Score E
Sequences producing significant alignments: (bits) Value
ref|NP_015321.1| Ypl004cp >gi|1077261|pir||S52527 hypotheti... 263 2e-69
ref|NP_011600.1| Ygr086cp >gi|1723685|sp|P53252|YG2J_YEAST ... 259 3e-68
pir||T41572 hypothetical protein SPCC736.15 - fission yeast... 229 3e-59
pir||T38688 hypothetical protein SPAC3C7.02c - fission yeas... 192 5e-48
pir||T39391 meu14. RING zinc finger - fission yeast (Schizo... 107 1e-22
sp|O46409|APA4_PIG APOLIPOPROTEIN A-IV PRECURSOR (APO-AIV) ... 39 0.060
sp|P78716|DYHC_FUSSO DYNEIN HEAVY CHAIN, CYTOSOLIC (DYHC) >... 39 0.060
pir||JE0229 major allergen Tur c1 - Turbo cornutus 36 0.40
emb|CAA06530.1| (AJ005424) BMK1/ERK5 [Rattus norvegicus] 36 0.52
sp|Q10973|YT27_MYCTU HYPOTHETICAL 27.0 KDA PROTEIN RV2927C ... 36 0.69
gb|AAF49873.1| (AE003540) CG10948 gene product [Drosophila ... 35 1.2
dbj|BAA86438.1| (AB032950) KIAA1124 protein [Homo sapiens] 34 1.5
gb|AAA91763.1| (L35239) cardiac tropomyosin [Xenopus laevis] 34 1.5
ref|NP_006026.1| CDC42-binding protein kinase beta (DMPK-li... 34 1.5
gb|AAA91764.1| (L35238) non-muscle tropomyosin [Xenopus lae... 34 1.5
emb|CAA19194.1| (AL023635) hypothetical protein MLCB1243.13... 34 1.5
gb|AAF51405.1| (AE003587) CG5080 gene product [alt 1] [Dros... 34 2.0
emb|CAB60910.1| (AL132896) predicted using Genefinder; prel... 34 2.7
gb|AAC08530.1| (AF046924) mucin [Anopheles gambiae] 34 2.7
emb|CAA38179.1| (X54277) cardiac tropomyosin [Coturnix cotu... 34 2.7
sp|Q10221|YAYE_SCHPO HYPOTHETICAL 39.8 KD PROTEIN C4H3.14C ... 34 2.7
pir||I78843 receptor protein-tyrosine kinase - human (fragm... 33 3.5
emb|CAA38180.1| (X54278) cytoskeletal tropomyosin [Coturnix... 33 3.5
sp|P54756|EPA5_HUMAN EPHRIN TYPE-A RECEPTOR 5 PRECURSOR (TY... 33 3.5
ref|NP_031963.1| Eph receptor A5 >gi|2497571|sp|Q60629|EPA5... 33 4.5
sp|P45444|DYHC_EMENI DYNEIN HEAVY CHAIN, CYTOSOLIC (DYHC) >... 33 4.5
gb|AAC45105.1| (U68012) primary sigma factor [Borrelia gari... 33 4.5
gb|AAC45098.1| (U68015) primary sigma factor [Borrelia afze... 33 4.5
gb|AAC45106.1| (U68013) primary sigma factor [Borrelia gari... 33 4.5
gb|AAC45101.1| (U68005) primary sigma factor [Borrelia gari... 33 4.5
gb|AAC45097.1| (U68010) primary sigma factor [Borrelia afze... 33 4.5
gb|AAC45103.1| (U68008) primary sigma factor [Borrelia gari... 33 4.5
gb|AAC45104.1| (U68011) primary sigma factor [Borrelia gari... 33 4.5
ref|NP_035971.1| mitogen-activated protein kinase 7 >gi|536... 33 4.5
pir||A44131 tropomyosin beta 2 - mouse >gi|192157|gb|AAA372... 33 4.5
pir||S51604 receptor-like tyrosine kinase Ehk-1 - rat 32 6.0
ref|NP_038490.1| adrenergic receptor, beta 3 >gi|6180060|gb... 32 6.0
sp|P25962|B3AR_MOUSE BETA-3 ADRENERGIC RECEPTOR >gi|485484|... 32 6.0
emb|CAA42966.1| (X60438) beta-3-adrenergic-receptor [Mus mu... 32 6.0
pir||S51603 receptor-like tyrosine kinase Ehk-1 - rat 32 6.0
gb|AAC45100.1| (U68006) primary sigma factor [Borrelia burg... 32 6.0
sp|P54757|EPA5_RAT EPHRIN TYPE-A RECEPTOR 5 PRECURSOR (TYRO... 32 6.0
pir||S47489 receptor tyrosine kinase - rat >gi|531544|emb|C... 32 6.0
sp|P52323|RPSD_BORBU RNA POLYMERASE SIGMA FACTOR RPOD (SIGM... 32 6.0
dbj|BAB06206.1| (AP001515) chromosome segregation SMC prote... 32 6.0
ref|NP_036810.1| tropomycin 4 >gi|136081|sp|P09495|TPM4_RAT... 32 6.0
pir||JC4613 primary sigma factor - Lyme disease spirochete ... 32 6.0
gb|AAC40745.1| (AF037218) very large tegument protein [Huma... 32 7.8
ref|NP_043785.1| large tegument protein >gi|1729894|sp|P523... 32 7.8
pir||S66308 substrate-inducible nitrate reductase 2 - soybe... 32 7.8
sp|P39870|NIA2_SOYBN INDUCIBLE NITRATE REDUCTASE 2 (NR) >gi... 32 7.8
emb|CAB60918.1| (AL132896) predicted using Genefinder; prel... 32 7.8
gb|AAC64112.1| (AF089737) M protein [Streptococcus pyogenes] 32 7.8
pir||S74486 hypothetical protein sll1061 - Synechocystis sp... 32 7.8
>ref|NP_015321.1| Ypl004cp
pir||S52527 hypothetical protein YPL004c - yeast (Saccharomyces cerevisiae)
emb|CAA88382.1| (Z48483) unknown [Saccharomyces cerevisiae]
gb|AAB68101.1| (U33335) Lpa13p [Saccharomyces cerevisiae]
emb|CAA95037.1| (Z71255) unknown [Saccharomyces cerevisiae]
Length = 341
Score = 263 bits (664), Expect = 2e-69
Identities = 131/173 (75%), Positives = 149/173 (85%)
Frame = +2
Query: 83 TCQLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKE 262
T +LGVL+YE+GEL+DQ++D+YDQYRVT+KSIRNIEASVQPSRDRK+KITD+IA LKYK+
Sbjct: 101 TDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKD 160
Query: 263 PQSPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYG 442
PQS KI VLEQELVRAEAESLVAEAQLSNITREK+KAAY+Y FD+LRE EK A+IAGYG
Sbjct: 161 PQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYG 220
Query: 443 KHLLELIDDTPVTPGETRQAYDGYEASKAIIQDCEDALTSWVSSNAVVSSKLS 601
K LLEL+DD+PVTPGE R AYDGYEAS+ II D E AL SW A V LS
Sbjct: 221 KALLELLDDSPVTPGEARPAYDGYEASRQIIMDAESALESWTLDMAAVKPTLS 273
>ref|NP_011600.1| Ygr086cp
sp|P53252|YG2J_YEAST HYPOTHETICAL 38.3 KD PROTEIN IN RPL11B-PDC6 INTERGENIC REGION
pir||S64381 hypothetical protein YGR086c - yeast (Saccharomyces cerevisiae)
emb|CAA97088.1| (Z72871) ORF YGR086c [Saccharomyces cerevisiae]
Length = 339
Score = 259 bits (654), Expect = 3e-68
Identities = 127/173 (73%), Positives = 148/173 (85%)
Frame = +2
Query: 83 TCQLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKE 262
T +LGVL+YE+ EL+DQ++DRYDQYR+T+KSIR+IE SVQPSRDRK KITD+IA LKYK+
Sbjct: 101 TDKLGVLIYEVSELDDQFIDRYDQYRLTLKSIRDIEGSVQPSRDRKDKITDKIAYLKYKD 160
Query: 263 PQSPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYG 442
PQSPKI VLEQELVRAEAESLVAEAQLSNITR K++AA+ YQFD++ EH EK+A+IAGYG
Sbjct: 161 PQSPKIEVLEQELVRAEAESLVAEAQLSNITRSKLRAAFNYQFDSIIEHSEKIALIAGYG 220
Query: 443 KHLLELIDDTPVTPGETRQAYDGYEASKAIIQDCEDALTSWVSSNAVVSSKLS 601
K LLEL+DD+PVTPGETR AYDGYEASK II D E AL W +A V LS
Sbjct: 221 KALLELLDDSPVTPGETRPAYDGYEASKQIIIDAESALNEWTLDSAQVKPTLS 273
>pir||T41572 hypothetical protein SPCC736.15 - fission yeast
(Schizosaccharomyces pombe)
emb|CAA19279.1| (AL023705) hypothetical protein [Schizosaccharomyces pombe]
Length = 351
Score = 229 bits (578), Expect = 3e-59
Identities = 111/169 (65%), Positives = 135/169 (79%)
Frame = +2
Query: 83 TCQLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKE 262
T +LGVL YE+ ELE+ +DRYDQYR+T+KSIRNIE+SVQPSR++KQK+ DQI LK+K+
Sbjct: 101 TDKLGVLFYEMAELENYLIDRYDQYRMTLKSIRNIESSVQPSREKKQKLLDQIYALKHKD 160
Query: 263 PQSPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYG 442
P+SP++V +EQELVR EA LVAEAQLSN TREK K A T+ DAL EH EK+ +IA YG
Sbjct: 161 PESPRLVTMEQELVREEAACLVAEAQLSNTTREKFKQAMTFNLDALHEHAEKLNLIATYG 220
Query: 443 KHLLELIDDTPVTPGETRQAYDGYEASKAIIQDCEDALTSWVSSNAVVS 589
+HLL LIDDTPVTPGE R AYDGYE S+ I+ D E AL+SWV S V+
Sbjct: 221 RHLLNLIDDTPVTPGEARPAYDGYETSRQIVMDAEHALSSWVPSQPAVN 269
>pir||T38688 hypothetical protein SPAC3C7.02c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB16733.1| (Z99568) hypothetical protein. [Schizosaccharomyces pombe]
Length = 383
Score = 192 bits (482), Expect = 5e-48
Identities = 90/159 (56%), Positives = 121/159 (75%)
Frame = +2
Query: 89 QLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQ 268
+LGVL+YEIGELE+ VDRYDQYRV++K+IR+IEASVQP+R +K+K+ + I ++ ++P+
Sbjct: 102 KLGVLLYEIGELEEHMVDRYDQYRVSLKTIRDIEASVQPTRVKKEKLLNSIYDVRSRDPE 161
Query: 269 SPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKH 448
SPK++ +EQELVR EA LVAEAQL+NITRE K A+T L EH EKVAI+ GY K
Sbjct: 162 SPKLITMEQELVREEAACLVAEAQLTNITRENFKRAFTLHIGTLLEHSEKVAILCGYAKK 221
Query: 449 LLELIDDTPVTPGETRQAYDGYEASKAIIQDCEDALTSW 565
+L+L+DDTP+ PGE R YDGY ++ I + E L +W
Sbjct: 222 ILDLLDDTPIVPGEPRPIYDGYNITRDYIVEAERELANW 260
>pir||T39391 meu14. RING zinc finger - fission yeast (Schizosaccharomyces pombe)
emb|CAB37434.1| (AL035548) meu14. RING zinc finger [Schizosaccharomyces pombe]
Length = 335
Score = 107 bits (265), Expect = 1e-22
Identities = 56/156 (35%), Positives = 95/156 (60%)
Frame = +2
Query: 89 QLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQ 268
++GVLV E+GE E ++V +++ R+ K+IR +E S+ PSR +Q++ I + + ++P
Sbjct: 92 KIGVLVSELGETEIEFVKAFNENRIKFKAIRAMEDSIAPSRAHRQRLISSIEREEERDPL 151
Query: 269 SPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKH 448
SPK+ L+ +LVR EAE+LV E QL N +RE K+++ DA + +K ++ Y
Sbjct: 152 SPKLTDLQNQLVRTEAENLVGEMQLDNTSREVFKSSFQGLMDAFQLRAQKQMTLSYYASQ 211
Query: 449 LLELIDDTPVTPGETRQAYDGYEASKAIIQDCEDAL 556
L ELI+D PG+ AY A++ I+ C +++
Sbjct: 212 LAELINDEVAYPGDNPAAYSQKYATQ-IMHQCVESM 246
>sp|O46409|APA4_PIG APOLIPOPROTEIN A-IV PRECURSOR (APO-AIV)
emb|CAA11020.1| (AJ222966) apolipoprotein A-IV [Sus scrofa]
Length = 382
Score = 39.1 bits (89), Expect = 0.060
Identities = 57/169 (33%), Positives = 78/169 (45%), Gaps = 32/169 (18%)
Frame = +2
Query: 44 DIIYPLPVLAGPFT----CQLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSR 211
D + L GPFT Q+ V ++ Y +R + V ++IRN+EASV P
Sbjct: 126 DNVRELQQRLGPFTGGLRTQVNTQVQQLQRQLKPYAERMES--VLRQNIRNLEASVAPYA 183
Query: 212 DR-KQKITDQIAQLK-----YKEPQSPKIVVLEQELVRAEA-----------ESLVAEAQ 340
D K KI + +LK Y E KI +EL R+ A L A
Sbjct: 184 DEFKAKIDQNVEELKGSLTPYAEELKAKIDQNVEELRRSLAPYAQDVQEKLNHQLEGLAF 243
Query: 341 LSNITREKVKAAYTYQFDALREHCEKVA---------IIAGYGKHLLELIDDTPVTPGET 493
E++KA + D LR+ VA G K LLEL E
Sbjct: 244 QMKKQAEELKAKISANADELRQKLVPVAENVHGHLKGNTEGLQKSLLELRSHLDQQVEEF 303
Query: 494 RQAYDGY--EASKAIIQDCED 550
R + Y +KA++Q ED
Sbjct: 304 RLKVEPYGETFNKALVQQVED 324
>sp|P78716|DYHC_FUSSO DYNEIN HEAVY CHAIN, CYTOSOLIC (DYHC)
gb|AAC33176.1| (U84215) cytoplasmic dynein heavy chain [Nectria haematococca var.
brevicona]
Length = 4349
Score = 39.1 bits (89), Expect = 0.060
Identities = 29/104 (27%), Positives = 57/104 (53%), Gaps = 8/104 (7%)
Frame = +2
Query: 89 QLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSR-------DRKQKITDQIAQ 247
++G L E+ +LEDQ ++ Q + +I ++EAS+ + Q I ++++
Sbjct: 3418 RVGPLKIEVEQLEDQALETKAQAKSVQNNIADLEASINTYKTEYAALISETQAIKAEMSR 3477
Query: 248 LKYKEPQSPKIV-VLEQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDAL 400
+++K +S +++ L E VR EA S E Q+S + + + AA + L
Sbjct: 3478 VQFKVDRSVRLLDSLSSERVRWEAGSKSFEIQISTLVGDVLVAAAFLAYSGL 3529
>pir||JE0229 major allergen Tur c1 - Turbo cornutus
Length = 146
Score = 36.4 bits (82), Expect = 0.40
Identities = 26/116 (22%), Positives = 58/116 (49%), Gaps = 2/116 (1%)
Frame = +2
Query: 122 LEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQL-KY-KEPQSPKIVVLEQ 295
LE+ + + +Q + + I +E ++ + +R Q T+++ + KY E K+ + E
Sbjct: 4 LENDFDNVNEQLQDALSKITLLEEDLERNEERLQTATERLEEASKYIAEDAERKLAITEV 63
Query: 296 ELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+L RAEA AEA+ I+ ++ + +R+ +++ ++ K + L D+
Sbjct: 64 DLERAEARLEAAEAKSLEISEQEASQREDSYEETIRDLTQRLKTVSKLQKEVDRLEDE 121
>emb|CAA06530.1| (AJ005424) BMK1/ERK5 [Rattus norvegicus]
Length = 344
Score = 36.0 bits (81), Expect = 0.52
Identities = 14/26 (53%), Positives = 19/26 (72%)
Frame = +3
Query: 528 PLSKTVRMLSPAGSLPMPSFLPSCPP 605
P+S+T L PAGS+P P+ P+CPP
Sbjct: 143 PVSQTTAPLQPAGSIPGPASQPACPP 168
>sp|Q10973|YT27_MYCTU HYPOTHETICAL 27.0 KDA PROTEIN RV2927C
pir||G70748 hypothetical protein Rv2927c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA98984.1| (Z74697) hypothetical protein Rv2927c [Mycobacterium tuberculosis]
Length = 245
Score = 35.6 bits (80), Expect = 0.69
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 449 LLELIDDTP-VTPGETRQAYDGYEASKAIIQDCEDALTSWVSSNAVVSSKLSTRARTLSQ 625
+LELIDD PGE A D +A +++QD + S VSS + + ART +
Sbjct: 34 VLELIDDIKDAIPGELDDAQDVLDARDSMLQDAKTHADSMVSSATTEAESILNHARTEAD 93
Query: 626 RRRNNIRTRGE 658
R ++ + + +
Sbjct: 94 RILSDAKAQAD 104
>gb|AAF49873.1| (AE003540) CG10948 gene product [Drosophila melanogaster]
Length = 797
Score = 34.8 bits (78), Expect = 1.2
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 86 CQLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLK 253
CQL + +E+ YV R Q +V ++IRN++ + ++ R+QK I QL+
Sbjct: 514 CQLEAIRHEMTLERSDYVQREKQIKVLQETIRNMQTQLLQTKLREQKDNKTIEQLE 569
>dbj|BAA86438.1| (AB032950) KIAA1124 protein [Homo sapiens]
Length = 1323
Score = 34.4 bits (77), Expect = 1.5
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 140 DRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYK-EPQSPKIVVLEQELVRAEA 316
D + Q ++ ++ + + R +KQK++ Q+ + + E + K+ + QE+ RAE
Sbjct: 160 DAHQQRKLALQEFSELNERMAELRAQKQKVSRQLRDKEEEMEVATQKVDAMRQEMRRAEK 219
Query: 317 ESLVAEAQLSNITREKVKAAYTYQFDALREHCE 415
EAQL + E K LREH E
Sbjct: 220 LRKELEAQLDDAVAEASKER------KLREHSE 246
>gb|AAA91763.1| (L35239) cardiac tropomyosin [Xenopus laevis]
Length = 284
Score = 34.4 bits (77), Expect = 1.5
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = +2
Query: 167 MKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEAQLS 346
MK +E ++ KQ D A KY+E + K+V+LE EL RAE + V+E + S
Sbjct: 135 MKDEEKMEIQEMQLKEAKQIAED--ADRKYEEV-ARKLVILEGELERAEERAEVSELKCS 191
Query: 347 NITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDDTPVTPGETRQAYDGYEASK 526
++ E T +L EK + + ++++ D + ETR + +K
Sbjct: 192 DLEEELKNV--TNNLKSLEAQSEKYSEKEDKYEEEIKILTD-KLKEAETRAEFAERTVAK 248
Query: 527 --AIIQDCEDALTSWVSSNAVVSSKL 598
I D ED L + +S +L
Sbjct: 249 LEKSIDDLEDELYAQKLKYKAISEEL 274
>ref|NP_006026.1| CDC42-binding protein kinase beta (DMPK-like)
gb|AAD37506.1|AF128625_1 (AF128625) CDC42-binding protein kinase beta [Homo sapiens]
Length = 1711
Score = 34.4 bits (77), Expect = 1.5
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 140 DRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYK-EPQSPKIVVLEQELVRAEA 316
D + Q ++ ++ + + R +KQK++ Q+ + + E + K+ + QE+ RAE
Sbjct: 565 DAHQQRKLALQEFSELNERMAELRAQKQKVSRQLRDKEEEMEVATQKVDAMRQEMRRAEK 624
Query: 317 ESLVAEAQLSNITREKVKAAYTYQFDALREHCE 415
EAQL + E K LREH E
Sbjct: 625 LRKELEAQLDDAVAEASKER------KLREHSE 651
>gb|AAA91764.1| (L35238) non-muscle tropomyosin [Xenopus laevis]
Length = 248
Score = 34.4 bits (77), Expect = 1.5
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Frame = +2
Query: 197 VQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAA 376
VQ + ++ K + A KY+E + K+V+LE EL RAE + V+E + S++ E
Sbjct: 107 VQEMQLKEAKHIAEEADRKYEEV-ARKLVILEGELERAEERAEVSELKCSDLEEELKNV- 164
Query: 377 YTYQFDALREHCEKVAIIAGYGKHLLELIDDTPVTPGETRQAYDGYEASK--AIIQDCED 550
T +L EK + + ++++ D + ETR + +K I D ED
Sbjct: 165 -TNNLKSLEAQSEKYSEKEDKYEEEIKILTD-KLKEAETRAEFAERTVTKHEKAIDDLED 222
Query: 551 ALTSWVSSN 577
L S N
Sbjct: 223 KLASAKEEN 231
>emb|CAA19194.1| (AL023635) hypothetical protein MLCB1243.13 [Mycobacterium leprae]
Length = 245
Score = 34.4 bits (77), Expect = 1.5
Identities = 23/60 (38%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
Frame = +2
Query: 449 LLELIDDTP-VTPGETRQAYDGYEASKAIIQDCEDALTSWVSSNAVVSSKLSTRARTLSQ 625
+LELIDD PGE A D +A A++ D + S VSS S L + AR +
Sbjct: 34 VLELIDDIKDAIPGELDDAQDVLDARDAMLNDAKAHADSMVSSATTESESLLSHARAEAD 93
Query: 626 R 628
R
Sbjct: 94 R 94
>gb|AAF51405.1| (AE003587) CG5080 gene product [alt 1] [Drosophila melanogaster]
gb|AAF51406.1| (AE003587) CG5080 gene product [alt 2] [Drosophila melanogaster]
Length = 554
Score = 34.0 bits (76), Expect = 2.0
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 5/166 (3%)
Frame = +2
Query: 149 DQYRVTMK---SIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAE 319
DQ R+ K I+ + ASV ++ QK +DQ + P++P+++ + ++ A
Sbjct: 161 DQKRLNAKLLEEIQKLSASVAALKESSQKASDQTQKRLEGLPKAPELLSQIEAKLQEHAA 220
Query: 320 SLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELID--DTPVTPGET 493
S+ A N +F+A + E++ + G L E + PV ET
Sbjct: 221 SVTTAAPPKNA-----------EFEA--QLLERLTSLGGQVSSLSETVQRPAAPVGLSET 267
Query: 494 RQAYDGYEASKAIIQDCEDALTSWVSSNAVVSSKLSTRARTLSQRRRNNIR 646
+AY + + D +AL S ++V +T A Q+ NI+
Sbjct: 268 DRAY-----IQELNNDTLNALAQLKSESSVEQKSAATEATERLQQAEANIQ 313
>emb|CAB60910.1| (AL132896) predicted using Genefinder; preliminary prediction
[Caenorhabditis elegans]
Length = 1365
Score = 33.6 bits (75), Expect = 2.7
Identities = 24/72 (33%), Positives = 39/72 (53%)
Frame = +2
Query: 158 RVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEA 337
R M++I+ E V+ R++ +K ++ LK +E + +E V+AE E L AE
Sbjct: 891 RERMRAIKEEEERVKAEREKVKKEEER---LKAEEEKVKVEKERNKEKVKAEEERLKAEE 947
Query: 338 QLSNITREKVKA 373
+ I +EKVKA
Sbjct: 948 EKVKIEKEKVKA 959
>gb|AAC08530.1| (AF046924) mucin [Anopheles gambiae]
Length = 122
Score = 33.6 bits (75), Expect = 2.7
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 630 AETTSALGVRDTTSLAKTCL*TTVAPGQLATATSIAKKKRKTRMLAAPSWTATAV*TASP 809
A TT+ + TT++A T TTVAPGQ T T + T + + P T + T +P
Sbjct: 37 APTTTTVAPTTTTTVAPTTT-TTVAPGQTTTTTVAPGQTTTTTVASGPVTTTGSTDTTTP 95
>emb|CAA38179.1| (X54277) cardiac tropomyosin [Coturnix coturnix]
Length = 284
Score = 33.6 bits (75), Expect = 2.7
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Frame = +2
Query: 197 VQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAA 376
+Q + ++ K + A KY+E + K+V+LE EL RAE + V+E + S++ E
Sbjct: 143 IQEMQLKEAKHIAEEADRKYEEV-ARKLVILEGELERAEERAEVSEVKCSDLEEELKNV- 200
Query: 377 YTYQFDALREHCEKVAIIAGYGKHLLELIDDTPVTPGETRQAYDGYEASK--AIIQDCED 550
T +L EK + + ++++ D + ETR + +K I D ED
Sbjct: 201 -TNNLKSLEAQSEKYSEKEDKYEEEIKILSD-KLKEAETRAEFAERSVAKLEKSIDDLED 258
Query: 551 ALTSWVSSNAVVSSKL 598
L + +S +L
Sbjct: 259 ELYAQKLKYKAISEEL 274
>sp|Q10221|YAYE_SCHPO HYPOTHETICAL 39.8 KD PROTEIN C4H3.14C IN CHROMOSOME I
pir||T38894 hypothetical coiled-coil protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAA93353.1| (Z69380) hypothetical coiled-coil protein [Schizosaccharomyces
pombe]
Length = 345
Score = 33.6 bits (75), Expect = 2.7
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +2
Query: 173 SIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEAQLSNI 352
S++ +ASV +RKQ+ + +++ + + ++ EQ+ ++ E E L AE + +N
Sbjct: 115 SLKMQKASVSSMVNRKQRAAKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAETERANS 174
Query: 353 TR---EKVKAAYTYQFDALREHCEK 418
EK K A +++ LR C K
Sbjct: 175 ETEQYEKQKEALEEEYEELRNECLK 199
>pir||I78843 receptor protein-tyrosine kinase - human (fragment)
gb|AAA74245.1| (L36644) receptor protein-tyrosine kinase [Homo sapiens]
Length = 991
Score = 33.2 bits (74), Expect = 3.5
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 215 RKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAES----LVAEAQLSNITREKVKAAYT 382
+K KI L ++EP P ++LE E+ E + + +++ + IT E +K A
Sbjct: 452 KKGKIAKNSISLSWQEPDRPNGIILEYEIKHFEKDQETSYTIIKSKETTITAEGLKPASV 511
Query: 383 YQFDALREHCEKVAIIAGYG 442
Y F + AGYG
Sbjct: 512 YVFQI------RARTAAGYG 525
>emb|CAA38180.1| (X54278) cytoskeletal tropomyosin [Coturnix coturnix]
Length = 248
Score = 33.2 bits (74), Expect = 3.5
Identities = 34/127 (26%), Positives = 58/127 (44%), Gaps = 2/127 (1%)
Frame = +2
Query: 197 VQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAA 376
+Q + ++ K + A KY+E + K+V+LE EL RAE + V+E + S++ E
Sbjct: 107 IQEMQLKEAKHIAEEADRKYEEV-ARKLVILEGELERAEERAEVSEVKCSDLEEELKNV- 164
Query: 377 YTYQFDALREHCEKVAIIAGYGKHLLELIDDTPVTPGETRQAYDGYEASK--AIIQDCED 550
T +L EK + + ++++ D + ETR + +K I D ED
Sbjct: 165 -TNNLKSLEAQSEKYSEKEDKYEEEIKILSD-KLKEAETRAEFAERSVAKLEKSIDDLED 222
Query: 551 ALTSWVSSN 577
L N
Sbjct: 223 KLAQAKEEN 231
>sp|P54756|EPA5_HUMAN EPHRIN TYPE-A RECEPTOR 5 PRECURSOR (TYROSINE-PROTEIN KINASE
RECEPTOR EHK-1) (EPH HOMOLOGY KINASE-1) (RECEPTOR
PROTEIN-TYROSINE KINASE HEK7)
emb|CAA64700.1| (X95425) EHK-1 receptor tyrosine kinase [Homo sapiens]
Length = 1037
Score = 33.2 bits (74), Expect = 3.5
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 215 RKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAES----LVAEAQLSNITREKVKAAYT 382
+K KI L ++EP P ++LE E+ E + + +++ + IT E +K A
Sbjct: 476 KKGKIAKNSISLSWQEPDRPNGIILEYEIKHFEKDQETSYTIIKSKETTITAEGLKPASV 535
Query: 383 YQFDALREHCEKVAIIAGYG 442
Y F + AGYG
Sbjct: 536 YVFQI------RARTAAGYG 549
>ref|NP_031963.1| Eph receptor A5
sp|Q60629|EPA5_MOUSE EPHRIN TYPE-A RECEPTOR 5 PRECURSOR (TYROSINE-PROTEIN KINASE
RECEPTOR EHK-1) (EPH HOMOLOGY KINASE-1) (BRAIN-SPECIFIC
KINASE) (CEK-7)
pir||I48967 brain-specific kinase - mouse
gb|AAA17038.1| (U07357) brain-specific kinase [Mus musculus]
Length = 877
Score = 32.8 bits (73), Expect = 4.5
Identities = 22/76 (28%), Positives = 37/76 (47%), Gaps = 4/76 (5%)
Frame = +2
Query: 215 RKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAES----LVAEAQLSNITREKVKAAYT 382
+K KI L ++EP P ++LE E+ E + + +++ ++IT E +K A
Sbjct: 314 KKGKIAKNSISLSWQEPDRPNGIILEYEIKYFEKDQETSYTIIKSKETSITAEGLKPASV 373
Query: 383 YQFDALREHCEKVAIIAGYG 442
Y F + AGYG
Sbjct: 374 YVFQI------RARTAAGYG 387
>sp|P45444|DYHC_EMENI DYNEIN HEAVY CHAIN, CYTOSOLIC (DYHC)
pir||A53489 dynein heavy chain, cytosolic - Emericella nidulans
gb|AAA18338.1| (U03904) cytoplasmic dynein [Aspergillus nidulans]
Length = 4344
Score = 32.8 bits (73), Expect = 4.5
Identities = 27/123 (21%), Positives = 63/123 (50%), Gaps = 8/123 (6%)
Frame = +2
Query: 89 QLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSR-------DRKQKITDQIAQ 247
++G L E+G+LE+Q + + + +I ++E+S+ + Q I ++ +
Sbjct: 3404 RVGPLRDEVGQLEEQALQTKAEAQAIENTINDLESSIATYKSEYTALISETQAIKAEMER 3463
Query: 248 LKYKEPQSPKIV-VLEQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVA 424
+++K +S +++ L E R E S E Q+S + + + AA + + + A
Sbjct: 3464 VQFKVDRSVRLLDSLSSERTRWEEGSKSFETQISTLIGDVLIAAAFLAYAGFYDQQFRKA 3523
Query: 425 IIAGYGKHLLE 457
+ + +HL++
Sbjct: 3524 MTEDWVQHLVQ 3534
>gb|AAC45105.1| (U68012) primary sigma factor [Borrelia garinii]
Length = 450
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/120 (19%), Positives = 56/120 (46%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K + K + L
Sbjct: 118 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKRIEIEKSLKL 177
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 178 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPMDKIISMSEEIA----KGKQMMQHAKD 229
>gb|AAC45098.1| (U68015) primary sigma factor [Borrelia afzelii]
gb|AAC45099.1| (U68016) primary sigma factor [Borrelia afzelii]
gb|AAC45102.1| (U68007) primary sigma factor [Borrelia garinii]
Length = 450
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/120 (19%), Positives = 56/120 (46%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K + K + L
Sbjct: 118 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKRIEIEKSLKL 177
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 178 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPMDKIISMSEEIA----KGKQMMQHAKD 229
>gb|AAC45106.1| (U68013) primary sigma factor [Borrelia garinii]
Length = 450
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/120 (19%), Positives = 56/120 (46%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K + K + L
Sbjct: 118 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKRIEIEKSLKL 177
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 178 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPMDKIISMSEEIA----KGKQMMQHAKD 229
>gb|AAC45101.1| (U68005) primary sigma factor [Borrelia garinii]
Length = 450
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/120 (19%), Positives = 56/120 (46%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K + K + L
Sbjct: 118 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKRIEIEKSLKL 177
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 178 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPMDKIISMSEEIA----KGKQMMQHAKD 229
>gb|AAC45097.1| (U68010) primary sigma factor [Borrelia afzelii]
Length = 450
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/120 (19%), Positives = 56/120 (46%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K + K + L
Sbjct: 118 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKRIEIEKSLKL 177
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 178 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPMDKIISMSEEIA----KGKQMMQHAKD 229
>gb|AAC45103.1| (U68008) primary sigma factor [Borrelia garinii]
Length = 450
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/120 (19%), Positives = 56/120 (46%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K + K + L
Sbjct: 118 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKRIEIEKSLKL 177
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 178 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPMDKIISMSEEIA----KGKQMMQHAKD 229
>gb|AAC45104.1| (U68011) primary sigma factor [Borrelia garinii]
gb|AAC45107.1| (U68014) primary sigma factor [Borrelia garinii]
Length = 450
Score = 32.8 bits (73), Expect = 4.5
Identities = 23/120 (19%), Positives = 56/120 (46%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K + K + L
Sbjct: 118 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKRIEIEKSLKL 177
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 178 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPMDKIISMSEEIA----KGKQMMQHAKD 229
>ref|NP_035971.1| mitogen-activated protein kinase 7
dbj|BAA82039.1| (AB019373) ERK5 [Mus musculus]
Length = 806
Score = 32.8 bits (73), Expect = 4.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 528 PLSKTVRMLSPAGSLPMPSFLPSCPP 605
P+S++ L PAGS+P P+ P CPP
Sbjct: 605 PVSQSTGPLQPAGSIPGPASQPVCPP 630
>pir||A44131 tropomyosin beta 2 - mouse
gb|AAA37288.1| (M87635) beta-tropomyosin [Mus musculus]
Length = 284
Score = 32.8 bits (73), Expect = 4.5
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Frame = +2
Query: 167 MKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEAQLS 346
MK +E ++ K D + KY+E + K+V+LE EL R+E + VAE++
Sbjct: 135 MKDEEKMELQEMQLKEAKHIAED--SDRKYEEV-ARKLVILEGELERSEERAEVAESKCG 191
Query: 347 NITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDDTPVTPGETRQAYDGYEASK 526
++ E++K T +L +K + + ++L+++ + ETR + +K
Sbjct: 192 DL-EEELKIV-TNNLKSLEAQADKYSTKEDKYEEEIKLLEE-KLKEAETRAEFAERSVAK 248
Query: 527 --AIIQDCEDALTSWVSSNAVVSSKL 598
I D E+ L S N + L
Sbjct: 249 LEKTIDDLEETLASAKEENVEIHQTL 274
>pir||S51604 receptor-like tyrosine kinase Ehk-1 - rat
Length = 981
Score = 32.5 bits (72), Expect = 6.0
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 215 RKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAES----LVAEAQLSNITREKVKAAYT 382
+K KI L ++EP P ++LE E+ E + + +++ + IT E +K A
Sbjct: 478 KKGKIAKNSISLSWQEPDRPNGIILEYEIKYFEKDQETSYTIIKSKETTITAEGLKPASV 537
Query: 383 YQFDALREHCEKVAIIAGYG 442
Y F + AGYG
Sbjct: 538 YVFQI------RARTAAGYG 551
>ref|NP_038490.1| adrenergic receptor, beta 3
gb|AAF05768.1|AF193027_1 (AF193027) beta-3b adrenergic receptor splice variant [Mus
musculus]
Length = 404
Score = 32.5 bits (72), Expect = 6.0
Identities = 25/67 (37%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Frame = -2
Query: 760 ILVFLFFFAIEVAVASCPGATVVQRHVLAREVVSLTPSADVVSASLRQCAGTGGQLGRND 581
+LV LF +A VA QRH+L RE+ +P S S TGG D
Sbjct: 214 LLVMLFVYARVFVVAKR------QRHLLRRELGRFSPEESPPSPSRSPSPATGGTPAAPD 267
Query: 580 GI---GRDPA 560
G+ GR PA
Sbjct: 268 GVPPCGRRPA 277
>sp|P25962|B3AR_MOUSE BETA-3 ADRENERGIC RECEPTOR
pir||S32804 beta-3-adrenergic receptor - mouse
emb|CAA51384.1| (X72862) beta-3-adrenergic receptor [Mus musculus]
Length = 400
Score = 32.5 bits (72), Expect = 6.0
Identities = 25/67 (37%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Frame = -2
Query: 760 ILVFLFFFAIEVAVASCPGATVVQRHVLAREVVSLTPSADVVSASLRQCAGTGGQLGRND 581
+LV LF +A VA QRH+L RE+ +P S S TGG D
Sbjct: 214 LLVMLFVYARVFVVAKR------QRHLLRRELGRFSPEESPPSPSRSPSPATGGTPAAPD 267
Query: 580 GI---GRDPA 560
G+ GR PA
Sbjct: 268 GVPPCGRRPA 277
>emb|CAA42966.1| (X60438) beta-3-adrenergic-receptor [Mus musculus]
Length = 388
Score = 32.5 bits (72), Expect = 6.0
Identities = 25/67 (37%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Frame = -2
Query: 760 ILVFLFFFAIEVAVASCPGATVVQRHVLAREVVSLTPSADVVSASLRQCAGTGGQLGRND 581
+LV LF +A VA QRH+L RE+ +P S S TGG D
Sbjct: 214 LLVMLFVYARVFVVAKR------QRHLLRRELGRFSPEESPPSPSRSPSPATGGTPAAPD 267
Query: 580 GI---GRDPA 560
G+ GR PA
Sbjct: 268 GVPPCGRRPA 277
>pir||S51603 receptor-like tyrosine kinase Ehk-1 - rat
Length = 893
Score = 32.5 bits (72), Expect = 6.0
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 215 RKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAES----LVAEAQLSNITREKVKAAYT 382
+K KI L ++EP P ++LE E+ E + + +++ + IT E +K A
Sbjct: 366 KKGKIAKNSISLSWQEPDRPNGIILEYEIKYFEKDQETSYTIIKSKETTITAEGLKPASV 425
Query: 383 YQFDALREHCEKVAIIAGYG 442
Y F + AGYG
Sbjct: 426 YVFQI------RARTAAGYG 439
>gb|AAC45100.1| (U68006) primary sigma factor [Borrelia burgdorferi]
Length = 450
Score = 32.5 bits (72), Expect = 6.0
Identities = 23/120 (19%), Positives = 57/120 (47%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K+ + K + L
Sbjct: 118 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKKIEIEKSLKL 177
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 178 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPTDKIISMSEEIA----KGKQMMQHAKD 229
>sp|P54757|EPA5_RAT EPHRIN TYPE-A RECEPTOR 5 PRECURSOR (TYROSINE-PROTEIN KINASE
RECEPTOR EHK-1) (EPH HOMOLOGY KINASE-1)
pir||S49015 receptor tyrosine kinase Ehk-1 - rat
Length = 1005
Score = 32.5 bits (72), Expect = 6.0
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 215 RKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAES----LVAEAQLSNITREKVKAAYT 382
+K KI L ++EP P ++LE E+ E + + +++ + IT E +K A
Sbjct: 478 KKGKIAKNSISLSWQEPDRPNGIILEYEIKYFEKDQETSYTIIKSKETTITAEGLKPASV 537
Query: 383 YQFDALREHCEKVAIIAGYG 442
Y F + AGYG
Sbjct: 538 YVFQI------RARTAAGYG 551
>pir||S47489 receptor tyrosine kinase - rat
emb|CAA55357.1| (X78689) receptor tyrosine kinase [Rattus norvegicus]
Length = 898
Score = 32.5 bits (72), Expect = 6.0
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 215 RKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAES----LVAEAQLSNITREKVKAAYT 382
+K KI L ++EP P ++LE E+ E + + +++ + IT E +K A
Sbjct: 371 KKGKIAKNSISLSWQEPDRPNGIILEYEIKYFEKDQETSYTIIKSKETTITAEGLKPASV 430
Query: 383 YQFDALREHCEKVAIIAGYG 442
Y F + AGYG
Sbjct: 431 YVFQI------RARTAAGYG 444
>sp|P52323|RPSD_BORBU RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70)
pir||G70188 transcription initiation factor sigma-70 (rpoD) - Lyme disease
spirochete
gb|AAC67061.1| (AE001171) RNA polymerase sigma-70 factor (rpoD) [Borrelia
burgdorferi]
Length = 631
Score = 32.5 bits (72), Expect = 6.0
Identities = 23/120 (19%), Positives = 57/120 (47%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K+ + K + L
Sbjct: 282 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKKIEIEKSLKL 341
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 342 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPTDKIISMSEEIA----KGKQMMQHAKD 393
>dbj|BAB06206.1| (AP001515) chromosome segregation SMC protein [Bacillus halodurans]
Length = 1188
Score = 32.5 bits (72), Expect = 6.0
Identities = 36/156 (23%), Positives = 70/156 (44%)
Frame = +2
Query: 89 QLGVLVYEIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQ 268
++ VLVY+I + ++ + + + R +E + Q + QIAQL +E Q
Sbjct: 226 EIAVLVYDIDRIHTEWNKAKEALDLLKEQHRALEQQISEKEQSVQGLKQQIAQLD-EEAQ 284
Query: 269 SPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKH 448
+ +Q+L+ A +E+L ++ +E++K A + L+ E +A H
Sbjct: 285 -----IAQQQLLSA-SETLEKREGRRDVLKERLKNAAENREQLLQTIREGEEKVASLKVH 338
Query: 449 LLELIDDTPVTPGETRQAYDGYEASKAIIQDCEDAL 556
L + ++AY+ A +A I++ E AL
Sbjct: 339 LAK-------EEEAKQKAYEQMTALEAEIRNQEKAL 367
>ref|NP_036810.1| tropomycin 4
sp|P09495|TPM4_RAT TROPOMYOSIN 4, EMBRYONIC FIBROBLAST ISOFORM (TM-4)
pir||S10623 tropomyosin 4, fibroblast - rat
gb|AAA42291.1| (J02780) tropomyosin TM4 [Rattus norvegicus]
emb|CAA68360.1| (Y00169) fibroblast tropomyosin 4 [Rattus norvegicus]
Length = 248
Score = 32.5 bits (72), Expect = 6.0
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 2/142 (1%)
Frame = +2
Query: 197 VQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEAQLSNITREKVKAA 376
+Q + ++ K + A KY+E + K+V+LE EL RAE + V+E + S++ E
Sbjct: 107 IQEMQLKEAKHIAEEADRKYEEV-ARKLVILEGELERAEERAEVSELKSSDLEEELKNV- 164
Query: 377 YTYQFDALREHCEKVAIIAGYGKHLLELIDDTPVTPGETRQAYDGYEASK--AIIQDCED 550
T +L EK + + ++L+ D + ETR + SK I D E+
Sbjct: 165 -TNNLKSLEAASEKYSEKEDKYEEEIKLLSD-KLKEAETRAEFAERTVSKLEKTIDDLEE 222
Query: 551 ALTSWVSSNAVVSSKLSTRARTLS 622
L N + L L+
Sbjct: 223 KLAQAKEENVGLHQTLDQTLNELN 246
>pir||JC4613 primary sigma factor - Lyme disease spirochete
gb|AAC44104.1| (U17591) primary sigma factor [Borrelia burgdorferi]
Length = 543
Score = 32.5 bits (72), Expect = 6.0
Identities = 23/120 (19%), Positives = 57/120 (47%)
Frame = +2
Query: 110 EIGELEDQYVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVL 289
E+ D Y+D ++ + + R I + ++ + R ++ + + K+ + K + L
Sbjct: 194 ELRIFSDDYIDSANKIKDLQRQQRIILSRLKIEKIRDLRVLGRDLTIAEKKIEIEKSLKL 253
Query: 290 EQELVRAEAESLVAEAQLSNITREKVKAAYTYQFDALREHCEKVAIIAGYGKHLLELIDD 469
+++ ++ + + EAQL+ E+++ Y Y D + E++A GK +++ D
Sbjct: 254 KEDAIKEQ----ITEAQLAQKELERIEMYYEYPTDKIISMSEEIA----KGKQMMQHAKD 305
>gb|AAC40745.1| (AF037218) very large tegument protein [Human herpesvirus 7]
Length = 2059
Score = 32.1 bits (71), Expect = 7.8
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = +2
Query: 134 YVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAE 313
YVD + +T++ + N++ +V D + + + LKY QS VLEQ + +
Sbjct: 1827 YVDSIKNFLLTIRHLENVQQNV----DFRTILQSRNFDLKYLLTQSWTQNVLEQSIFHVQ 1882
Query: 314 AESLVAEAQLSNITREKV 367
+ ++A+ + ++ +K+
Sbjct: 1883 LDKIIADIKQPQLSLKKI 1900
>ref|NP_043785.1| large tegument protein
sp|P52362|TEGU_HSV7J LARGE TEGUMENT PROTEIN
pir||T41933 large tegument protein - human herpesvirus 7 (strain JI)
gb|AAC54693.1| (U43400) large tegument protein [Human herpesvirus 7]
Length = 2059
Score = 32.1 bits (71), Expect = 7.8
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = +2
Query: 134 YVDRYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAE 313
YVD + +T++ + N++ +V D + + + LKY QS VLEQ + +
Sbjct: 1827 YVDSIKNFLLTIRHLENVQQNV----DFRTILQSRNFDLKYLLTQSWTQNVLEQSIFHVQ 1882
Query: 314 AESLVAEAQLSNITREKV 367
+ ++A+ + ++ +K+
Sbjct: 1883 LDKIIADIKQPQLSLKKI 1900
>pir||S66308 substrate-inducible nitrate reductase 2 - soybean (fragment)
Length = 884
Score = 32.1 bits (71), Expect = 7.8
Identities = 15/40 (37%), Positives = 20/40 (49%)
Frame = +3
Query: 543 VRMLSPAGSLPMPSFLPSCPPVPAHCLSDAETTSALGVRD 662
VR L P +P P LP PP + SD E + L ++D
Sbjct: 12 VRPLKPGPDIPRPKKLPQAPPPLSDSSSDEEEDTTLNLKD 51
>sp|P39870|NIA2_SOYBN INDUCIBLE NITRATE REDUCTASE 2 (NR)
gb|AAA96813.1| (U13987) inducible nitrate reductase 2 [Glycine max]
Length = 890
Score = 32.1 bits (71), Expect = 7.8
Identities = 15/40 (37%), Positives = 20/40 (49%)
Frame = +3
Query: 543 VRMLSPAGSLPMPSFLPSCPPVPAHCLSDAETTSALGVRD 662
VR L P +P P LP PP + SD E + L ++D
Sbjct: 18 VRPLKPGPDIPRPKKLPQAPPPLSDSSSDEEEDTTLNLKD 57
>emb|CAB60918.1| (AL132896) predicted using Genefinder; preliminary prediction
[Caenorhabditis elegans]
Length = 1408
Score = 32.1 bits (71), Expect = 7.8
Identities = 19/84 (22%), Positives = 42/84 (49%)
Frame = +2
Query: 170 KSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEAQLSN 349
K ++A + + K+K+ + ++K ++ ++ + V E+E ++AE E + E +
Sbjct: 925 KEEERLKAEEEKVKVEKEKVKAEEEKVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVK 984
Query: 350 ITREKVKAAYTYQFDALREHCEKV 421
+K+KAA + E +KV
Sbjct: 985 AEEQKIKAAEEERRKERAEDAKKV 1008
>gb|AAC64112.1| (AF089737) M protein [Streptococcus pyogenes]
Length = 186
Score = 32.1 bits (71), Expect = 7.8
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +2
Query: 143 RYDQYRVTMKSIRNIEASVQPSRDRKQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAES 322
R QY+ ++ + Q ++R++K+ Q Y+E Q K EQ+ + AE +
Sbjct: 82 REGQYQDKIEELEKERKEKQERQERQEKLERQHQDKHYQEQQ--KKHQQEQQQLEAEKQK 139
Query: 323 LVAEAQLSNITRE 361
L E Q+S+ +R+
Sbjct: 140 LAKEKQISDASRQ 152
>pir||S74486 hypothetical protein sll1061 - Synechocystis sp. (strain PCC 6803)
dbj|BAA16638.1| (D90899) hypothetical protein [Synechocystis sp.]
Length = 171
Score = 32.1 bits (71), Expect = 7.8
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 164 TMKSIRNIEASVQPSRDR-KQKITDQIAQLKYKEPQSPKIVVLEQELVRAEAESLVAEAQ 340
T+KSIR S+Q R + +I++ + ++ +E + ++ E + ++ E ++ + E Q
Sbjct: 30 TLKSIRRSRGSLQSWNSRYRSQISELNSSIEIQEEEKNRLQA-ELDQIKIEVQNSIVEKQ 88
Query: 341 LSNITREKVKA 373
I R+K+KA
Sbjct: 89 KMIIERDKIKA 99
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229269417
Number of Sequences: 565281
Number of extensions: 4422512
Number of successful extensions: 17312
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 17284
Number of HSP's gapped (non-prelim): 80
length of query: 269
length of database: 177,575,912
effective HSP length: 54
effective length of query: 215
effective length of database: 147,050,738
effective search space: 31615908670
effective search space used: 31615908670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)