bits (71), Expect = 7.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 779 LLRSANSESSSYYKKRKAVTLERTLPTASKLVLEXEPLLPCMWGS 645
LL +A ++ + Y+K + LER + +S+L E L P WGS
Sbjct: 30 LLEAARVQALTVYRKIRGSCLERRVAESSQLAFEIASLEPLGWGS 74
>gb|AAA93021.1| (U49859) dinitrogenase alpha subunit [Anabaena variabilis]
Length = 491
Score = 32.1 bits (71), Expect = 7.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 426 KLVIENEHLLPPMRGIEKNRLCELGLIEEDIEETEQQR 539
KL+ E E L P RGI C +GLI +DIE +++
Sbjct: 138 KLIDEIEELFPLNRGISIQSECPIGLIGDDIEAVAKKK 175
>gb|AAD56587.1|AF186772_1 (AF186772) surfeit 6 protein [Homo sapiens]
Length = 361
Score = 32.1 bits (71), Expect = 7.0
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Frame = +3
Query: 120 RNDARVFRFCRSKCHKNFKMKRNPFKLKWTKAFRKADGKEMTVDS-TLQVAARRNVTVRY 296
R AR R + K + K+KWT KA+G ++ D LQ A +R R
Sbjct: 242 RLQARQSRLDELRGQDEGKAQELEAKMKWTNLLYKAEGVKIRDDERLLQEALKRKEKRRA 301
Query: 297 DR*LM--GKTLNAMERVSQIRERRERVFY*KRMAGKRERELATDRK 428
R +T +E++ Q ++RR + ++ A + ER L RK
Sbjct: 302 QRQRRWEKRTAGVVEKMQQRQDRRRQNLR-RKKAARAERRLLRARK 346
>pir||T08528 probable DNA topoisomerase (EC 5.99.1.2) III - Enterobacter
aerogenes plasmid R751
gb|AAC64472.1| (U67194) TraE [Enterobacter aerogenes]
Length = 687
Score = 31.7 bits (70), Expect = 9.2
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 572 DIWRSCSVYYNTTRTSPAHAGAFSSCPTCRARGAXSQGRACWRWEEYA-PA*QPCAFC 742
D+ +C Y T + + A + PTCR+R ++ RACWR + P +P +C
Sbjct: 311 DVLNTCQALYETHKLTCTRA---PTAPTCRSRSTPTR-RACWRRSSTSTPTGRPGRWC 364
>sp|P06662|NIFD_THIFE NITROGENASE MOLYBDENUM-IRON PROTEIN ALPHA CHAIN (NITROGENASE
COMPONENT I) (DINITROGENASE)
pir||NIBCAT nitrogenase (EC 1.18.6.1) molybdenum-iron protein alpha chain -
Thiobacillus ferrooxidans
gb|AAA27375.1| (M15238) molybdenum-iron protein alpha-subunit [Acidithiobacillus
ferrooxidans]
Length = 489
Score = 31.7 bits (70), Expect = 9.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 426 KLVIENEHLLPPMRGIEKNRLCELGLIEEDIEETEQQRQMSY 551
KL+ E E L P +GI C +GLI +DIE +++ +
Sbjct: 142 KLMDELEELFPMSKGITVQSECPIGLIGDDIEAVSKKKAAEF 183
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213924382
Number of Sequences: 509459
Number of extensions: 4095348
Number of successful extensions: 12018
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11981
Number of HSP's gapped (non-prelim): 37
length of query: 270
length of database: 159,777,284
effective HSP length: 54
effective length of query: 215
effective length of database: 132,266,498
effective search space: 28437297070
effective search space used: 28437297070
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)