Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001403.1| eukaryotic translation initiation factor 1... 114 1e-36
pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a 114 1e-36
gb|AAC63934.1| (AF026481) eIF-1A [Mus musculus] 113 2e-36
emb|CAA17281.1| (AL021920) dJ163M9.1 [Homo sapiens] 112 4e-36
ref|NP_004672.1| eukaryotic translation initiation factor 1... 112 5e-36
pir||C53045 translation initiation factor eIF-4C - human 110 2e-35
sp|P47814|IF1A_RABIT EUKARYOTIC TRANSLATION INITIATION FACT... 108 7e-35
pir||B53045 translation initiation factor eIF-1A - rabbit 108 7e-35
sp|P55877|IF1A_SCHPO EUKARYOTIC TRANSLATION INITIATION FACT... 112 7e-34
dbj|BAA19134.1| (AB000518) translation initiation factor eI... 112 7e-34
gb|AAD47075.1|AF164151_1 (AF164151) translation initiation ... 106 8e-33
gb|AAF55526.1| (AE003721) CG8053 gene product [Drosophila m... 106 2e-32
gb|AAF44294.1|AF169359_1 (AF169359) eukaryotic translation ... 104 7e-32
gb|AAD25828.1|AC006951_7 (AC006951) putative translation in... 96 2e-30
gb|AAC69495.1| (AF099920) Contains similarity to Pfam domai... 97 5e-29
sp|P56331|IF1A_ONOVI EUKARYOTIC TRANSLATION INITIATION FACT... 91 7e-29
sp|P47815|IF1A_WHEAT EUKARYOTIC TRANSLATION INITIATION FACT... 91 2e-28
pir||A53045 translation initiation factor eIF-1A - wheat (f... 91 2e-28
ref|NP_013987.1| Translation initiation factor eIF1A; Tif11... 100 3e-28
sp|Q60872|IF1A_MOUSE EUKARYOTIC TRANSLATION INITIATION FACT... 55 9e-07
sp|O29481|IF1A_ARCFU PUTATIVE TRANSLATION INITIATION FACTOR... 51 2e-05
sp|O27085|IF1A_METTH PUTATIVE TRANSLATION INITIATION FACTOR... 50 3e-05
sp|Q03590|IF1A_THEAC PUTATIVE TRANSLATION INITIATION FACTOR... 45 8e-04
sp|Q57887|IF1A_METJA PUTATIVE TRANSLATION INITIATION FACTOR... 43 0.003
pir||H71034 probable translation initiation factor eIF-1A -... 43 0.004
pir||B75179 translation initiation factor aif-1a (aif1a) PA... 43 0.004
sp|O82712|RL15_QUESU 60S RIBOSOMAL PROTEIN L15 >gi|3688526|... 41 0.019
ref|NP_055616.1| KIAA0435 gene product >gi|2662151|dbj|BAA2... 38 0.17
ref|NP_038636.1| nascent polypeptide-associated complex alp... 36 0.49
ref|NP_014652.1| Yor009wp >gi|2132864|pir||S61993 probable ... 34 1.4
pir||T13160 protein CNK - fruit fly (Drosophila melanogaste... 34 1.9
gb|AAF37892.1| (AF238478) histone H3 [Gibberella circinata] 34 2.5
ref|NP_009297.1| v-abl Abelson murine leukemia viral oncoge... 34 2.5
ref|NP_005148.1| v-abl Abelson murine leukemia viral oncoge... 34 2.5
ref|NP_031991.1| Ena-vasodilator stimulated phosphoprotein ... 33 3.2
gb|AAD47129.1|AF026205_6 (AF026205) T23E7.2a gene product [... 33 3.2
gb|AAB71257.1| (AF026205) T23E7.2a gene product [Caenorhabd... 33 3.2
gb|AAB71258.1| (AF026205) T23E7.2a gene product [Caenorhabd... 33 3.2
gb|AAC98529.1| (U18246) RNA-dependent RNA polymerase [Helic... 33 4.2
emb|CAA81388.1| (Z26645) verprolin [Saccharomyces cerevisiae] 32 5.6
emb|CAA57031.1| (X81123) unnamed protein product [Escherich... 32 5.6
ref|NP_013441.1| Proline-rich protein verprolin; Vrp1p >gi|... 32 5.6
pir||T18535 high molecular mass nuclear antigen - chicken (... 32 5.6
gb|AAC31918.1| (AF079447) myosin heavy chain kinase C [Dict... 32 7.3
pir||S24169 mucin - rat 32 9.5
dbj|BAA89659.1| (D10032) gag-pol precursor polyprotein [Bab... 32 9.5
pir||S53363 mucin 5AC (clone JER58) - human (fragment) >gi|... 32 9.5
pir||A71558 probable low calcium response E - Chlamydia tra... 32 9.5
emb|CAA76017.1| (Y16065) a6 [Drosophila melanogaster] >gi|2... 32 9.5
pir||T06150 hypothetical protein F24J7.130 - Arabidopsis th... 32 9.5
sp|P55046|TYRT_STRAL TYROSINASE CO-FACTOR >gi|1200135|emb|C... 32 9.5
dbj|BAA91376.1| (AK000783) unnamed protein product [Homo sa... 32 9.5
emb|CAB88499.1| (AL353817) conserved hypothetical protein [... 32 9.5
gb|AAF45661.1| (AE003421) a6 gene product [Drosophila melan... 32 9.5
emb|CAA64402.1| (X94917) head-elevated expression in 0.9 kb... 32 9.5
ref|NP_057271.1| bridging integrator 2 >gi|5852834|gb|AAD54... 32 9.5
gb|AAF57107.1| (AE003776) l(3)03670 gene product [Drosophil... 32 9.5
gb|AAC48897.1| (U64984) unknown [Bacteriophage Mx8] 32 9.5
ref|NP_057377.1| breast cancer associated protein BRAP1 >gi... 32 9.5
sp|P03341|GAG_BAEVM GAG POLYPROTEIN [CONTAINS: INNER COAT P... 32 9.5
>ref|NP_001403.1| eukaryotic translation initiation factor 1A
sp|P47813|IF1A_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 1A (EIF-1A) (EIF-4C)
gb|AAA19812.1| (L18960) protein synthesis factor [Homo sapiens]
Length = 144
Score = 114 bits (282), Expect(2) = 1e-36
Identities = 55/77 (71%), Positives = 64/77 (82%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE +CF+G KRL +IRGK+RKKVWIN SDIIL+ L D QDNK DVILKY ADEAR+
Sbjct: 43 GNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARS 102
Query: 372 LKCYRELAENAEINDTD 422
LK Y EL E+A+IN+TD
Sbjct: 103 LKAYGELPEHAKINETD 119
Score = 61.3 bits (146), Expect(2) = 1e-36
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKEDG EYAQVIKML
Sbjct: 7 KGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKML 42
>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a
Length = 143
Score = 114 bits (282), Expect(2) = 1e-36
Identities = 55/77 (71%), Positives = 64/77 (82%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE +CF+G KRL +IRGK+RKKVWIN SDIIL+ L D QDNK DVILKY ADEAR+
Sbjct: 42 GNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARS 101
Query: 372 LKCYRELAENAEINDTD 422
LK Y EL E+A+IN+TD
Sbjct: 102 LKAYGELPEHAKINETD 118
Score = 61.3 bits (146), Expect(2) = 1e-36
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKEDG EYAQVIKML
Sbjct: 6 KGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKML 41
>gb|AAC63934.1| (AF026481) eIF-1A [Mus musculus]
Length = 144
Score = 113 bits (280), Expect(2) = 2e-36
Identities = 54/77 (70%), Positives = 64/77 (82%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE +CF+G +RL +IRGK+RKKVWIN SDIIL+ L D QDNK DVILKY ADEAR+
Sbjct: 43 GNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARS 102
Query: 372 LKCYRELAENAEINDTD 422
LK Y EL E+A+IN+TD
Sbjct: 103 LKAYGELPEHAKINETD 119
Score = 61.3 bits (146), Expect(2) = 2e-36
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKEDG EYAQVIKML
Sbjct: 7 KGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKML 42
>emb|CAA17281.1| (AL021920) dJ163M9.1 [Homo sapiens]
Length = 144
Score = 112 bits (278), Expect(2) = 4e-36
Identities = 54/77 (70%), Positives = 64/77 (82%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE +CF+G KRL +IRGK+RKKVWIN SDIIL+ L D QDNK DVILKY ADEAR+
Sbjct: 43 GNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARS 102
Query: 372 LKCYRELAENAEINDTD 422
L+ Y EL E+A+IN+TD
Sbjct: 103 LQAYGELPEHAKINETD 119
Score = 61.3 bits (146), Expect(2) = 4e-36
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKEDG EYAQVIKML
Sbjct: 7 KGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKML 42
>ref|NP_004672.1| eukaryotic translation initiation factor 1A, Y chromosome
sp|O14602|IF1Y_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 1A, Y-CHROMOSOMAL (EIF-1A
Y ISOFORM) (EIF-4C)
gb|AAC51834.1| (AF000987) eIF-1A, Y isoform [Homo sapiens]
Length = 144
Score = 112 bits (277), Expect(2) = 5e-36
Identities = 55/77 (71%), Positives = 63/77 (81%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE LCF+G KRL +IRGK+RKKVWIN SDIIL+ L D QDNK DVILKY ADEAR+
Sbjct: 43 GNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARS 102
Query: 372 LKCYRELAENAEINDTD 422
LK Y L E+A+IN+TD
Sbjct: 103 LKAYGGLPEHAKINETD 119
Score = 61.3 bits (146), Expect(2) = 5e-36
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKEDG EYAQVIKML
Sbjct: 7 KGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKML 42
>pir||C53045 translation initiation factor eIF-4C - human
Length = 144
Score = 110 bits (272), Expect(2) = 2e-35
Identities = 54/77 (70%), Positives = 63/77 (81%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE + F+G KRL +IRGK+RKKVWIN SDIIL+ L D QDNK DVILKY ADEAR+
Sbjct: 43 GNGRLEAMLFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARS 102
Query: 372 LKCYRELAENAEINDTD 422
LK Y EL E+A+IN+TD
Sbjct: 103 LKAYGELPEHAKINETD 119
Score = 61.3 bits (146), Expect(2) = 2e-35
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKEDG EYAQVIKML
Sbjct: 7 KGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKML 42
>sp|P47814|IF1A_RABIT EUKARYOTIC TRANSLATION INITIATION FACTOR 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 108 bits (267), Expect(2) = 7e-35
Identities = 53/77 (68%), Positives = 63/77 (80%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE + F+G KRL +IRGK+RKKVWIN SDIIL+ L + QDNK DVILKY ADEAR+
Sbjct: 43 GNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARS 102
Query: 372 LKCYRELAENAEINDTD 422
LK Y EL E+A+IN+TD
Sbjct: 103 LKAYGELPEHAKINETD 119
Score = 61.3 bits (146), Expect(2) = 7e-35
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKEDG EYAQVIKML
Sbjct: 7 KGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKML 42
>pir||B53045 translation initiation factor eIF-1A - rabbit
Length = 143
Score = 108 bits (267), Expect(2) = 7e-35
Identities = 53/77 (68%), Positives = 63/77 (80%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE + F+G KRL +IRGK+RKKVWIN SDIIL+ L + QDNK DVILKY ADEAR+
Sbjct: 42 GNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARS 101
Query: 372 LKCYRELAENAEINDTD 422
LK Y EL E+A+IN+TD
Sbjct: 102 LKAYGELPEHAKINETD 118
Score = 61.3 bits (146), Expect(2) = 7e-35
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKEDG EYAQVIKML
Sbjct: 6 KGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKML 41
>sp|P55877|IF1A_SCHPO EUKARYOTIC TRANSLATION INITIATION FACTOR 1A (EIF-1A) (EIF-4C)
pir||T40002 Tif11p - fission yeast (Schizosaccharomyces pombe)
emb|CAB08783.1| (Z95397) eukaryotic translation initiation factor 1a
[Schizosaccharomyces pombe]
Length = 138
Score = 112 bits (277), Expect(2) = 7e-34
Identities = 55/77 (71%), Positives = 63/77 (81%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG +E CF+G KRL +IRGK+RKKVWINQ DIILL+L + QD KGDVILKYTADEART
Sbjct: 43 GNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQDEKGDVILKYTADEART 102
Query: 372 LKCYRELAENAEINDTD 422
LK EL E A+IN+TD
Sbjct: 103 LKNQGELPETAKINETD 119
Score = 53.9 bits (127), Expect(2) = 7e-34
Identities = 23/36 (63%), Positives = 30/36 (82%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN++++RELT+ E+G YAQV KML
Sbjct: 7 KGGKNRRRGKNENENEKRELTYAEEGQMYAQVTKML 42
>dbj|BAA19134.1| (AB000518) translation initiation factor eIF1A [Schizosaccharomyces
pombe]
Length = 136
Score = 112 bits (277), Expect(2) = 7e-34
Identities = 55/77 (71%), Positives = 63/77 (81%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG +E CF+G KRL +IRGK+RKKVWINQ DIILL+L + QD KGDVILKYTADEART
Sbjct: 41 GNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQDEKGDVILKYTADEART 100
Query: 372 LKCYRELAENAEINDTD 422
LK EL E A+IN+TD
Sbjct: 101 LKNQGELPETAKINETD 117
Score = 53.9 bits (127), Expect(2) = 7e-34
Identities = 23/36 (63%), Positives = 30/36 (82%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN++++RELT+ E+G YAQV KML
Sbjct: 5 KGGKNRRRGKNENENEKRELTYAEEGQMYAQVTKML 40
>gb|AAD47075.1|AF164151_1 (AF164151) translation initiation factor 4C (1A) [Anopheles
gambiae]
Length = 148
Score = 106 bits (263), Expect(2) = 8e-33
Identities = 51/76 (67%), Positives = 59/76 (77%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE +CF+G KRL +IRGK+RKKVWINQ DIIL+ L D QD+K DVILKYT DEAR
Sbjct: 43 GNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDSKADVILKYTPDEARN 102
Query: 372 LKCYRELAENAEINDT 419
LK Y E E+ IN+T
Sbjct: 103 LKTYGEFPESVRINET 118
Score = 55.8 bits (132), Expect(2) = 8e-33
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKED EYAQV KML
Sbjct: 7 KGGKNRRRGKNENESEKRELIFKEDEQEYAQVTKML 42
>gb|AAF55526.1| (AE003721) CG8053 gene product [Drosophila melanogaster]
Length = 148
Score = 106 bits (262), Expect(2) = 2e-32
Identities = 51/76 (67%), Positives = 59/76 (77%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE +CF+G KRL +IRGK+RKKVWINQ DIIL+ L D QD+K DVILKYT DEAR
Sbjct: 43 GNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILVGLRDYQDSKADVILKYTPDEARN 102
Query: 372 LKCYRELAENAEINDT 419
LK Y E E+ IN+T
Sbjct: 103 LKTYGEFPESVRINET 118
Score = 54.7 bits (129), Expect(2) = 2e-32
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKED EYAQV KML
Sbjct: 7 KGGKNRRRGKNENEFEKRELIFKEDQQEYAQVTKML 42
>gb|AAF44294.1|AF169359_1 (AF169359) eukaryotic translation initiation factor 1A [Drosophila
melanogaster]
Length = 148
Score = 104 bits (258), Expect(2) = 7e-32
Identities = 50/76 (65%), Positives = 59/76 (76%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG LE +CF+G KRL +IRGK+RKKVWINQ +IIL+ L D QD+K DVILKYT DEAR
Sbjct: 43 GNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGEIILVGLRDYQDSKADVILKYTPDEARN 102
Query: 372 LKCYRELAENAEINDT 419
LK Y E E+ IN+T
Sbjct: 103 LKTYGEFPESVRINET 118
Score = 54.7 bits (129), Expect(2) = 7e-32
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG EN+ ++REL FKED EYAQV KML
Sbjct: 7 KGGKNRRRGKNENEFEKRELIFKEDQQEYAQVTKML 42
>gb|AAD25828.1|AC006951_7 (AC006951) putative translation initiation factor eIF-1A
[Arabidopsis thaliana]
Length = 145
Score = 96.0 bits (235), Expect(2) = 2e-30
Identities = 45/75 (60%), Positives = 55/75 (73%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG E +C +G+KRL +IRGKM KKVWI DI+L+ L D QD+K DVILKY +DEAR
Sbjct: 43 GNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARL 102
Query: 372 LKCYRELAENAEIND 416
LK Y EL EN +N+
Sbjct: 103 LKAYGELPENTRLNE 117
Score = 58.6 bits (139), Expect(2) = 2e-30
Identities = 25/36 (69%), Positives = 31/36 (85%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNR+RG E DD++REL FKEDG EYAQV++ML
Sbjct: 7 KGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRML 42
>gb|AAC69495.1| (AF099920) Contains similarity to Pfam domain: PF01176 (eIF-1a),
Score=207.8, E-value=5.4e-59, N=1 [Caenorhabditis
elegans]
Length = 216
Score = 97.1 bits (238), Expect(2) = 5e-29
Identities = 46/77 (59%), Positives = 59/77 (75%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG ++ CF+G +R+ +IRGK+RKKVWIN DIIL+ L D QD+KGDVILKYT DEAR
Sbjct: 43 GNGRVQVFCFDGKQRVCHIRGKLRKKVWINVGDIILVGLRDYQDDKGDVILKYTPDEARR 102
Query: 372 LKCYRELAENAEINDTD 422
LK + ENA++N+ D
Sbjct: 103 LKNEGLIPENAKLNEND 119
Score = 52.7 bits (124), Expect(2) = 5e-29
Identities = 24/36 (66%), Positives = 27/36 (74%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNRRRG END +REL KE+G EY QV KML
Sbjct: 7 KGGKNRRRGKNENDFMKRELDLKEEGQEYGQVSKML 42
>sp|P56331|IF1A_ONOVI EUKARYOTIC TRANSLATION INITIATION FACTOR 1A (EIF-1A) (EIF-4C)
pir||T08000 translation initiation factor eIF-1A - common sainfoin
gb|AAB81996.1| (AF026804) eukaryotic translation initiation factor eIF-1A
[Onobrychis viciifolia]
Length = 145
Score = 91.3 bits (223), Expect(2) = 7e-29
Identities = 44/75 (58%), Positives = 53/75 (70%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG E +C +G+KRL +IRGKM KKVWI DIIL+ L D QD+K DVILK DEAR
Sbjct: 43 GNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARL 102
Query: 372 LKCYRELAENAEIND 416
LK Y EL +N +N+
Sbjct: 103 LKAYGELPDNTRLNE 117
Score = 58.2 bits (138), Expect(2) = 7e-29
Identities = 25/36 (69%), Positives = 30/36 (82%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNR+RG E DD +REL FKEDG EYAQV++ML
Sbjct: 7 KGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRML 42
>sp|P47815|IF1A_WHEAT EUKARYOTIC TRANSLATION INITIATION FACTOR 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 90.9 bits (222), Expect(2) = 2e-28
Identities = 43/75 (57%), Positives = 53/75 (70%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG E +C +G+KRL +IRGKM KKVWI DI+L+ L D QD+K DVILKY DEAR
Sbjct: 43 GNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARL 102
Query: 372 LKCYRELAENAEIND 416
LK Y EL + +N+
Sbjct: 103 LKAYGELPDTVRLNE 117
Score = 57.0 bits (135), Expect(2) = 2e-28
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNR+RG E DD +REL FKEDG EYAQV +ML
Sbjct: 7 KGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRML 42
>pir||A53045 translation initiation factor eIF-1A - wheat (fragment)
Length = 143
Score = 90.9 bits (222), Expect(2) = 2e-28
Identities = 43/75 (57%), Positives = 53/75 (70%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG E +C +G+KRL +IRGKM KKVWI DI+L+ L D QD+K DVILKY DEAR
Sbjct: 42 GNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARL 101
Query: 372 LKCYRELAENAEIND 416
LK Y EL + +N+
Sbjct: 102 LKAYGELPDTVRLNE 116
Score = 57.0 bits (135), Expect(2) = 2e-28
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGKNR+RG E DD +REL FKEDG EYAQV +ML
Sbjct: 6 KGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRML 41
>ref|NP_013987.1| Translation initiation factor eIF1A; Tif11p
sp|P38912|IF1A_YEAST EUKARYOTIC TRANSLATION INITIATION FACTOR 1A (EIF-1A) (EIF-4C)
pir||S47943 translation initiation factor eIF-1A - yeast (Saccharomyces
cerevisiae)
gb|AAA82039.1| (U11585) translation initiation factor 1A [Saccharomyces
cerevisiae]
emb|CAA89243.1| (Z49260) Tif11p [Saccharomyces cerevisiae]
Length = 153
Score = 99.8 bits (245), Expect(2) = 3e-28
Identities = 47/77 (61%), Positives = 62/77 (80%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
GNG +E CF+G+KR+++IRGK+RKKVW+ Q DIIL++L D QD++ DV+ KY DEART
Sbjct: 43 GNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEART 102
Query: 372 LKCYRELAENAEINDTD 422
LK EL ENA+IN+TD
Sbjct: 103 LKNQGELPENAKINETD 119
Score = 47.6 bits (111), Expect(2) = 3e-28
Identities = 20/36 (55%), Positives = 27/36 (74%)
Frame = +2
Query: 83 QGGKNRRRGTKENDDQRRELTFKEDGHEYAQVIKML 190
+GGK RRG ++D +REL +KE+G EYAQ+ KML
Sbjct: 7 KGGKKGRRGKNDSDGPKRELIYKEEGQEYAQITKML 42
>sp|Q60872|IF1A_MOUSE EUKARYOTIC TRANSLATION INITIATION FACTOR 1A (EIF-1A) (EIF-4C)
gb|AAB05664.1| (U28419) translation initiation factor eif-4C homolog [Mus
musculus]
Length = 67
Score = 55.0 bits (130), Expect = 9e-07
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +3
Query: 300 LALPDCQDNKGDVILKYTADEARTLKCYRELAENAEINDTD 422
+ L D QDNK DVILKY DEAR+LK Y EL E+A+IN+ D
Sbjct: 2 IGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMD 42
>sp|O29481|IF1A_ARCFU PUTATIVE TRANSLATION INITIATION FACTOR 1A (EIF-1A)
pir||A69347 translation initiation factor eIF-1A (eif1A) homolog -
Archaeoglobus fulgidus
gb|AAB90469.1| (AE001051) translation initiation factor eIF-1A (eif1A)
[Archaeoglobus fulgidus]
Length = 88
Score = 50.8 bits (119), Expect = 2e-05
Identities = 21/62 (33%), Positives = 39/62 (62%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
G G ++ C +G +RL+ I GKMRKK+WI + D++++ Q ++ D++ +YT +
Sbjct: 20 GAGHIKVRCEDGVERLARIPGKMRKKIWIREGDVVIVVPWSFQKDRADIVWRYTNPQVEW 79
Query: 372 LK 377
L+
Sbjct: 80 LE 81
>sp|O27085|IF1A_METTH PUTATIVE TRANSLATION INITIATION FACTOR 1A (EIF-1A)
pir||H69000 translation initiation factor aIF-1A - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85500.1| (AE000873) translation initiation factor, eIF-1A [Methanobacterium
thermoautotrophicum]
Length = 99
Score = 50.0 bits (117), Expect = 3e-05
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQ-DNKGDVILKYTADEAR 368
G+G L+ C +G RL I GKM+K++WI + D++L+ + Q + K D++ +YT E+
Sbjct: 30 GHGKLKVRCADGHIRLGRIPGKMKKRIWIREGDVVLVKPWEFQSEEKADIVWRYTRTESN 89
Query: 369 TLK 377
L+
Sbjct: 90 WLE 92
>sp|Q03590|IF1A_THEAC PUTATIVE TRANSLATION INITIATION FACTOR 1A (EIF-1A)
pir||S26726 hypothetical protein 125 (rpoA2 3' region) - Thermoplasma
acidophilum
emb|CAA48284.1| (X68198) ORF125 [Thermoplasma acidophilum]
Length = 125
Score = 45.3 bits (105), Expect = 8e-04
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQDNKGDVILKYTADEART 371
G L +C +G R + I G+MRK++WI + D++++ + Q K DV+ + T +A
Sbjct: 45 GASRLSVMCEDGYTRNARIPGRMRKRMWIREKDLVIVKPWEFQPEKADVVYRNTKTQASY 104
Query: 372 LKCYRELAENAEIND 416
L L E +I++
Sbjct: 105 LSRNHMLPEVIDISN 119
>sp|Q57887|IF1A_METJA PUTATIVE TRANSLATION INITIATION FACTOR 1A (EIF-1A)
pir||E64355 translation initiation factor aIF-1A - Methanococcus jannaschii
gb|AAB98435.1| (U67496) translation initiation factor aIF-1A [Methanococcus
jannaschii]
Length = 102
Score = 43.4 bits (100), Expect = 0.003
Identities = 17/54 (31%), Positives = 33/54 (60%), Gaps = 1/54 (1%)
Frame = +3
Query: 216 CFNGSKRLSNIRGKMRKKVWINQSDIILLALPDCQ-DNKGDVILKYTADEARTLK 377
C +G RL I G+++ ++W+ + D++++ + Q D K D+I +YT + LK
Sbjct: 39 CLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQVEWLK 93
>pir||H71034 probable translation initiation factor eIF-1A - Pyrococcus
horikoshii
dbj|BAA30680.1| (AP000006) 116aa long hypothetical translation initiation factor
eIF-1A [Pyrococcus horikoshii]
Length = 116
Score = 43.0 bits (99), Expect = 0.004
Identities = 19/54 (35%), Positives = 33/54 (60%), Gaps = 1/54 (1%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILL-ALPDCQDNKGDVILKYT 353
G G ++ C +G R I GK+R++VWI D++++ P D +GD++ +YT
Sbjct: 36 GAGWMDVRCEDGKIRRCRIPGKLRRRVWIRVGDLVIVQPWPVQSDKRGDIVYRYT 90
>pir||B75179 translation initiation factor aif-1a (aif1a) PAB2441 - Pyrococcus
abyssi (strain Orsay)
emb|CAB49513.1| (AJ248284) translation initiation factor aIF-1A (aif1A) [Pyrococcus
abyssi]
Length = 115
Score = 43.0 bits (99), Expect = 0.004
Identities = 19/54 (35%), Positives = 33/54 (60%), Gaps = 1/54 (1%)
Frame = +3
Query: 192 GNGLLEDLCFNGSKRLSNIRGKMRKKVWINQSDIILL-ALPDCQDNKGDVILKYT 353
G G ++ C +G R I GK+R++VWI D++++ P D +GD++ +YT
Sbjct: 35 GAGWMDVRCEDGKIRRCRIPGKLRRRVWIRVGDLVIVQPWPVQSDKRGDIVYRYT 89
>sp|O82712|RL15_QUESU 60S RIBOSOMAL PROTEIN L15
emb|CAA04690.1| (AJ001346) RPL15 [Quercus suber]
Length = 201
Score = 40.6 bits (93), Expect = 0.019
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Frame = +1
Query: 127 PAPRAHLQGGRSRVRPSNQDASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSSWP 306
PAP+ G +P NQ +++ F R STA ER RR G R++ S W
Sbjct: 74 PAPKGATFG-----KPVNQGINQLKFQRSLRSTAE-------ERVARRCGGLRILNSYWI 121
Query: 307 SQTARTTKAMSFSSTPPMK---PVPSSATASLPRTPRSTIPTAWDRAKMARSTWEG 465
++T T+ S STP + +P S ++ P T + + K R G
Sbjct: 122 TKTVSTSTLKSSLSTPSTRLSVVMPVSTGSATPYTSAENLAVSHPLGKQNRGLGRG 177
>ref|NP_055616.1| KIAA0435 gene product
dbj|BAA23708.1| (AB007895) KIAA0435 [Homo sapiens]
Length = 777
Score = 37.5 bits (85), Expect = 0.17
Identities = 30/116 (25%), Positives = 55/116 (46%), Gaps = 2/116 (1%)
Frame = +1
Query: 187 ASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTPPMKP 366
A ++ S + +ST++++S F +RS + +++S + T SS+ +
Sbjct: 665 AEALIRSSLGSSTSSTLSFLF----GKRSFSSALVISGLSAAEGGNTSDTQSSSSVNIVM 720
Query: 367 VPSSATASLPRTPRSTIPTAWDRAKMARSTWEGGDGGWDEH--CGKWAGFCSGGSVPY 534
PS+ AS ++T W A + R+ W+GG G W E C + FC +P+
Sbjct: 721 GPSARAAS-----QATRVRGW--AGLTRTGWDGGTGSWPERGTCLAFPPFCLQNPIPF 771
>ref|NP_038636.1| nascent polypeptide-associated complex alpha polypeptide
pir||T30826 nascent polypeptide-associated complex alpha chain, muscle splice
form gp220 - mouse
gb|AAB18732.1| (U48363) alpha-NAC, muscle-specific form gp220 [Mus musculus]
gb|AAB18734.1| (U48364) alpha-NAC, muscle-specific form gp220 [Mus musculus]
Length = 2187
Score = 36.0 bits (81), Expect = 0.49
Identities = 35/145 (24%), Positives = 58/145 (39%), Gaps = 7/145 (4%)
Frame = +1
Query: 91 KEPQTWYQGER*PAPRAHLQGGRSRVRPSNQDASEMVFSRICASTAASVSPTFVERCERR 270
K P T E AP +S P+ AS + A A T + C++
Sbjct: 1624 KAPSTTIPKENLAAPAVLPVSSKSPAAPARASAS--LSPATAAPQTAPKEATTIPSCKKA 1681
Query: 271 SGLTRVI-------LSSWPSQTARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTAW 429
+ I L P +T+ T+ + S+PP K S ++LP T T+P+
Sbjct: 1682 AATETPIETSTAPSLEGAPKETSETSVSKVLMSSPPKKASSSKRASTLPAT---TLPSLK 1738
Query: 430 DRAKMARSTWEGGDGGWDEHCGKWAGFCSGGS 525
+ + ++ + G D H + CS G+
Sbjct: 1739 EASVLSPTATSSGK---DSHISPVSDACSTGT 1767
>ref|NP_014652.1| Yor009wp
pir||S61993 probable membrane protein YOR009w - yeast (Saccharomyces
cerevisiae)
gb|AAC49489.1| (U43491) hypothetical protein UNB487 [Saccharomyces cerevisiae]
emb|CAA99197.1| (Z74917) ORF YOR009w [Saccharomyces cerevisiae]
Length = 487
Score = 34.4 bits (77), Expect = 1.4
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +1
Query: 160 SRVRPSNQDASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMS 339
S V PS+ SE+V S + +ST+ + S + V S T + SS S ++ + + +
Sbjct: 246 SSVAPSS---SEVVSSSVASSTSEATSSSAVTSSSAVSSSTESVSSSSVSSSSAVSSSEA 302
Query: 340 FSSTPPMKPVPSSA-TASLPRTP-RSTIPTAWDRAKMARST 456
SS+P V SSA AS P STI ++ A+ + ST
Sbjct: 303 VSSSPVSSVVSSSAGPASSSVAPYNSTIASSSSTAQTSIST 343
>pir||T13160 protein CNK - fruit fly (Drosophila melanogaster)
gb|AAC80557.1| (AF100152) connector enhancer of KSR protein CNK [Drosophila
melanogaster]
gb|AAF57874.1| (AE003803) cnk gene product [Drosophila melanogaster]
Length = 1557
Score = 34.0 bits (76), Expect = 1.9
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 313 TARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTAWDRAKMARSTWEGG----DGGW 480
TA AMS S T P++ +P + SLP+TP I D + R+ + G D G+
Sbjct: 1104 TASQQSAMSSSVTKPLEKLPKIQSVSLPKTPDYEISFKPDDESIKRTRTKEGQKLRDFGY 1163
Query: 481 DEHCG 495
+ CG
Sbjct: 1164 ELICG 1168
>gb|AAF37892.1| (AF238478) histone H3 [Gibberella circinata]
Length = 105
Score = 33.6 bits (75), Expect = 2.5
Identities = 29/88 (32%), Positives = 42/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 163 RVRPSNQDASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSS-WPSQTARTTKAMS 339
R+ S E+ S S S+S F + R S + SS W ++ RT+ +S
Sbjct: 12 RLPASPPHPPEVSRSLTATSLVPSLSVRFDDTRSRLSSSSESSPSSAWSARLPRTSSPIS 71
Query: 340 FSSTPPMKPVPSSATASLPRTPRSTIPTA 426
SS PP V S + +SL +P S IPT+
Sbjct: 72 ASSLPP--SVLSRSLSSLTSSPSSRIPTS 98
>ref|NP_009297.1| v-abl Abelson murine leukemia viral oncogene homolog 1 isoform b
Length = 1148
Score = 33.6 bits (75), Expect = 2.5
Identities = 36/151 (23%), Positives = 58/151 (37%), Gaps = 5/151 (3%)
Frame = +1
Query: 1 ARGSLPRPHYRCPSSTASNKGTIANNSTGWKEPQTWYQGER*PAPRAHLQGGRSRVRPSN 180
A S R H S +KG ++ P PA A GG+ RP
Sbjct: 888 AEESRVRRHKHSSESPGRDKGKLSKLKPAPPPP---------PAASAGKAGGKPSQRPGQ 938
Query: 181 QDASEMVFSRICASTAA--SVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTP 354
+ A E V +T+ +V+ + + GL + +L + P S P
Sbjct: 939 EAAGEAVLGAKTKATSLVDAVNSDAAKPSQPAEGLKKPVLPATPKPHPAKPSGTPISPAP 998
Query: 355 -PMKPVPSSATASLPRTPRST--IPTAWDRAKMARS 453
P+ +PS+++A P ST IP R + ++
Sbjct: 999 VPLSTLPSASSALAGDQPSSTAFIPLISTRVSLRKT 1034
>ref|NP_005148.1| v-abl Abelson murine leukemia viral oncogene homolog 1 isoform a
gb|AAA51561.1| (M14752) abl protein [Homo sapiens]
Length = 1130
Score = 33.6 bits (75), Expect = 2.5
Identities = 36/151 (23%), Positives = 58/151 (37%), Gaps = 5/151 (3%)
Frame = +1
Query: 1 ARGSLPRPHYRCPSSTASNKGTIANNSTGWKEPQTWYQGER*PAPRAHLQGGRSRVRPSN 180
A S R H S +KG ++ P PA A GG+ RP
Sbjct: 870 AEESRVRRHKHSSESPGRDKGKLSKLKPAPPPP---------PAASAGKAGGKPSQRPGQ 920
Query: 181 QDASEMVFSRICASTAA--SVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTP 354
+ A E V +T+ +V+ + + GL + +L + P S P
Sbjct: 921 EAAGEAVLGAKTKATSLVDAVNSDAAKPSQPAEGLKKPVLPATPKPHPAKPSGTPISPAP 980
Query: 355 -PMKPVPSSATASLPRTPRST--IPTAWDRAKMARS 453
P+ +PS+++A P ST IP R + ++
Sbjct: 981 VPLSTLPSASSALAGDQPSSTAFIPLISTRVSLRKT 1016
>ref|NP_031991.1| Ena-vasodilator stimulated phosphoprotein
gb|AAC52862.1| (U72519) ena-VASP like protein [Mus musculus]
Length = 393
Score = 33.2 bits (74), Expect = 3.2
Identities = 22/51 (43%), Positives = 23/51 (44%), Gaps = 1/51 (1%)
Frame = +1
Query: 253 ERCERRSGLTRVILS-SWPSQTARTTKAMSFSSTPPMKPVPSSATASLPRTP 405
E ERR T IL PS A TT + S PP PVP T S P P
Sbjct: 149 ESLERRISATGPILPPGHPSSAASTTLSCSGPPPPPPPPVPPPPTGSTPPPP 200
>gb|AAD47129.1|AF026205_6 (AF026205) T23E7.2a gene product [Caenorhabditis elegans]
Length = 885
Score = 33.2 bits (74), Expect = 3.2
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +1
Query: 178 NQDASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTPP 357
N A E + + A + V PT + + S+ PS+ T K+ + S PP
Sbjct: 276 NPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPP 335
Query: 358 M------KPVP----SSATASLPRTPRSTIPT 423
VP S+A +S+P TP+S +P+
Sbjct: 336 TPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPS 367
>gb|AAB71257.1| (AF026205) T23E7.2a gene product [Caenorhabditis elegans]
Length = 930
Score = 33.2 bits (74), Expect = 3.2
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +1
Query: 178 NQDASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTPP 357
N A E + + A + V PT + + S+ PS+ T K+ + S PP
Sbjct: 276 NPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPP 335
Query: 358 M------KPVP----SSATASLPRTPRSTIPT 423
VP S+A +S+P TP+S +P+
Sbjct: 336 TPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPS 367
>gb|AAB71258.1| (AF026205) T23E7.2a gene product [Caenorhabditis elegans]
Length = 880
Score = 33.2 bits (74), Expect = 3.2
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +1
Query: 178 NQDASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTPP 357
N A E + + A + V PT + + S+ PS+ T K+ + S PP
Sbjct: 226 NPTADEEPAAELEADAGSEVPPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPP 285
Query: 358 M------KPVP----SSATASLPRTPRSTIPT 423
VP S+A +S+P TP+S +P+
Sbjct: 286 TPKSAAPSEVPLTPKSAAQSSVPPTPKSAVPS 317
>gb|AAC98529.1| (U18246) RNA-dependent RNA polymerase [Helicoverpa armigera stunt
virus]
prf||2113432A replicase [Helicoverpa armigera stunt virus]
Length = 1704
Score = 32.8 bits (73), Expect = 4.2
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Frame = +1
Query: 88 WKEPQTWYQGER*P---APRAHLQGGRSRVRPSNQDASEMVFSRICASTAASVSPTFVER 258
WK Q W +R + + Q +SR + E S + A TA S S +F ER
Sbjct: 1463 WKVAQWWRHRKRTEDLNSRKPPSQDRQSRSSECLDRSGERTGSSLTAPTAPSPSFSFSER 1522
Query: 259 CERRSGLTRVILSSWPSQTARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTAWDRA 438
+G T +S + + T ++ +TP P S +A P TA +
Sbjct: 1523 ARLATGPTVAAATSPSATPSCATDQVAARTTPDFAPFLGSQSARAVSKPYRPPTTARWKE 1582
Query: 439 KMARSTWEGGDG 474
W+G G
Sbjct: 1583 VTPLHAWKGVTG 1594
>emb|CAA81388.1| (Z26645) verprolin [Saccharomyces cerevisiae]
Length = 751
Score = 32.5 bits (72), Expect = 5.6
Identities = 31/127 (24%), Positives = 51/127 (39%)
Frame = +1
Query: 40 SSTASNKGTIANNSTGWKEPQTWYQGER*PAPRAHLQGGRSRVRPSNQDASEMVFSRICA 219
SS + + GT+++ P G P L GG +++ N +AS ++
Sbjct: 63 SSASGSSGTVSSKGPSMSAPPIPGMGA--PQLGDILAGGIPKLKHINNNAS----TKPSP 116
Query: 220 STAASVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTPPMKPVPSSATASLPR 399
S +A P V + + + P A ++ SS PP+ +PSSA +P
Sbjct: 117 SASAPPIPGAVP------SVAAPPIPNAPLSPAPAVPSIPSSSAPPIPDIPSSAAPPIPI 170
Query: 400 TPRSTIP 420
P S P
Sbjct: 171 VPSSPAP 177
>emb|CAA57031.1| (X81123) unnamed protein product [Escherichia coli]
Length = 395
Score = 32.5 bits (72), Expect = 5.6
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 343 SSTPPMKPVP-SSATASLPRTPRSTIPTAWDRAKMARSTWEGGDGGWDEHCGKWAGFCSG 519
+S P ++P P + P PR P R +M RS G GG G+ G
Sbjct: 111 TSVPAIQPAPVTQPVRPQPTGPREKTPYELARERMLRSGLTAGSGG-----GEDLPRPQG 165
Query: 520 GSVPY--LCPGKGGWGAVVFNYQP 585
G VP L G GG G + QP
Sbjct: 166 GDVPAGGLMGGGGGGGELAEKLQP 189
>ref|NP_013441.1| Proline-rich protein verprolin; Vrp1p
sp|P37370|VRP1_YEAST VERPROLIN
pir||S51342 verprolin - yeast (Saccharomyces cerevisiae)
gb|AAB67263.1| (U19028) Vrp1p [Saccharomyces cerevisiae]
prf||2201477A MDP2 gene [Saccharomyces cerevisiae]
Length = 817
Score = 32.5 bits (72), Expect = 5.6
Identities = 31/127 (24%), Positives = 51/127 (39%)
Frame = +1
Query: 40 SSTASNKGTIANNSTGWKEPQTWYQGER*PAPRAHLQGGRSRVRPSNQDASEMVFSRICA 219
SS + + GT+++ P G P L GG +++ N +AS ++
Sbjct: 63 SSASGSSGTVSSKGPSMSAPPIPGMGA--PQLGDILAGGIPKLKHINNNAS----TKPSP 116
Query: 220 STAASVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTPPMKPVPSSATASLPR 399
S +A P V + + + P A ++ SS PP+ +PSSA +P
Sbjct: 117 SASAPPIPGAVP------SVAAPPIPNAPLSPAPAVPSIPSSSAPPIPDIPSSAAPPIPI 170
Query: 400 TPRSTIP 420
P S P
Sbjct: 171 VPSSPAP 177
>pir||T18535 high molecular mass nuclear antigen - chicken (fragment)
dbj|BAA24137.1| (D88440) high molecular mass nuclear antigen [Gallus gallus]
Length = 1151
Score = 32.5 bits (72), Expect = 5.6
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 2/67 (2%)
Frame = +1
Query: 226 AASVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTPPMKPVPSSA--TASLPR 399
AA V+P ++ R+ T P Q T A + ++TPP +P+P +A T + P
Sbjct: 421 AAPVTPPSPQQAVPRAA-TAAAAPVTPQQPV-TKAATTTNATPPPQPIPKAATTTTATPV 478
Query: 400 TPRSTIPTA 426
TP+ IP A
Sbjct: 479 TPQQPIPKA 487
>gb|AAC31918.1| (AF079447) myosin heavy chain kinase C [Dictyostelium discoideum]
Length = 751
Score = 32.1 bits (71), Expect = 7.3
Identities = 21/43 (48%), Positives = 28/43 (64%), Gaps = 7/43 (16%)
Frame = +1
Query: 295 SSWPSQTARTTKA------MSFSSTPPMKPV-PSSATASLPRTPRSTIPT 423
SS S ++ TT A +S +S PP +P+ PSSA AS T S +PT
Sbjct: 428 SSSSSSSSSTTNAAPISIQVSRNSPPPQQPIQPSSAAASASSTSSSNVPT 477
>pir||S24169 mucin - rat
Length = 292
Score = 31.7 bits (70), Expect = 9.5
Identities = 16/44 (36%), Positives = 23/44 (51%)
Frame = +1
Query: 292 LSSWPSQTARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPT 423
+S S T+ TT++ S +ST P P+ T T ST+PT
Sbjct: 56 ISETASSTSPTTESTSSTSTTSQTPTPTPTTIKETPTSTSTVPT 99
>dbj|BAA89659.1| (D10032) gag-pol precursor polyprotein [Baboon endogenous virus
strain M7]
Length = 1727
Score = 31.7 bits (70), Expect = 9.5
Identities = 19/56 (33%), Positives = 26/56 (45%)
Frame = +1
Query: 313 TARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTAWDRAKMARSTWEGGDGGW 480
+A T ++ SSTPP P P T PRTP T R ++ R+ + G W
Sbjct: 174 SAPTPSSLVSSSTPPSSPAPPELT---PRTPPQT-----PRLRLRRAEGQDGPSTW 221
>pir||S53363 mucin 5AC (clone JER58) - human (fragment)
emb|CAA84032.1| (Z34278) mucin [Homo sapiens]
Length = 279
Score = 31.7 bits (70), Expect = 9.5
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 313 TARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTAWDRAKMARSTWEG 465
+A TT S T P +PVP+++T S P T ++ PT + ST G
Sbjct: 42 SAATTSTTSGPETTP-RPVPTTSTTSSPTTSTTSAPTTSTTSASTTSTTSG 91
>pir||A71558 probable low calcium response E - Chlamydia trachomatis (serotype
D, strain UW3/Cx)
gb|AAC67680.1| (AE001283) Low Calcium Response E [Chlamydia trachomatis]
Length = 421
Score = 31.7 bits (70), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1
Query: 337 SFSSTPPMKPVPSSATASLPRTPRSTIP 420
SFSSTPP PVP S +P +P ST P
Sbjct: 394 SFSSTPPHAPVPQS---EIPTSPTSTQP 418
>emb|CAA76017.1| (Y16065) a6 [Drosophila melanogaster]
emb|CAA76018.1| (Y16066) a6 protein [Drosophila melanogaster]
emb|CAA19836.1| (AL031025) EG:9D2.3 [Drosophila melanogaster]
Length = 409
Score = 31.7 bits (70), Expect = 9.5
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 19/63 (30%)
Frame = +1
Query: 304 PSQTARTTKAMSFSSTPPMKPVPSSAT------ASLPRTPRSTIPTAWDR---------- 435
PS TAR +S S PP+ P+ S T + +PRT ST R
Sbjct: 143 PSSTARVRSQLSMRSPPPLAPLTQSETIEEVTVSLVPRT--STTANCLTRVSGHPKPCRA 200
Query: 436 ---AKMARSTWEGGDGGWDEHC 492
A +T EGG+GG + C
Sbjct: 201 STAASNGFATAEGGEGGNETGC 222
>pir||T06150 hypothetical protein F24J7.130 - Arabidopsis thaliana
emb|CAA16934.1| (AL021768) putative protein [Arabidopsis thaliana]
emb|CAB78959.1| (AL161551) putative protein [Arabidopsis thaliana]
Length = 539
Score = 31.7 bits (70), Expect = 9.5
Identities = 19/53 (35%), Positives = 24/53 (44%)
Frame = +1
Query: 262 ERRSGLTRVILSSWPSQTARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIP 420
+R SG+ + SS P T A S+ TPP +P P R PR IP
Sbjct: 137 QRTSGMQKPKRSSTPKPTESDKPASSYGPTPPPEPRPK-------RRPRPNIP 182
>sp|P55046|TYRT_STRAL TYROSINASE CO-FACTOR
emb|CAA65004.1| (X95705) Tyrosinase co-factor (MelC2) [Streptomyces galbus]
Length = 126
Score = 31.7 bits (70), Expect = 9.5
Identities = 26/90 (28%), Positives = 37/90 (40%), Gaps = 3/90 (3%)
Frame = +1
Query: 316 ARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTAWDRAKMARSTWEG---GDGGWDE 486
A TT A ++ P + A + R T P ++D R G G G E
Sbjct: 9 AYTTAAAVAATASAAAPTAAPAATAAARHDH-TAPDSFDEVYKGRRIQGGPASGGGHHHE 67
Query: 487 HCGKWAGFCSGGSVPYLCPGKGGWGAVVFNYQP 585
H G +A F G + + G W +VV +Y P
Sbjct: 68 HGGGYAVFVDGVQLHVMQNADGTWISVVSHYAP 100
>dbj|BAA91376.1| (AK000783) unnamed protein product [Homo sapiens]
Length = 342
Score = 31.7 bits (70), Expect = 9.5
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = +1
Query: 127 PAPRAHLQGGRSRVRPSNQDASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSSWP 306
PA Q S + E++ S S ++SP+ + R +S
Sbjct: 115 PACNGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEG 174
Query: 307 SQTARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTA 426
S+ + ++ +S PP +P P ATAS PR IP++
Sbjct: 175 SEQPKKRASIQRTSAPPSRPPPPRATAS-PRPSSGNIPSS 213
>emb|CAB88499.1| (AL353817) conserved hypothetical protein [Neurospora crassa]
Length = 440
Score = 31.7 bits (70), Expect = 9.5
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 208 RICASTAASVSPTFVERCERRSGLTRVILSSWPSQTARTTKAMSFSSTP-PMKPVPSSAT 384
R CA +A++SPT V RS + P R + +F+ TP P +P +
Sbjct: 39 RTCACLSAALSPTAVTSQASRSIIHDNPTFQQPRAYRRCVASPTFTPTPTPWRPTTT--- 95
Query: 385 ASLPRTPRSTIPTAWDRAKMARSTW 459
R P T P W + + + S W
Sbjct: 96 ----RLPPITGPPPWAQQRRSASDW 116
>gb|AAF45661.1| (AE003421) a6 gene product [Drosophila melanogaster]
Length = 417
Score = 31.7 bits (70), Expect = 9.5
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 19/63 (30%)
Frame = +1
Query: 304 PSQTARTTKAMSFSSTPPMKPVPSSAT------ASLPRTPRSTIPTAWDR---------- 435
PS TAR +S S PP+ P+ S T + +PRT ST R
Sbjct: 143 PSSTARVRSQLSMRSPPPLAPLTQSETIEEVTVSLVPRT--STTANCLTRVSGHPKPCRA 200
Query: 436 ---AKMARSTWEGGDGGWDEHC 492
A +T EGG+GG + C
Sbjct: 201 STAASNGFATAEGGEGGNETGC 222
>emb|CAA64402.1| (X94917) head-elevated expression in 0.9 kb [Drosophila
melanogaster]
Length = 223
Score = 31.7 bits (70), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +3
Query: 306 LPDCQDNKGDVILKYTADEARTLKCYRELAE 398
+P CQD K ++ Y A TLKC E+A+
Sbjct: 160 VPPCQDLKSQLLACYRAHPGETLKCMEEVAQ 190
>ref|NP_057271.1| bridging integrator 2
gb|AAD54227.1|AF146531_1 (AF146531) bridging integrator-2 [Homo sapiens]
Length = 564
Score = 31.7 bits (70), Expect = 9.5
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = +1
Query: 127 PAPRAHLQGGRSRVRPSNQDASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSSWP 306
PA Q S + E++ S S ++SP+ + R +S
Sbjct: 337 PACNGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEG 396
Query: 307 SQTARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTA 426
S+ + ++ +S PP +P P ATAS PR IP++
Sbjct: 397 SEQPKKRASIQRTSAPPSRPPPPRATAS-PRPSSGNIPSS 435
>gb|AAF57107.1| (AE003776) l(3)03670 gene product [Drosophila melanogaster]
Length = 223
Score = 31.7 bits (70), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +3
Query: 306 LPDCQDNKGDVILKYTADEARTLKCYRELAE 398
+P CQD K ++ Y A TLKC E+A+
Sbjct: 160 VPPCQDLKSQLLACYRAHPGETLKCIEEVAQ 190
>gb|AAC48897.1| (U64984) unknown [Bacteriophage Mx8]
Length = 264
Score = 31.7 bits (70), Expect = 9.5
Identities = 38/125 (30%), Positives = 46/125 (36%), Gaps = 26/125 (20%)
Frame = +1
Query: 118 ER*PAPRAHLQGGRSRVRPSNQDAS--------EMVFSRIC-------ASTAASVSPTFV 252
E P HL R R RP E V + C A+ V P V
Sbjct: 100 EHRPDVAGHLSRVRPRARPEQVHPRLSRLRWLPEFVAAVACGLLLWPQATVDVRVPPQVV 159
Query: 253 ERCERRSGLTRVILSSWPSQTARTTKAMSFSSTP-----------PMKPVPSSATASLPR 399
ER ++ V L QT T M FSST P +P+P T P+
Sbjct: 160 ER------VSHVALPEGTPQTVWMTDVMRFSSTKSESWSVGRVRVPDRPLPGQDTPPCPK 213
Query: 400 TPRSTIPTAWDRAKMARSTWEGGDGGWDEHC 492
+ W K G WD C
Sbjct: 214 GYQVINGGCWAELKQKAPNCPRGSAEWDGGC 244
>ref|NP_057377.1| breast cancer associated protein BRAP1
dbj|BAA88108.1| (AB032698) breast cancer associated protein BRAP1 [Homo sapiens]
dbj|BAA88125.1| (AB032710) breast cancer associated protein BRAP1 [Homo sapiens]
Length = 565
Score = 31.7 bits (70), Expect = 9.5
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = +1
Query: 127 PAPRAHLQGGRSRVRPSNQDASEMVFSRICASTAASVSPTFVERCERRSGLTRVILSSWP 306
PA Q S + E++ S S ++SP+ + R +S
Sbjct: 338 PACNGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEG 397
Query: 307 SQTARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTA 426
S+ + ++ +S PP +P P ATAS PR IP++
Sbjct: 398 SEQPKKRASIQRTSAPPSRPPPPRATAS-PRPSSGNIPSS 436
>sp|P03341|GAG_BAEVM GAG POLYPROTEIN [CONTAINS: INNER COAT PROTEIN P12; CORE PROTEIN
P15; CORE SHELL PROTEIN P30; NUCLEOPROTEIN P10]
pir||FOMVM7 gag polyprotein - baboon endogenous virus (strain M7)
emb|CAA29027.1| (X05470) gag gene product (AA 1-537) [Baboon endogenous virus
strain M7]
dbj|BAA00923.1| (D10032) polyprotein [Baboon endogenous virus strain M7]
gb|AAA87331.1| (M16550) gag polyprotein [Baboon endogenous virus strain M7]
Length = 537
Score = 31.7 bits (70), Expect = 9.5
Identities = 19/56 (33%), Positives = 26/56 (45%)
Frame = +1
Query: 313 TARTTKAMSFSSTPPMKPVPSSATASLPRTPRSTIPTAWDRAKMARSTWEGGDGGW 480
+A T ++ SSTPP P P T PRTP T R ++ R+ + G W
Sbjct: 174 SAPTPSSLVSSSTPPSSPAPPELT---PRTPPQT-----PRLRLRRAEGQDGPSTW 221
Database: nr
Posted date: Jun 11, 2000 9:46 PM
Number of letters in database: 159,777,284
Number of sequences in database: 509,459
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233624204
Number of Sequences: 509459
Number of extensions: 4657380
Number of successful extensions: 20961
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 20871
Number of HSP's gapped (non-prelim): 114
length of query: 280
length of database: 159,777,284
effective HSP length: 55
effective length of query: 224
effective length of database: 131,757,039
effective search space: 29513576736
effective search space used: 29513576736
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)