Score E
Sequences producing significant alignments: (bits) Value
sp|P52809|RL44_PICJA 60S RIBOSOMAL PROTEIN L44 (L41) >gi|12... 210 1e-53
gb|AAF21253.1|AF053457_1 (AF053457) ribosomal protein L41 [... 208 7e-53
sp|Q00477|R44P_CANMA 60S RIBOSOMAL PROTEIN L44 P (L41) (L41... 205 6e-52
ref|NP_012010.1| Ribosomal protein L42B (YL27) (L41B) (YP44... 205 6e-52
pir||S63114 ribosomal protein L36a.e.c14, cytosolic - yeast... 204 1e-51
sp|P31866|RL44_PICGU 60S RIBOSOMAL PROTEIN L44 (L41) >gi|21... 203 2e-51
emb|CAA63277.1| (X92517) orf [Saccharomyces cerevisiae] 203 2e-51
sp|P31028|RL44_DEBOC 60S RIBOSOMAL PROTEIN L44 (L41) >gi|47... 203 3e-51
sp|P31027|RL44_KLULA 60S RIBOSOMAL PROTEIN L44 (L41) >gi|42... 200 1e-50
dbj|BAA74505.1| (AB008095) ribosomal protein L41 [Candida m... 200 2e-50
sp|P27076|RL44_KLUMA 60S RIBOSOMAL PROTEIN L44 (L41) >gi|28... 198 6e-50
dbj|BAA83465.1| (AB021315) L41 ribosomal protein [Coprinus ... 198 7e-50
sp|O59870|RL44_PHARH 60S RIBOSOMAL PROTEIN L44 (L41) >gi|31... 197 2e-49
sp|P27075|RL44_CANTR 60S RIBOSOMAL PROTEIN L44 (L41) >gi|28... 194 1e-48
sp|P27074|R44Q_CANMA 60S RIBOSOMAL PROTEIN L44 Q (L41) (L41... 192 3e-48
dbj|BAA07784.1| (D43687) L41 ribosomal protein [Candida mal... 191 9e-48
dbj|BAA07783.1| (D43686) L41 ribosomal protein [Candida mal... 188 8e-47
pir||T37718 60s ribosomal protein l44 - fission yeast (Schi... 185 4e-46
sp|O23290|RL44_ARATH 60S RIBOSOMAL PROTEIN L44 >gi|7440769|... 180 1e-44
sp|Q96499|RL44_GOSHI 60S RIBOSOMAL PROTEIN L44 >gi|2119128|... 178 7e-44
gb|AAA34366.1| (M62396) ribosomal protein L41 [Candida malt... 177 2e-43
sp|P48166|RL44_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L44 >gi... 171 9e-42
ref|NP_063918.1| ribosomal protein L44 >gi|2815502|sp|P0989... 169 3e-41
ref|NP_000992.1| ribosomal protein L36a >gi|71186|pir||R6HU... 168 8e-41
sp|P90702|RL44_BRUMA 60S RIBOSOMAL PROTEIN L44 >gi|1813690|... 166 3e-40
emb|CAB55877.1| (AL035422) dJ164F3.3 (ribosomal protein L44... 163 3e-39
sp|P49213|RL44_CHLRE 60S RIBOSOMAL PROTEIN L44 (L41) >gi|74... 162 6e-39
gb|AAF87576.1|AF271208_1 (AF271208) putative large subunit ... 154 1e-36
sp|O97231|RL44_PLAFA 60S RIBOSOMAL PROTEIN L44 >gi|4493887|... 152 7e-36
gb|AAF52596.1| (AE003619) CG7424 gene product [Drosophila m... 150 1e-35
emb|CAB11607.1| (Z98950) match: multiple proteins~match: CE... 148 6e-35
sp|P17843|RL44_TRYBB 60S RIBOSOMAL PROTEIN L44 >gi|71189|pi... 143 2e-33
gb|AAD31928.2|AF148853_1 (AF148853) 60S ribosomal protein L... 141 1e-32
dbj|BAA21971.1| (AB002709) ribosomal protein L44 [Entamoeba... 90 2e-17
sp|O27365|RL44_METTH 50S RIBOSOMAL PROTEIN L44E >gi|7447257... 61 1e-08
sp|O59603|RL44_PYRHO 50S RIBOSOMAL PROTEIN L44E >gi|7447256... 60 4e-08
sp|P54027|RL44_METJA 50S RIBOSOMAL PROTEIN L44E >gi|2129258... 58 2e-07
pir||F75022 lsu ribosomal protein l44e (rpl44e) PAB1221 - P... 56 5e-07
sp|Q9YF00|RL44_AERPE 50S RIBOSOMAL PROTEIN L44E >gi|7521377... 50 3e-05
pir||S32479 hypothetical protein C - yeast (Kluyveromyces m... 44 0.002
sp|O28936|RL44_ARCFU 50S RIBOSOMAL PROTEIN L44E >gi|7447255... 44 0.003
pir||T27644 hypothetical protein ZK1010.7 - Caenorhabditis ... 34 2.2
gb|AAC62700.1| (AF083072) histone H1 DNA binding protein [C... 33 5.0
dbj|BAB13390.1| (AB046784) KIAA1564 protein [Homo sapiens] 32 6.5
pir||T19835 hypothetical protein C38D9.5 - Caenorhabditis e... 32 8.6
>sp|P52809|RL44_PICJA 60S RIBOSOMAL PROTEIN L44 (L41)
dbj|BAA11057.1| (D67040) ribosomal protein L41 [Candida utilis]
Length = 106
Score = 210 bits (530), Expect = 1e-53
Identities = 99/106 (93%), Positives = 100/106 (93%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVLRLECV CKTK QLALKRCKHFELGGDKK KG AL F
Sbjct: 61 KAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKGQALQF 106
>gb|AAF21253.1|AF053457_1 (AF053457) ribosomal protein L41 [Pichia ciferrii]
Length = 106
Score = 208 bits (524), Expect = 7e-53
Identities = 97/106 (91%), Positives = 100/106 (93%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVLRLECV CKTK QL+LKRCKHFELGGD+K KG AL F
Sbjct: 61 KAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDRKQKGQALQF 106
>sp|Q00477|R44P_CANMA 60S RIBOSOMAL PROTEIN L44 P (L41) (L41 P-TYPE)
dbj|BAA07782.1| (D43686) L41 ribosomal protein [Candida maltosa]
Length = 106
Score = 205 bits (516), Expect = 6e-52
Identities = 95/106 (89%), Positives = 100/106 (93%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYCKG+ECRKH+QHKVTQYKAGK+SLFAQGKRRYDRKQSG+GGQTKPVFHK
Sbjct: 1 MVNVPKTRKTYCKGRECRKHSQHKVTQYKAGKSSLFAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVLRLECV CKTK QLALKRCKHFELGGDKK KG AL F
Sbjct: 61 KAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKGQALQF 106
>ref|NP_012010.1| Ribosomal protein L42B (YL27) (L41B) (YP44); Rpl42bp
ref|NP_014237.2| Ribosomal protein L42A (YL27) (L41A); Rpl42ap
sp|P02405|RL44_YEAST 60S RIBOSOMAL PROTEIN L42 (L44) (YL27) (YP44) (L41)
pir||R6BY44 ribosomal protein L36a.e.c8, cytosolic - yeast (Saccharomyces
cerevisiae)
gb|AAA34927.1| (M62391) ribosomal protein L41 [Saccharomyces cerevisiae]
gb|AAA34928.1| (M62392) ribosomal protein L41 [Saccharomyces cerevisiae]
dbj|BAA01435.1| (D10578) ribosomal protein L41a [Saccharomyces cerevisiae]
dbj|BAA01436.1| (D10579) ribosomal protein L41b [Saccharomyces cerevisiae]
gb|AAB68420.1|AAB68420 (U10398) Mak18p: ribosomal protein [Saccharomyces cerevisiae]
Length = 106
Score = 205 bits (516), Expect = 6e-52
Identities = 95/106 (89%), Positives = 99/106 (92%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYCKGK CRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSG+GGQTKPVFHK
Sbjct: 1 MVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVLRLECVKCKT+ QL LKRCKHFELGG+KK KG AL F
Sbjct: 61 KAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQALQF 106
>pir||S63114 ribosomal protein L36a.e.c14, cytosolic - yeast (Saccharomyces
cerevisiae)
emb|CAA96049.1| (Z71438) ORF YNL162w [Saccharomyces cerevisiae]
Length = 116
Score = 204 bits (513), Expect = 1e-51
Identities = 94/106 (88%), Positives = 99/106 (92%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
+VN+PKTR TYCKGK CRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSG+GGQTKPVFHK
Sbjct: 11 LVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHK 70
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVLRLECVKCKT+ QL LKRCKHFELGG+KK KG AL F
Sbjct: 71 KAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQALQF 116
>sp|P31866|RL44_PICGU 60S RIBOSOMAL PROTEIN L44 (L41)
dbj|BAA01017.1| (D10153) ribosomal protein L41 [Pichia guilliermondii]
gb|AAA35356.1| (M62395) ribosomal protein L41 [Pichia sp.]
Length = 103
Score = 203 bits (512), Expect = 2e-51
Identities = 94/103 (91%), Positives = 98/103 (94%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYCKGK+CRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSG+GGQTKPVFHK
Sbjct: 1 MVNVPKTRRTYCKGKDCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAA 347
KAKTTKKVVLRLECV CKTK QL+LKRCKHFELGGDKK KG A
Sbjct: 61 KAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKGQA 103
>emb|CAA63277.1| (X92517) orf [Saccharomyces cerevisiae]
Length = 105
Score = 203 bits (511), Expect = 2e-51
Identities = 94/105 (89%), Positives = 98/105 (92%)
Frame = +3
Query: 42 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 221
VN+PKTR TYCKGK CRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSG+GGQTKPVFHKK
Sbjct: 1 VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK 60
Query: 222 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
AKTTKKVVLRLECVKCKT+ QL LKRCKHFELGG+KK KG AL F
Sbjct: 61 AKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQALQF 105
>sp|P31028|RL44_DEBOC 60S RIBOSOMAL PROTEIN L44 (L41)
pir||S32481 ribosomal protein L36a.e, cytosolic - yeast (Schwanniomyces
occidentalis)
emb|CAA50074.1| (X70807) ribosomal protein L41 [Debaryomyces occidentalis]
Length = 106
Score = 203 bits (510), Expect = 3e-51
Identities = 94/106 (88%), Positives = 98/106 (91%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQ GYGGQTK +FHK
Sbjct: 1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQRGYGGQTKQIFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVL+LECV CKTK QL+LKRCKHFELGGDKK KG AL F
Sbjct: 61 KAKTTKKVVLKLECVVCKTKAQLSLKRCKHFELGGDKKQKGQALQF 106
>sp|P31027|RL44_KLULA 60S RIBOSOMAL PROTEIN L44 (L41)
pir||S32478 ribosomal protein L36a.e - yeast (Kluyveromyces marxianus var.
lactis)
gb|AAA35262.1| (M94988) ribosomal protein [Kluyveromyces lactis]
Length = 106
Score = 200 bits (504), Expect = 1e-50
Identities = 92/106 (86%), Positives = 98/106 (91%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYCKGKECRKH QHKVTQYKAGKASL+AQGKRRYDRKQSG+GGQTK +FHK
Sbjct: 1 MVNVPKTRKTYCKGKECRKHAQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVLRLEC+ CKTK QLALKRCKHFELGG+KK KG AL F
Sbjct: 61 KAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKGQALQF 106
>dbj|BAA74505.1| (AB008095) ribosomal protein L41 [Candida maltosa]
Length = 106
Score = 200 bits (503), Expect = 2e-50
Identities = 92/106 (86%), Positives = 98/106 (91%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR T+CKGKECRKHTQHKVTQYKAGKASL+AQGKRRYDRKQSGYGGQTK +FHK
Sbjct: 1 MVNVPKTRKTFCKGKECRKHTQHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKQIFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVL+LEC CKTK QLALKRCKHFELGGD+K KG AL F
Sbjct: 61 KAKTTKKVVLKLECTVCKTKKQLALKRCKHFELGGDRKQKGQALQF 106
>sp|P27076|RL44_KLUMA 60S RIBOSOMAL PROTEIN L44 (L41)
pir||E43301 ribosomal protein L36a.e, cytosolic - yeast (Kluyveromyces
marxianus var. marxianus)
gb|AAA35268.1| (M62394) ribosomal protein L41 [Kluyveromyces marxianus]
dbj|BAA01437.1| (D10580) ribosomal protein L41 [Kluyveromyces marxianus]
Length = 106
Score = 198 bits (499), Expect = 6e-50
Identities = 91/106 (85%), Positives = 98/106 (91%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYCKGK CRKH+QHKVTQYKAGKASL+AQGKRRYDRKQSG+GGQTK +FHK
Sbjct: 1 MVNVPKTRKTYCKGKACRKHSQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVLRLEC+ CKTK QLALKRCKHFELGG+KK KG AL F
Sbjct: 61 KAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKGQALQF 106
>dbj|BAA83465.1| (AB021315) L41 ribosomal protein [Coprinus cinereus]
Length = 106
Score = 198 bits (498), Expect = 7e-50
Identities = 91/106 (85%), Positives = 97/106 (90%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVNIPKTR TYCKGK C+KHT HKVTQYK GK S+FAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVLRLEC CK K+Q++LKRCKHFELGG+KKTKGAAL F
Sbjct: 61 KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAALTF 106
>sp|O59870|RL44_PHARH 60S RIBOSOMAL PROTEIN L44 (L41)
gb|AAC39456.1| (AF004672) ribosomal protein L41 [Phaffia rhodozyma]
Length = 106
Score = 197 bits (495), Expect = 2e-49
Identities = 90/106 (84%), Positives = 96/106 (89%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYCKGK C+KHT HKVTQYK GK S+FAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKKVVLRLEC CK K+Q+ LKRCKHFELGGDKKTKGAA+ F
Sbjct: 61 KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAISF 106
>sp|P27075|RL44_CANTR 60S RIBOSOMAL PROTEIN L44 (L41)
pir||D43301 ribosomal protein L36a.e, cytosolic - yeast (Candida tropicalis)
gb|AAA34365.1| (M62393) ribosomal protein L41 [Candida tropicalis]
dbj|BAA01438.1| (D10581) ribosomal protein L41 [Candida tropicalis]
Length = 106
Score = 194 bits (487), Expect = 1e-48
Identities = 91/106 (85%), Positives = 95/106 (88%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVNIPKTRNTYCKGK CRKHT HKVTQYKAG+ASLFAQGKRRYDRKQSGYGGQTK VFHK
Sbjct: 1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKAGRASLFAQGKRRYDRKQSGYGGQTKQVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKK+VL+LEC CKTK QL LKRCKH ELGG+KK KG AL F
Sbjct: 61 KAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKGQALQF 106
>sp|P27074|R44Q_CANMA 60S RIBOSOMAL PROTEIN L44 Q (L41) (L41 Q-TYPE)
pir||A43301 ribosomal protein L36a.e, cytosolic - yeast (Candida maltosa)
gb|AAA34364.1| (M62390) ribosomal protein L41 [Candida maltosa]
dbj|BAA01434.1| (D10577) ribosomal protein L41 [Candida maltosa]
Length = 106
Score = 192 bits (484), Expect = 3e-48
Identities = 90/106 (84%), Positives = 95/106 (88%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVNIPKTRNTYCKGK CRKHT HKVTQYK+G+ASLFAQGKRRYDRKQSGYGGQTK VFHK
Sbjct: 1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKSGRASLFAQGKRRYDRKQSGYGGQTKQVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKK+VL+LEC CKTK QL LKRCKH ELGG+KK KG AL F
Sbjct: 61 KAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKGQALQF 106
>dbj|BAA07784.1| (D43687) L41 ribosomal protein [Candida maltosa]
Length = 98
Score = 191 bits (480), Expect = 9e-48
Identities = 89/97 (91%), Positives = 92/97 (94%)
Frame = +3
Query: 66 TYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVV 245
TYCKG+ECRKHTQHKVTQYKAGK+SLFAQGKRRYDRKQSG+GGQTKPVFHKKAKTTKKVV
Sbjct: 2 TYCKGRECRKHTQHKVTQYKAGKSSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVV 61
Query: 246 LRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
LRLECV CKTK QLALKRCKHFELGGDKK KG AL F
Sbjct: 62 LRLECVVCKTKAQLALKRCKHFELGGDKKQKGQALQF 98
>dbj|BAA07783.1| (D43686) L41 ribosomal protein [Candida maltosa]
Length = 106
Score = 188 bits (472), Expect = 8e-47
Identities = 88/106 (83%), Positives = 93/106 (87%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVNIPKTRNTYCKGK CRKHT HKVTQYKAG+ASLFAQG RRYDRKQSGYGGQTK VFHK
Sbjct: 1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKAGRASLFAQGXRRYDRKQSGYGGQTKQVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
AKTTKK+VL+LEC CKTK QL LKRCKH ELGG++K KG AL F
Sbjct: 61 XAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGERKQKGQALQF 106
>pir||T37718 60s ribosomal protein l44 - fission yeast (Schizosaccharomyces
pombe)
emb|CAB52422.1| (AL109770) 60s ribosomal protein l44 [Schizosaccharomyces pombe]
Length = 106
Score = 185 bits (466), Expect = 4e-46
Identities = 87/106 (82%), Positives = 91/106 (85%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVNIPKTR TYC GK CRKHT H+VTQYK G S AQGKRRYDRKQSG+GGQTKPVFHK
Sbjct: 1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAK TKKVVLRLECV CK K QL LKRCKHFELGG+KKTKGAA+ F
Sbjct: 61 KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106
>sp|O23290|RL44_ARATH 60S RIBOSOMAL PROTEIN L44
pir||A71405 ribosomal protein L36a.e, cytosolic - Arabidopsis thaliana
emb|CAB10211.1| (Z97336) ribosomal protein [Arabidopsis thaliana]
emb|CAB78474.1| (AL161538) ribosomal protein [Arabidopsis thaliana]
dbj|BAA99967.1| (AB015474) 60S ribosomal protein L44-like [Arabidopsis thaliana]
Length = 105
Score = 180 bits (453), Expect = 1e-44
Identities = 83/104 (79%), Positives = 90/104 (85%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVNIPKT+NTYCK KEC+KHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAAL 350
KAKTTKK+VLRL+C CK Q +KRCKHFE+GGDKK KG +L
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSL 104
>sp|Q96499|RL44_GOSHI 60S RIBOSOMAL PROTEIN L44
pir||JC4923 ribosomal protein L36a.e, cytosolic - upland cotton
gb|AAB08726.1| (U64677) ribosomal protein L44 isoform a [Gossypium hirsutum]
gb|AAB08727.1| (U64678) ribosomal protein L44 isoform b [Gossypium hirsutum]
Length = 105
Score = 178 bits (447), Expect = 7e-44
Identities = 82/104 (78%), Positives = 89/104 (84%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKT+ TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAAL 350
KAKTTKK+VLRL+C CK Q +KRCKHFE+GGDKK KG +L
Sbjct: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 104
>gb|AAA34366.1| (M62396) ribosomal protein L41 [Candida maltosa]
Length = 105
Score = 177 bits (444), Expect = 2e-43
Identities = 81/104 (77%), Positives = 89/104 (84%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKT+ TYCK KEC+KHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAAL 350
KAKTTKK+VLRL+C CK Q +KRCKHFE+GGDKK KG +L
Sbjct: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 104
>sp|P48166|RL44_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L44
pir||T19159 hypothetical protein C09H10.2 - Caenorhabditis elegans
emb|CAA90434.1| (Z50109) similar to 60S ribosomal protein~cDNA EST EMBL:T01767
comes from this gene~cDNA EST yk104e2.5 comes from this
gene~cDNA EST yk205a12.3 comes from this gene~cDNA EST
yk205a12.5 comes from this gene~cDNA EST yk370a1.3 comes
from this gene~cDNA E>
Length = 105
Score = 171 bits (429), Expect = 9e-42
Identities = 77/106 (72%), Positives = 89/106 (83%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PK R T+C GK CRKHT HKVTQYK GK S FAQG+RRYDRKQSG+GGQTKP+F K
Sbjct: 1 MVNVPKARRTFCDGK-CRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRK 59
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKK+VLR+EC +CK K QL +KRCKHFELGG KK++G + F
Sbjct: 60 KAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>ref|NP_063918.1| ribosomal protein L44
sp|P09896|RL44_HUMAN 60S RIBOSOMAL PROTEIN L44 (L36A)
pir||R6RT36 ribosomal protein L36a - rat
gb|AAB54277.1| (M19635) ribosomal protein L36a [Rattus norvegicus]
gb|AAB47245.1| (U58105) ribosomal protein [Mus musculus]
gb|AAB64204.1| (U78027) L44-like ribosomal protein [Homo sapiens]
dbj|BAA19210.1| (AB000910) ribosomal protein [Sus scrofa]
Length = 106
Score = 169 bits (424), Expect = 3e-41
Identities = 80/106 (75%), Positives = 91/106 (85%), Gaps = 2/106 (1%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR T+CK +C KH HKVTQYK GK SL+AQGKRRYDRKQSGYGGQTKP+F K
Sbjct: 1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRK 58
Query: 219 KAKTTKKVVLRLECVK--CKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKK+VLRLECV+ C++K LA+KRCKHFELGGDKK KG + F
Sbjct: 59 KAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|NP_000992.1| ribosomal protein L36a
pir||R6HU36 ribosomal protein L36a - human
gb|AAA36589.1| (M15661) ribosomal protein [Homo sapiens]
Length = 106
Score = 168 bits (421), Expect = 8e-41
Identities = 79/106 (74%), Positives = 91/106 (85%), Gaps = 2/106 (1%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR T+CK +C KH HKVTQYK GK SL+AQG+RRYDRKQSGYGGQTKP+F K
Sbjct: 1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRK 58
Query: 219 KAKTTKKVVLRLECVK--CKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKK+VLRLECV+ C++K LA+KRCKHFELGGDKK KG + F
Sbjct: 59 KAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>sp|P90702|RL44_BRUMA 60S RIBOSOMAL PROTEIN L44
gb|AAC47627.1| (U80976) ribosomal protein L44 [Brugia malayi]
Length = 105
Score = 166 bits (416), Expect = 3e-40
Identities = 74/106 (69%), Positives = 87/106 (81%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR T+C GK CR+HT HKVTQYK GK S AQG+RRYD KQ G+GGQTKP+F K
Sbjct: 1 MVNVPKTRRTFCDGK-CRRHTMHKVTQYKKGKESRLAQGRRRYDSKQKGFGGQTKPIFRK 59
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKK+VLR+EC +CK + QL +KRCKHFELGG KKT+G + F
Sbjct: 60 KAKTTKKIVLRMECTECKHRKQLPIKRCKHFELGGQKKTRGQVIQF 105
>emb|CAB55877.1| (AL035422) dJ164F3.3 (ribosomal protein L44) [Homo sapiens]
Length = 99
Score = 163 bits (408), Expect = 3e-39
Identities = 77/99 (77%), Positives = 87/99 (87%), Gaps = 2/99 (2%)
Frame = +3
Query: 42 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 221
VN+PKTR T+CK +C KH HKVTQYK GK SL+AQGKRRYDRKQSGYGGQTKP+F KK
Sbjct: 1 VNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKK 58
Query: 222 AKTTKKVVLRLECVK--CKTKLQLALKRCKHFELGGDKKTK 338
AKTTKK+VLRLECV+ C++K LA+KRCKHFELGGDKK K
Sbjct: 59 AKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 99
>sp|P49213|RL44_CHLRE 60S RIBOSOMAL PROTEIN L44 (L41)
pir||T08060 ribosomal protein L36a - Chlamydomonas reinhardtii
gb|AAB08435.1| (U31912) ribosomal protein L41 [Chlamydomonas reinhardtii]
gb|AAD22491.1|AF130727_1 (AF130727) 80S ribosomal protein L41 [Chlamydomonas reinhardtii]
Length = 99
Score = 162 bits (405), Expect = 6e-39
Identities = 73/98 (74%), Positives = 83/98 (84%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKT+ +CKG C+KH KVTQYK GKASL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNVPKTKRAFCKG--CKKHMMMKVTQYKTGKASLYAQGKRRYDRKQSGYGGQTKPVFHK 58
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKK 332
KAKTTKK+VLR++C +CK LKRCKHFE+GGDKK
Sbjct: 59 KAKTTKKIVLRMQCQECKQTCMKGLKRCKHFEIGGDKK 96
>gb|AAF87576.1|AF271208_1 (AF271208) putative large subunit ribosomal protein rpL44 [Aedes
triseriatus]
Length = 104
Score = 154 bits (385), Expect = 1e-36
Identities = 71/106 (66%), Positives = 82/106 (76%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PK R TYCK +C+ H HKVTQYK K +QG+RRYDRKQ G+GGQTKP+F K
Sbjct: 1 MVNVPKQRRTYCK--KCKVHRVHKVTQYKKSKERKASQGRRRYDRKQKGFGGQTKPIFRK 58
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKK+VLR+ECV CK + Q LKRCKHFELGGDKK KG + F
Sbjct: 59 KAKTTKKIVLRMECVDCKYRKQTPLKRCKHFELGGDKKRKGQMIQF 104
>sp|O97231|RL44_PLAFA 60S RIBOSOMAL PROTEIN L44
emb|CAB38996.1| (AL034558) predicted using hexExon; MAL3P2.9 (PFC0200w), 60S
Ribosomal protein L44, len: 105aa; Similarity to
ribosomal protein L44. S.cerevisiae 60S ribosomal
protein L44 (SW:RL44_YEAST) BLAST Score: 385, sum P(1) =
6.9e-36; 68% identity in 103 aa ove>
Length = 104
Score = 152 bits (379), Expect = 7e-36
Identities = 70/104 (67%), Positives = 81/104 (77%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR TYC K C+KHT HKV+QYK GK L + G+RRYD KQ G+GGQTKPVF K
Sbjct: 1 MVNVPKTRKTYCSNK-CKKHTMHKVSQYKKGKERLSSLGRRRYDMKQKGFGGQTKPVFKK 59
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAAL 350
KAKTTKK+VL+LEC KCK K +KRCK FE+G DKK KG A+
Sbjct: 60 KAKTTKKIVLKLECTKCKKKRFQTMKRCKTFEMGADKKKKGGAV 103
>gb|AAF52596.1| (AE003619) CG7424 gene product [Drosophila melanogaster]
Length = 122
Score = 150 bits (376), Expect = 1e-35
Identities = 69/105 (65%), Positives = 81/105 (76%)
Frame = +3
Query: 42 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 221
VN+PK R T+CK +C+ H HKVTQYK K AQG+RRYDRKQ G+GGQTKP+F KK
Sbjct: 20 VNVPKQRRTFCK--KCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKK 77
Query: 222 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKGAALVF 356
AKTTKK+VLR+EC +CK + Q LKRCKHFELGGDKK KG + F
Sbjct: 78 AKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQMIQF 122
>emb|CAB11607.1| (Z98950) match: multiple proteins~match: CE02123 P90702 Q96499
P10661 P65027~match: P09896 P31866 P02405 P31028
P52809~match: Q00477 Q00494 P49213 P17843 P27076~match:
cDNAs M19635 M15661 AB000910~match: multiple ESTs~match:
T87328 T87321 AA181201 T411>
Length = 105
Score = 148 bits (371), Expect = 6e-35
Identities = 75/106 (70%), Positives = 86/106 (80%), Gaps = 2/106 (1%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN+PKTR T+CK +C K HKVTQYK A + AQGKR YDRKQSGYGGQTKP+F K
Sbjct: 1 MVNVPKTRRTFCK--KCGKRQPHKVTQYKK-VAMVPAQGKRCYDRKQSGYGGQTKPIFWK 57
Query: 219 KAKTTKKVVLRLECVK--CKTKLQLALKRCKHFELGGDKKTKGAALVF 356
KAKTTKK+VLRLECV+ C++K LA+KRCKHFELGGDKK KG + F
Sbjct: 58 KAKTTKKIVLRLECVEPNCRSKRTLAIKRCKHFELGGDKKRKGQVIQF 105
>sp|P17843|RL44_TRYBB 60S RIBOSOMAL PROTEIN L44
pir||R6UT6A ribosomal protein L36a.e - Trypanosoma brucei
emb|CAA36367.1| (X52122) ribosomal protein L44 (AA 1-106) [Trypanosoma brucei]
emb|CAB60089.1| (AJ250726) ribosomal protein L44 [Trypanosoma brucei]
Length = 106
Score = 143 bits (358), Expect = 2e-33
Identities = 65/99 (65%), Positives = 76/99 (76%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN PK + +C + C H KV QYKAGKA L+A+GKRRYDRKQSGYGGQTKP+FHK
Sbjct: 1 MVNYPKKKKMHCPDERCNAHKSFKVVQYKAGKARLYARGKRRYDRKQSGYGGQTKPIFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKT 335
KAKTTKK+VL+L+C CK+ +Q LKR KHFEL KKT
Sbjct: 61 KAKTTKKIVLKLQCSNCKSIIQNVLKRTKHFELNDKKKT 99
>gb|AAD31928.2|AF148853_1 (AF148853) 60S ribosomal protein L44 [Leishmania amazonensis]
Length = 106
Score = 141 bits (352), Expect = 1e-32
Identities = 68/101 (67%), Positives = 76/101 (74%)
Frame = +3
Query: 39 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHK 218
MVN PK + +C C H KV QYKAGKA LFA+GKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNYPKKKVMHCSDARCNAHKSFKVVQYKAGKARLFARGKRRYDRKQSGYGGQTKPVFHK 60
Query: 219 KAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKTKG 341
KAKTTKK+VL+L+C CK+ Q+ LKR KHFEL DKK G
Sbjct: 61 KAKTTKKIVLKLQCSGCKSIRQVVLKRTKHFEL-NDKKNTG 100
>dbj|BAA21971.1| (AB002709) ribosomal protein L44 [Entamoeba histolytica]
Length = 80
Score = 90.5 bits (221), Expect = 2e-17
Identities = 43/70 (61%), Positives = 49/70 (69%)
Frame = +3
Query: 93 KHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVKCK 272
KHT HKV QYK GK SL QGKRRYDRKQ G+GGQTKPVF KKAK ++ + ++EC KCK
Sbjct: 1 KHTPHKVFQYKKGKDSLHVQGKRRYDRKQQGFGGQTKPVFKKKAKQQRR-LFKIECTKCK 59
Query: 273 TKLQLALKRC 302
L C
Sbjct: 60 IAQSLRESTC 69
>sp|O27365|RL44_METTH 50S RIBOSOMAL PROTEIN L44E
pir||B69041 ribosomal protein L36a - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB85788.1| (AE000895) ribosomal protein L36a [Methanobacterium
thermoautotrophicum]
Length = 92
Score = 61.3 bits (146), Expect = 1e-08
Identities = 33/76 (43%), Positives = 45/76 (58%)
Frame = +3
Query: 42 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 221
+ IPK R TYC CRKHT H+V + K KAS G+R++ R +GY G +P+
Sbjct: 1 MKIPKERRTYCPN--CRKHTVHEVLESKRRKASELKWGQRQFRRVTAGYRGYPRPL-PSG 57
Query: 222 AKTTKKVVLRLECVKC 269
K KK+ LRL+C +C
Sbjct: 58 NKPVKKLDLRLKCKEC 73
>sp|O59603|RL44_PYRHO 50S RIBOSOMAL PROTEIN L44E
pir||D71209 probable ribosomal protein L44 - Pyrococcus horikoshii
dbj|BAA31067.1| (AP000007) 109aa long hypothetical 50S ribosomal protein L44
[Pyrococcus horikoshii]
Length = 109
Score = 59.7 bits (142), Expect = 4e-08
Identities = 38/104 (36%), Positives = 50/104 (47%), Gaps = 1/104 (0%)
Frame = +3
Query: 6 RHEAAPHIVVKMVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSG 185
R P VK + PK TYC C++HT HKV + K S + G+RR+ R G
Sbjct: 4 REPTGPGEEVKEMKYPKQIRTYCP--YCKRHTIHKVERVKRRPRSELSAGQRRFRRVLKG 61
Query: 186 YGGQTKPVFHKKAKTTKKVVLRLECVKC-KTKLQLALKRCKHFEL 317
YGG +P + K KK+ LR C C + + R K FEL
Sbjct: 62 YGGFPRPKPEGREKPVKKLDLRFVCTVCGRAHTRGKGFRVKRFEL 106
>sp|P54027|RL44_METJA 50S RIBOSOMAL PROTEIN L44E
pir||B64331 ribosomal protein L44 - Methanococcus jannaschii
gb|AAB98236.1| (U67480) LSU ribosomal protein L44E [Methanococcus jannaschii]
Length = 94
Score = 57.8 bits (137), Expect = 2e-07
Identities = 30/76 (39%), Positives = 44/76 (57%)
Frame = +3
Query: 42 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 221
+ IPK YC C+KHT H V + K GK S G+R++ R +GYGG +P+ +
Sbjct: 1 MKIPKKVRRYCP--YCKKHTIHIVEKAKKGKPSELTWGQRQFRRVTAGYGGFPRPL-PDR 57
Query: 222 AKTTKKVVLRLECVKC 269
+K KK+ LR +C +C
Sbjct: 58 SKPVKKIDLRFKCTEC 73
>pir||F75022 lsu ribosomal protein l44e (rpl44e) PAB1221 - Pyrococcus abyssi
(strain Orsay)
emb|CAB50620.1| (AJ248288) LSU ribosomal protein L44E (rpl44E) [Pyrococcus abyssi]
Length = 94
Score = 56.2 bits (133), Expect = 5e-07
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +3
Query: 51 PKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKT 230
PK TYC C++HT HKV + K S + G+RR+ R GYGG +P + K
Sbjct: 4 PKQIRTYCPF--CKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREKP 61
Query: 231 TKKVVLRLECVKC-KTKLQLALKRCKHFEL 317
KK+ LR C C K + R K FEL
Sbjct: 62 VKKLDLRFRCTVCGKAHTRGRGFRVKKFEL 91
>sp|Q9YF00|RL44_AERPE 50S RIBOSOMAL PROTEIN L44E
pir||H72737 probable ribosomal protein L44 APES016 - Aeropyrum pernix (strain
K1)
dbj|BAA79396.1| (AP000059) 63aa long hypothetical 50S ribosomal protein L44
[Aeropyrum pernix]
Length = 63
Score = 50.0 bits (117), Expect = 3e-05
Identities = 27/57 (47%), Positives = 31/57 (54%)
Frame = +3
Query: 147 AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVKCKTKLQLALKRCKHFEL 317
A G+RRY RKQ GYG Q +P + AK TKK VL + C C K R K EL
Sbjct: 2 ALGERRYRRKQEGYGSQRRPEQKRFAKVTKKQVLVITCTVCGRKRPFLGIRLKRLEL 58
>pir||S32479 hypothetical protein C - yeast (Kluyveromyces marxianus var.
lactis)
gb|AAA35263.1| (M94988) ORFC [Kluyveromyces lactis]
Length = 114
Score = 44.1 bits (102), Expect = 0.002
Identities = 29/72 (40%), Positives = 35/72 (48%)
Frame = -3
Query: 356 ENESSTLCLLVTTKLEVLASLQRQLELGLALDTLQSKDNXXXXXXXXXXXXXXXXXXXXX 177
E +S TL LL TT+ EVL SLQ QL LGL T QS+++
Sbjct: 9 ELQSLTLLLLFTTQFEVLTSLQSQLGLGLTGHTFQSQNDLLGSLSFLVENLLGLTTETRL 68
Query: 176 LAVISTLTLGEQ 141
VIS+LTL Q
Sbjct: 69 FTVISSLTLSVQ 80
>sp|O28936|RL44_ARCFU 50S RIBOSOMAL PROTEIN L44E
pir||D69416 LSU ribosomal protein L44E (rpl44E) homolog - Archaeoglobus
fulgidus
gb|AAB89909.1| (AE001011) LSU ribosomal protein L44E (rpl44E) [Archaeoglobus
fulgidus]
Length = 93
Score = 43.8 bits (101), Expect = 0.003
Identities = 32/89 (35%), Positives = 43/89 (47%), Gaps = 1/89 (1%)
Frame = +3
Query: 51 PKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRK-QSGYGGQTKPVFHKKAK 227
PK T+C+ C KHT H+V + GKAS R+ R+ + G G+ V K
Sbjct: 4 PKKVKTFCR--YCGKHTLHEVERVSKGKASSLNWINRQKKRRGKVGNLGKFSKV-PGGDK 60
Query: 228 TTKKVVLRLECVKCKTKLQLALKRCKHFEL 317
TK+V +R C +CK R K FEL
Sbjct: 61 PTKRVNIRFRCTECKKAHHRPTWRAKRFEL 90
>pir||T27644 hypothetical protein ZK1010.7 - Caenorhabditis elegans
emb|CAB04973.1| (Z82083) similar to collagen~cDNA EST yk120b8.5 comes from this
gene~cDNA EST EMBL:T00142 comes from this gene~cDNA EST
yk120b8.3 comes from this gene~cDNA EST yk524d12.3 comes
from this gene~cDNA EST yk524d12.5 comes from this
gene~cDNA EST yk428a12.3>
Length = 298
Score = 34.0 bits (76), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 737 GWPGNPRRPKGILFTLTGPWCTPCGSGKP 823
G PG P RP + +T P CTPC G+P
Sbjct: 124 GAPGFPGRPPAVCEEITEPPCTPCPPGEP 152
>gb|AAC62700.1| (AF083072) histone H1 DNA binding protein [Cenarchaeum symbiosum]
Length = 269
Score = 32.8 bits (73), Expect = 5.0
Identities = 27/102 (26%), Positives = 46/102 (44%)
Frame = +3
Query: 30 VVKMVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPV 209
+V+M N N GK RK K + K+GK ++ + +R K++G +T
Sbjct: 109 LVQMRNQLAEMNRKAPGKPARKKAAGKTARRKSGKKTVRRKTGKRTAGKKAGARRKTTVK 168
Query: 210 FHKKAKTTKKVVLRLECVKCKTKLQLALKRCKHFELGGDKKT 335
+ KTT K + K + + +KR H ++G +KT
Sbjct: 169 RTARRKTTAK---KAAGRKAGARRKATVKRTVHKKIGVRRKT 207
>dbj|BAB13390.1| (AB046784) KIAA1564 protein [Homo sapiens]
Length = 1417
Score = 32.5 bits (72), Expect = 6.5
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Frame = +3
Query: 180 SGYGGQTKPVFHKKAKTTKKVV-LRLECVKCKTKLQLALK-------RCKHFELGGDKKT 335
+G G P+FHKK KK+V L +EC++ L + L+ + L G+
Sbjct: 1109 NGVMGDGHPLFHKKKGNRKKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAP 1168
Query: 336 KGAALVF*VLCVWVSGSPFLCLPRRHLGIMDGHRRKE 446
+ A L +W+ G P + R L M+ R+++
Sbjct: 1169 RRAELE-----MWLQGHPEFAVDPRFLAYMEDRRKQK 1200
>pir||T19835 hypothetical protein C38D9.5 - Caenorhabditis elegans
emb|CAB03951.1| (Z81481) C38D9.5 [Caenorhabditis elegans]
emb|CAB07494.1| (Z92973) C38D9.5 [Caenorhabditis elegans]
Length = 1213
Score = 32.1 bits (71), Expect = 8.6
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 6/70 (8%)
Frame = +3
Query: 60 RNTYCKGKECRKHTQH---KVTQYKAGKASLF---AQGKRRYDRKQSGYGGQTKPVFHKK 221
RN Y K+C K+ + KV +K L AQGK +Y YG TK + + +
Sbjct: 843 RNNYGAFKKCLKNGAYVNAKVQSHKQSNTMLHECVAQGKTKYIETLIKYGATTK-ILNHE 901
Query: 222 AKTTKKVVLRLECVKC 269
+T + R++ KC
Sbjct: 902 GETPYDIAKRMKKTKC 917
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301491989
Number of Sequences: 565281
Number of extensions: 6824948
Number of successful extensions: 17609
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17547
Number of HSP's gapped (non-prelim): 47
length of query: 291
length of database: 177,575,912
effective HSP length: 54
effective length of query: 236
effective length of database: 147,050,738
effective search space: 34703974168
effective search space used: 34703974168
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)