Score E
Sequences producing significant alignments: (bits) Value
sp|P52809|RL44_PICJA 60S RIBOSOMAL PROTEIN L44 (L41) >gi|12... 192 5e-48
pir||S63114 ribosomal protein L36a.e.c14, cytosolic - yeast... 191 9e-48
gb|AAF21253.1|AF053457_1 (AF053457) ribosomal protein L41 [... 190 1e-47
sp|P31866|RL44_PICGU 60S RIBOSOMAL PROTEIN L44 (L41) >gi|21... 188 8e-47
ref|NP_012010.1| Ribosomal protein L42B (YL27) (L41B) (YP44... 188 8e-47
emb|CAA63277.1| (X92517) orf [Saccharomyces cerevisiae] 188 8e-47
sp|Q00477|R44P_CANMA 60S RIBOSOMAL PROTEIN L44 P (L41) (L41... 186 2e-46
sp|P31028|RL44_DEBOC 60S RIBOSOMAL PROTEIN L44 (L41) >gi|47... 184 1e-45
sp|P31027|RL44_KLULA 60S RIBOSOMAL PROTEIN L44 (L41) >gi|42... 183 2e-45
dbj|BAA74505.1| (AB008095) ribosomal protein L41 [Candida m... 182 3e-45
sp|P27076|RL44_KLUMA 60S RIBOSOMAL PROTEIN L44 (L41) >gi|28... 181 8e-45
dbj|BAA83465.1| (AB021315) L41 ribosomal protein [Coprinus ... 176 3e-44
sp|O59870|RL44_PHARH 60S RIBOSOMAL PROTEIN L44 (L41) >gi|31... 175 7e-44
sp|P27075|RL44_CANTR 60S RIBOSOMAL PROTEIN L44 (L41) >gi|28... 176 2e-43
sp|P27074|R44Q_CANMA 60S RIBOSOMAL PROTEIN L44 Q (L41) (L41... 175 4e-43
dbj|BAA07784.1| (D43687) L41 ribosomal protein [Candida mal... 174 1e-42
dbj|BAA07783.1| (D43686) L41 ribosomal protein [Candida mal... 172 5e-42
pir||T37718 60s ribosomal protein l44 - fission yeast (Schi... 165 2e-40
sp|O23290|RL44_ARATH 60S RIBOSOMAL PROTEIN L44 >gi|7440769|... 164 9e-40
sp|Q96499|RL44_GOSHI 60S RIBOSOMAL PROTEIN L44 >gi|2119128|... 162 4e-39
gb|AAA34366.1| (M62396) ribosomal protein L41 [Candida malt... 161 1e-38
sp|P48166|RL44_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L44 >gi... 157 1e-37
ref|NP_063918.1| ribosomal protein L44 >gi|2815502|sp|P0989... 153 3e-36
emb|CAB55877.1| (AL035422) dJ164F3.3 (ribosomal protein L44... 153 3e-36
ref|NP_000992.1| ribosomal protein L36a >gi|71186|pir||R6HU... 152 6e-36
sp|P49213|RL44_CHLRE 60S RIBOSOMAL PROTEIN L44 (L41) >gi|74... 151 8e-36
sp|P90702|RL44_BRUMA 60S RIBOSOMAL PROTEIN L44 >gi|1813690|... 151 1e-35
gb|AAF87576.1|AF271208_1 (AF271208) putative large subunit ... 138 8e-32
sp|O97231|RL44_PLAFA 60S RIBOSOMAL PROTEIN L44 >gi|4493887|... 138 1e-31
gb|AAF52596.1| (AE003619) CG7424 gene product [Drosophila m... 136 2e-31
sp|P17843|RL44_TRYBB 60S RIBOSOMAL PROTEIN L44 >gi|71189|pi... 136 2e-31
gb|AAD31928.2|AF148853_1 (AF148853) 60S ribosomal protein L... 136 3e-31
emb|CAB11607.1| (Z98950) match: multiple proteins~match: CE... 132 5e-30
dbj|BAA21971.1| (AB002709) ribosomal protein L44 [Entamoeba... 90 2e-17
sp|O27365|RL44_METTH 50S RIBOSOMAL PROTEIN L44E >gi|7447257... 61 1e-08
sp|P54027|RL44_METJA 50S RIBOSOMAL PROTEIN L44E >gi|2129258... 58 2e-07
sp|O59603|RL44_PYRHO 50S RIBOSOMAL PROTEIN L44E >gi|7447256... 58 2e-07
pir||F75022 lsu ribosomal protein l44e (rpl44e) PAB1221 - P... 56 4e-07
sp|Q9YF00|RL44_AERPE 50S RIBOSOMAL PROTEIN L44E >gi|7521377... 50 3e-05
sp|O28936|RL44_ARCFU 50S RIBOSOMAL PROTEIN L44E >gi|7447255... 44 0.003
ref|NP_034916.1| transformed mouse 3T3 cell double minute 2... 34 2.2
sp|P23804|MDM2_MOUSE UBIQUITIN-PROTEIN LIGASE E3 MDM2 (P53-... 34 2.2
pir||S32479 hypothetical protein C - yeast (Kluyveromyces m... 34 2.2
pir||S15349 mdm2 protein - mouse >gi|53039|emb|CAA41684.1| ... 34 2.8
pir||T19835 hypothetical protein C38D9.5 - Caenorhabditis e... 32 8.3
>sp|P52809|RL44_PICJA 60S RIBOSOMAL PROTEIN L44 (L41)
dbj|BAA11057.1| (D67040) ribosomal protein L41 [Candida utilis]
Length = 106
Score = 192 bits (482), Expect = 5e-48
Identities = 89/93 (95%), Positives = 90/93 (96%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2 VNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLECV CKTK QLALKRCKHFELG
Sbjct: 62 AKTTKKVVLRLECVVCKTKAQLALKRCKHFELG 94
>pir||S63114 ribosomal protein L36a.e.c14, cytosolic - yeast (Saccharomyces
cerevisiae)
emb|CAA96049.1| (Z71438) ORF YNL162w [Saccharomyces cerevisiae]
Length = 116
Score = 191 bits (480), Expect = 9e-48
Identities = 89/104 (85%), Positives = 93/104 (88%)
Frame = -1
Query: 622 MTRWLTLWIQQVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGY 443
M R L + VN+PKTR TYCKGK CRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSG+
Sbjct: 1 MVRCLIYFFYLVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGF 60
Query: 442 GGQTKPVFHKKAKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
GGQTKPVFHKKAKTTKKVVLRLECVKCKT+ QL LKRCKHFELG
Sbjct: 61 GGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELG 104
>gb|AAF21253.1|AF053457_1 (AF053457) ribosomal protein L41 [Pichia ciferrii]
Length = 106
Score = 190 bits (479), Expect = 1e-47
Identities = 88/93 (94%), Positives = 90/93 (96%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2 VNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLECV CKTK QL+LKRCKHFELG
Sbjct: 62 AKTTKKVVLRLECVVCKTKAQLSLKRCKHFELG 94
>sp|P31866|RL44_PICGU 60S RIBOSOMAL PROTEIN L44 (L41)
dbj|BAA01017.1| (D10153) ribosomal protein L41 [Pichia guilliermondii]
gb|AAA35356.1| (M62395) ribosomal protein L41 [Pichia sp.]
Length = 103
Score = 188 bits (472), Expect = 8e-47
Identities = 86/93 (92%), Positives = 90/93 (96%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKGK+CRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSG+GGQTKPVFHKK
Sbjct: 2 VNVPKTRRTYCKGKDCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLECV CKTK QL+LKRCKHFELG
Sbjct: 62 AKTTKKVVLRLECVVCKTKAQLSLKRCKHFELG 94
>ref|NP_012010.1| Ribosomal protein L42B (YL27) (L41B) (YP44); Rpl42bp
ref|NP_014237.2| Ribosomal protein L42A (YL27) (L41A); Rpl42ap
sp|P02405|RL44_YEAST 60S RIBOSOMAL PROTEIN L42 (L44) (YL27) (YP44) (L41)
pir||R6BY44 ribosomal protein L36a.e.c8, cytosolic - yeast (Saccharomyces
cerevisiae)
gb|AAA34927.1| (M62391) ribosomal protein L41 [Saccharomyces cerevisiae]
gb|AAA34928.1| (M62392) ribosomal protein L41 [Saccharomyces cerevisiae]
dbj|BAA01435.1| (D10578) ribosomal protein L41a [Saccharomyces cerevisiae]
dbj|BAA01436.1| (D10579) ribosomal protein L41b [Saccharomyces cerevisiae]
gb|AAB68420.1|AAB68420 (U10398) Mak18p: ribosomal protein [Saccharomyces cerevisiae]
Length = 106
Score = 188 bits (472), Expect = 8e-47
Identities = 86/93 (92%), Positives = 89/93 (95%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKGK CRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSG+GGQTKPVFHKK
Sbjct: 2 VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLECVKCKT+ QL LKRCKHFELG
Sbjct: 62 AKTTKKVVLRLECVKCKTRAQLTLKRCKHFELG 94
>emb|CAA63277.1| (X92517) orf [Saccharomyces cerevisiae]
Length = 105
Score = 188 bits (472), Expect = 8e-47
Identities = 86/93 (92%), Positives = 89/93 (95%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKGK CRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSG+GGQTKPVFHKK
Sbjct: 1 VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK 60
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLECVKCKT+ QL LKRCKHFELG
Sbjct: 61 AKTTKKVVLRLECVKCKTRAQLTLKRCKHFELG 93
>sp|Q00477|R44P_CANMA 60S RIBOSOMAL PROTEIN L44 P (L41) (L41 P-TYPE)
dbj|BAA07782.1| (D43686) L41 ribosomal protein [Candida maltosa]
Length = 106
Score = 186 bits (468), Expect = 2e-46
Identities = 85/93 (91%), Positives = 90/93 (96%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKG+ECRKH+QHKVTQYKAGK+SLFAQGKRRYDRKQSG+GGQTKPVFHKK
Sbjct: 2 VNVPKTRKTYCKGRECRKHSQHKVTQYKAGKSSLFAQGKRRYDRKQSGFGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLECV CKTK QLALKRCKHFELG
Sbjct: 62 AKTTKKVVLRLECVVCKTKAQLALKRCKHFELG 94
>sp|P31028|RL44_DEBOC 60S RIBOSOMAL PROTEIN L44 (L41)
pir||S32481 ribosomal protein L36a.e, cytosolic - yeast (Schwanniomyces
occidentalis)
emb|CAA50074.1| (X70807) ribosomal protein L41 [Debaryomyces occidentalis]
Length = 106
Score = 184 bits (462), Expect = 1e-45
Identities = 84/93 (90%), Positives = 88/93 (94%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQ GYGGQTK +FHKK
Sbjct: 2 VNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQRGYGGQTKQIFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVL+LECV CKTK QL+LKRCKHFELG
Sbjct: 62 AKTTKKVVLKLECVVCKTKAQLSLKRCKHFELG 94
>sp|P31027|RL44_KLULA 60S RIBOSOMAL PROTEIN L44 (L41)
pir||S32478 ribosomal protein L36a.e - yeast (Kluyveromyces marxianus var.
lactis)
gb|AAA35262.1| (M94988) ribosomal protein [Kluyveromyces lactis]
Length = 106
Score = 183 bits (460), Expect = 2e-45
Identities = 83/93 (89%), Positives = 88/93 (94%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKGKECRKH QHKVTQYKAGKASL+AQGKRRYDRKQSG+GGQTK +FHKK
Sbjct: 2 VNVPKTRKTYCKGKECRKHAQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLEC+ CKTK QLALKRCKHFELG
Sbjct: 62 AKTTKKVVLRLECMSCKTKTQLALKRCKHFELG 94
>dbj|BAA74505.1| (AB008095) ribosomal protein L41 [Candida maltosa]
Length = 106
Score = 182 bits (458), Expect = 3e-45
Identities = 83/93 (89%), Positives = 88/93 (94%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR T+CKGKECRKHTQHKVTQYKAGKASL+AQGKRRYDRKQSGYGGQTK +FHKK
Sbjct: 2 VNVPKTRKTFCKGKECRKHTQHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKQIFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVL+LEC CKTK QLALKRCKHFELG
Sbjct: 62 AKTTKKVVLKLECTVCKTKKQLALKRCKHFELG 94
>sp|P27076|RL44_KLUMA 60S RIBOSOMAL PROTEIN L44 (L41)
pir||E43301 ribosomal protein L36a.e, cytosolic - yeast (Kluyveromyces
marxianus var. marxianus)
gb|AAA35268.1| (M62394) ribosomal protein L41 [Kluyveromyces marxianus]
dbj|BAA01437.1| (D10580) ribosomal protein L41 [Kluyveromyces marxianus]
Length = 106
Score = 181 bits (455), Expect = 8e-45
Identities = 82/93 (88%), Positives = 88/93 (94%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKGK CRKH+QHKVTQYKAGKASL+AQGKRRYDRKQSG+GGQTK +FHKK
Sbjct: 2 VNVPKTRKTYCKGKACRKHSQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLEC+ CKTK QLALKRCKHFELG
Sbjct: 62 AKTTKKVVLRLECMSCKTKTQLALKRCKHFELG 94
>dbj|BAA83465.1| (AB021315) L41 ribosomal protein [Coprinus cinereus]
Length = 106
Score = 176 bits (441), Expect(2) = 3e-44
Identities = 80/93 (86%), Positives = 85/93 (91%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VNIPKTR TYCKGK C+KHT HKVTQYK GK S+FAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2 VNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLEC CK K+Q++LKRCKHFELG
Sbjct: 62 AKTTKKVVLRLECTVCKYKMQVSLKRCKHFELG 94
Score = 25.1 bits (53), Expect(2) = 3e-44
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = -3
Query: 266 DYSGDKKTKGAALVF 222
+ G+KKTKGAAL F
Sbjct: 92 ELGGEKKTKGAALTF 106
>sp|O59870|RL44_PHARH 60S RIBOSOMAL PROTEIN L44 (L41)
gb|AAC39456.1| (AF004672) ribosomal protein L41 [Phaffia rhodozyma]
Length = 106
Score = 175 bits (438), Expect(2) = 7e-44
Identities = 79/93 (84%), Positives = 84/93 (89%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYCKGK C+KHT HKVTQYK GK S+FAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2 VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKKVVLRLEC CK K+Q+ LKRCKHFELG
Sbjct: 62 AKTTKKVVLRLECSVCKYKMQMTLKRCKHFELG 94
Score = 25.1 bits (53), Expect(2) = 7e-44
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = -3
Query: 266 DYSGDKKTKGAALVF 222
+ GDKKTKGAA+ F
Sbjct: 92 ELGGDKKTKGAAISF 106
>sp|P27075|RL44_CANTR 60S RIBOSOMAL PROTEIN L44 (L41)
pir||D43301 ribosomal protein L36a.e, cytosolic - yeast (Candida tropicalis)
gb|AAA34365.1| (M62393) ribosomal protein L41 [Candida tropicalis]
dbj|BAA01438.1| (D10581) ribosomal protein L41 [Candida tropicalis]
Length = 106
Score = 176 bits (443), Expect = 2e-43
Identities = 82/93 (88%), Positives = 85/93 (91%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VNIPKTRNTYCKGK CRKHT HKVTQYKAG+ASLFAQGKRRYDRKQSGYGGQTK VFHKK
Sbjct: 2 VNIPKTRNTYCKGKGCRKHTIHKVTQYKAGRASLFAQGKRRYDRKQSGYGGQTKQVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VL+LEC CKTK QL LKRCKH ELG
Sbjct: 62 AKTTKKIVLKLECTVCKTKKQLPLKRCKHIELG 94
>sp|P27074|R44Q_CANMA 60S RIBOSOMAL PROTEIN L44 Q (L41) (L41 Q-TYPE)
pir||A43301 ribosomal protein L36a.e, cytosolic - yeast (Candida maltosa)
gb|AAA34364.1| (M62390) ribosomal protein L41 [Candida maltosa]
dbj|BAA01434.1| (D10577) ribosomal protein L41 [Candida maltosa]
Length = 106
Score = 175 bits (440), Expect = 4e-43
Identities = 81/93 (87%), Positives = 85/93 (91%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VNIPKTRNTYCKGK CRKHT HKVTQYK+G+ASLFAQGKRRYDRKQSGYGGQTK VFHKK
Sbjct: 2 VNIPKTRNTYCKGKGCRKHTIHKVTQYKSGRASLFAQGKRRYDRKQSGYGGQTKQVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VL+LEC CKTK QL LKRCKH ELG
Sbjct: 62 AKTTKKIVLKLECTVCKTKKQLPLKRCKHIELG 94
>dbj|BAA07784.1| (D43687) L41 ribosomal protein [Candida maltosa]
Length = 98
Score = 174 bits (437), Expect = 1e-42
Identities = 80/85 (94%), Positives = 83/85 (97%)
Frame = -1
Query: 565 TYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVV 386
TYCKG+ECRKHTQHKVTQYKAGK+SLFAQGKRRYDRKQSG+GGQTKPVFHKKAKTTKKVV
Sbjct: 2 TYCKGRECRKHTQHKVTQYKAGKSSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVV 61
Query: 385 LRLECVKCKTKLQLALKRCKHFELG 311
LRLECV CKTK QLALKRCKHFELG
Sbjct: 62 LRLECVVCKTKAQLALKRCKHFELG 86
>dbj|BAA07783.1| (D43686) L41 ribosomal protein [Candida maltosa]
Length = 106
Score = 172 bits (431), Expect = 5e-42
Identities = 80/93 (86%), Positives = 83/93 (89%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VNIPKTRNTYCKGK CRKHT HKVTQYKAG+ASLFAQG RRYDRKQSGYGGQTK VFHK
Sbjct: 2 VNIPKTRNTYCKGKGCRKHTIHKVTQYKAGRASLFAQGXRRYDRKQSGYGGQTKQVFHKX 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VL+LEC CKTK QL LKRCKH ELG
Sbjct: 62 AKTTKKIVLKLECTVCKTKKQLPLKRCKHIELG 94
>pir||T37718 60s ribosomal protein l44 - fission yeast (Schizosaccharomyces
pombe)
emb|CAB52422.1| (AL109770) 60s ribosomal protein l44 [Schizosaccharomyces pombe]
Length = 106
Score = 165 bits (413), Expect(2) = 2e-40
Identities = 77/93 (82%), Positives = 79/93 (84%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VNIPKTR TYC GK CRKHT H+VTQYK G S AQGKRRYDRKQSG+GGQTKPVFHKK
Sbjct: 2 VNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AK TKKVVLRLECV CK K QL LKRCKHFELG
Sbjct: 62 AKVTKKVVLRLECVSCKYKNQLVLKRCKHFELG 94
Score = 23.5 bits (49), Expect(2) = 2e-40
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 266 DYSGDKKTKGAALVF 222
+ G+KKTKGAA+ F
Sbjct: 92 ELGGEKKTKGAAIQF 106
>sp|O23290|RL44_ARATH 60S RIBOSOMAL PROTEIN L44
pir||A71405 ribosomal protein L36a.e, cytosolic - Arabidopsis thaliana
emb|CAB10211.1| (Z97336) ribosomal protein [Arabidopsis thaliana]
emb|CAB78474.1| (AL161538) ribosomal protein [Arabidopsis thaliana]
dbj|BAA99967.1| (AB015474) 60S ribosomal protein L44-like [Arabidopsis thaliana]
Length = 105
Score = 164 bits (412), Expect = 9e-40
Identities = 75/93 (80%), Positives = 81/93 (86%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VNIPKT+NTYCK KEC+KHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2 VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VLRL+C CK Q +KRCKHFE+G
Sbjct: 62 AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIG 94
>sp|Q96499|RL44_GOSHI 60S RIBOSOMAL PROTEIN L44
pir||JC4923 ribosomal protein L36a.e, cytosolic - upland cotton
gb|AAB08726.1| (U64677) ribosomal protein L44 isoform a [Gossypium hirsutum]
gb|AAB08727.1| (U64678) ribosomal protein L44 isoform b [Gossypium hirsutum]
Length = 105
Score = 162 bits (406), Expect = 4e-39
Identities = 74/93 (79%), Positives = 80/93 (85%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKT+ TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VLRL+C CK Q +KRCKHFE+G
Sbjct: 62 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIG 94
>gb|AAA34366.1| (M62396) ribosomal protein L41 [Candida maltosa]
Length = 105
Score = 161 bits (403), Expect = 1e-38
Identities = 73/93 (78%), Positives = 80/93 (85%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKT+ TYCK KEC+KHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VLRL+C CK Q +KRCKHFE+G
Sbjct: 62 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIG 94
>sp|P48166|RL44_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L44
pir||T19159 hypothetical protein C09H10.2 - Caenorhabditis elegans
emb|CAA90434.1| (Z50109) similar to 60S ribosomal protein~cDNA EST EMBL:T01767
comes from this gene~cDNA EST yk104e2.5 comes from this
gene~cDNA EST yk205a12.3 comes from this gene~cDNA EST
yk205a12.5 comes from this gene~cDNA EST yk370a1.3 comes
from this gene~cDNA E>
Length = 105
Score = 157 bits (394), Expect = 1e-37
Identities = 71/93 (76%), Positives = 80/93 (85%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PK R T+C GK CRKHT HKVTQYK GK S FAQG+RRYDRKQSG+GGQTKP+F KK
Sbjct: 2 VNVPKARRTFCDGK-CRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VLR+EC +CK K QL +KRCKHFELG
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELG 93
>ref|NP_063918.1| ribosomal protein L44
sp|P09896|RL44_HUMAN 60S RIBOSOMAL PROTEIN L44 (L36A)
pir||R6RT36 ribosomal protein L36a - rat
gb|AAB54277.1| (M19635) ribosomal protein L36a [Rattus norvegicus]
gb|AAB47245.1| (U58105) ribosomal protein [Mus musculus]
gb|AAB64204.1| (U78027) L44-like ribosomal protein [Homo sapiens]
dbj|BAA19210.1| (AB000910) ribosomal protein [Sus scrofa]
Length = 106
Score = 153 bits (382), Expect = 3e-36
Identities = 72/93 (77%), Positives = 82/93 (87%), Gaps = 2/93 (2%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR T+CK +C KH HKVTQYK GK SL+AQGKRRYDRKQSGYGGQTKP+F KK
Sbjct: 2 VNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKK 59
Query: 409 AKTTKKVVLRLECVK--CKTKLQLALKRCKHFELG 311
AKTTKK+VLRLECV+ C++K LA+KRCKHFELG
Sbjct: 60 AKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELG 94
>emb|CAB55877.1| (AL035422) dJ164F3.3 (ribosomal protein L44) [Homo sapiens]
Length = 99
Score = 153 bits (382), Expect = 3e-36
Identities = 72/93 (77%), Positives = 82/93 (87%), Gaps = 2/93 (2%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR T+CK +C KH HKVTQYK GK SL+AQGKRRYDRKQSGYGGQTKP+F KK
Sbjct: 1 VNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKK 58
Query: 409 AKTTKKVVLRLECVK--CKTKLQLALKRCKHFELG 311
AKTTKK+VLRLECV+ C++K LA+KRCKHFELG
Sbjct: 59 AKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELG 93
>ref|NP_000992.1| ribosomal protein L36a
pir||R6HU36 ribosomal protein L36a - human
gb|AAA36589.1| (M15661) ribosomal protein [Homo sapiens]
Length = 106
Score = 152 bits (379), Expect = 6e-36
Identities = 71/93 (76%), Positives = 82/93 (87%), Gaps = 2/93 (2%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR T+CK +C KH HKVTQYK GK SL+AQG+RRYDRKQSGYGGQTKP+F KK
Sbjct: 2 VNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKK 59
Query: 409 AKTTKKVVLRLECVK--CKTKLQLALKRCKHFELG 311
AKTTKK+VLRLECV+ C++K LA+KRCKHFELG
Sbjct: 60 AKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELG 94
>sp|P49213|RL44_CHLRE 60S RIBOSOMAL PROTEIN L44 (L41)
pir||T08060 ribosomal protein L36a - Chlamydomonas reinhardtii
gb|AAB08435.1| (U31912) ribosomal protein L41 [Chlamydomonas reinhardtii]
gb|AAD22491.1|AF130727_1 (AF130727) 80S ribosomal protein L41 [Chlamydomonas reinhardtii]
Length = 99
Score = 151 bits (378), Expect = 8e-36
Identities = 68/93 (73%), Positives = 78/93 (83%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKT+ +CKG C+KH KVTQYK GKASL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2 VNVPKTKRAFCKG--CKKHMMMKVTQYKTGKASLYAQGKRRYDRKQSGYGGQTKPVFHKK 59
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VLR++C +CK LKRCKHFE+G
Sbjct: 60 AKTTKKIVLRMQCQECKQTCMKGLKRCKHFEIG 92
>sp|P90702|RL44_BRUMA 60S RIBOSOMAL PROTEIN L44
gb|AAC47627.1| (U80976) ribosomal protein L44 [Brugia malayi]
Length = 105
Score = 151 bits (377), Expect = 1e-35
Identities = 67/93 (72%), Positives = 78/93 (83%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR T+C GK CR+HT HKVTQYK GK S AQG+RRYD KQ G+GGQTKP+F KK
Sbjct: 2 VNVPKTRRTFCDGK-CRRHTMHKVTQYKKGKESRLAQGRRRYDSKQKGFGGQTKPIFRKK 60
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VLR+EC +CK + QL +KRCKHFELG
Sbjct: 61 AKTTKKIVLRMECTECKHRKQLPIKRCKHFELG 93
>gb|AAF87576.1|AF271208_1 (AF271208) putative large subunit ribosomal protein rpL44 [Aedes
triseriatus]
Length = 104
Score = 138 bits (344), Expect = 8e-32
Identities = 63/93 (67%), Positives = 73/93 (77%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PK R TYCK +C+ H HKVTQYK K +QG+RRYDRKQ G+GGQTKP+F KK
Sbjct: 2 VNVPKQRRTYCK--KCKVHRVHKVTQYKKSKERKASQGRRRYDRKQKGFGGQTKPIFRKK 59
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VLR+ECV CK + Q LKRCKHFELG
Sbjct: 60 AKTTKKIVLRMECVDCKYRKQTPLKRCKHFELG 92
>sp|O97231|RL44_PLAFA 60S RIBOSOMAL PROTEIN L44
emb|CAB38996.1| (AL034558) predicted using hexExon; MAL3P2.9 (PFC0200w), 60S
Ribosomal protein L44, len: 105aa; Similarity to
ribosomal protein L44. S.cerevisiae 60S ribosomal
protein L44 (SW:RL44_YEAST) BLAST Score: 385, sum P(1) =
6.9e-36; 68% identity in 103 aa ove>
Length = 104
Score = 138 bits (343), Expect = 1e-31
Identities = 63/93 (67%), Positives = 73/93 (77%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR TYC K C+KHT HKV+QYK GK L + G+RRYD KQ G+GGQTKPVF KK
Sbjct: 2 VNVPKTRKTYCSNK-CKKHTMHKVSQYKKGKERLSSLGRRRYDMKQKGFGGQTKPVFKKK 60
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VL+LEC KCK K +KRCK FE+G
Sbjct: 61 AKTTKKIVLKLECTKCKKKRFQTMKRCKTFEMG 93
>gb|AAF52596.1| (AE003619) CG7424 gene product [Drosophila melanogaster]
Length = 122
Score = 136 bits (340), Expect = 2e-31
Identities = 62/93 (66%), Positives = 73/93 (77%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PK R T+CK +C+ H HKVTQYK K AQG+RRYDRKQ G+GGQTKP+F KK
Sbjct: 20 VNVPKQRRTFCK--KCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKK 77
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELG 311
AKTTKK+VLR+EC +CK + Q LKRCKHFELG
Sbjct: 78 AKTTKKIVLRMECTECKYRKQTPLKRCKHFELG 110
>sp|P17843|RL44_TRYBB 60S RIBOSOMAL PROTEIN L44
pir||R6UT6A ribosomal protein L36a.e - Trypanosoma brucei
emb|CAA36367.1| (X52122) ribosomal protein L44 (AA 1-106) [Trypanosoma brucei]
emb|CAB60089.1| (AJ250726) ribosomal protein L44 [Trypanosoma brucei]
Length = 106
Score = 136 bits (340), Expect = 2e-31
Identities = 61/92 (66%), Positives = 72/92 (77%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN PK + +C + C H KV QYKAGKA L+A+GKRRYDRKQSGYGGQTKP+FHKK
Sbjct: 2 VNYPKKKKMHCPDERCNAHKSFKVVQYKAGKARLYARGKRRYDRKQSGYGGQTKPIFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFEL 314
AKTTKK+VL+L+C CK+ +Q LKR KHFEL
Sbjct: 62 AKTTKKIVLKLQCSNCKSIIQNVLKRTKHFEL 93
>gb|AAD31928.2|AF148853_1 (AF148853) 60S ribosomal protein L44 [Leishmania amazonensis]
Length = 106
Score = 136 bits (339), Expect = 3e-31
Identities = 64/97 (65%), Positives = 72/97 (73%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN PK + +C C H KV QYKAGKA LFA+GKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2 VNYPKKKVMHCSDARCNAHKSFKVVQYKAGKARLFARGKRRYDRKQSGYGGQTKPVFHKK 61
Query: 409 AKTTKKVVLRLECVKCKTKLQLALKRCKHFELGYVNN 299
AKTTKK+VL+L+C CK+ Q+ LKR KHFEL N
Sbjct: 62 AKTTKKIVLKLQCSGCKSIRQVVLKRTKHFELNDKKN 98
>emb|CAB11607.1| (Z98950) match: multiple proteins~match: CE02123 P90702 Q96499
P10661 P65027~match: P09896 P31866 P02405 P31028
P52809~match: Q00477 Q00494 P49213 P17843 P27076~match:
cDNAs M19635 M15661 AB000910~match: multiple ESTs~match:
T87328 T87321 AA181201 T411>
Length = 105
Score = 132 bits (329), Expect = 5e-30
Identities = 67/93 (72%), Positives = 77/93 (82%), Gaps = 2/93 (2%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
VN+PKTR T+CK +C K HKVTQYK A + AQGKR YDRKQSGYGGQTKP+F KK
Sbjct: 2 VNVPKTRRTFCK--KCGKRQPHKVTQYKK-VAMVPAQGKRCYDRKQSGYGGQTKPIFWKK 58
Query: 409 AKTTKKVVLRLECVK--CKTKLQLALKRCKHFELG 311
AKTTKK+VLRLECV+ C++K LA+KRCKHFELG
Sbjct: 59 AKTTKKIVLRLECVEPNCRSKRTLAIKRCKHFELG 93
>dbj|BAA21971.1| (AB002709) ribosomal protein L44 [Entamoeba histolytica]
Length = 80
Score = 90.5 bits (221), Expect = 2e-17
Identities = 43/70 (61%), Positives = 49/70 (69%)
Frame = -1
Query: 538 KHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVKCK 359
KHT HKV QYK GK SL QGKRRYDRKQ G+GGQTKPVF KKAK ++ + ++EC KCK
Sbjct: 1 KHTPHKVFQYKKGKDSLHVQGKRRYDRKQQGFGGQTKPVFKKKAKQQRR-LFKIECTKCK 59
Query: 358 TKLQLALKRC 329
L C
Sbjct: 60 IAQSLRESTC 69
>sp|O27365|RL44_METTH 50S RIBOSOMAL PROTEIN L44E
pir||B69041 ribosomal protein L36a - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB85788.1| (AE000895) ribosomal protein L36a [Methanobacterium
thermoautotrophicum]
Length = 92
Score = 61.3 bits (146), Expect = 1e-08
Identities = 33/76 (43%), Positives = 45/76 (58%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
+ IPK R TYC CRKHT H+V + K KAS G+R++ R +GY G +P+
Sbjct: 1 MKIPKERRTYCPN--CRKHTVHEVLESKRRKASELKWGQRQFRRVTAGYRGYPRPL-PSG 57
Query: 409 AKTTKKVVLRLECVKC 362
K KK+ LRL+C +C
Sbjct: 58 NKPVKKLDLRLKCKEC 73
>sp|P54027|RL44_METJA 50S RIBOSOMAL PROTEIN L44E
pir||B64331 ribosomal protein L44 - Methanococcus jannaschii
gb|AAB98236.1| (U67480) LSU ribosomal protein L44E [Methanococcus jannaschii]
Length = 94
Score = 57.8 bits (137), Expect = 2e-07
Identities = 30/76 (39%), Positives = 44/76 (57%)
Frame = -1
Query: 589 VNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKK 410
+ IPK YC C+KHT H V + K GK S G+R++ R +GYGG +P+ +
Sbjct: 1 MKIPKKVRRYCP--YCKKHTIHIVEKAKKGKPSELTWGQRQFRRVTAGYGGFPRPL-PDR 57
Query: 409 AKTTKKVVLRLECVKC 362
+K KK+ LR +C +C
Sbjct: 58 SKPVKKIDLRFKCTEC 73
>sp|O59603|RL44_PYRHO 50S RIBOSOMAL PROTEIN L44E
pir||D71209 probable ribosomal protein L44 - Pyrococcus horikoshii
dbj|BAA31067.1| (AP000007) 109aa long hypothetical 50S ribosomal protein L44
[Pyrococcus horikoshii]
Length = 109
Score = 57.8 bits (137), Expect = 2e-07
Identities = 34/95 (35%), Positives = 49/95 (50%), Gaps = 1/95 (1%)
Frame = -1
Query: 598 IQQVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVF 419
++++ PK TYC C++HT HKV + K S + G+RR+ R GYGG +P
Sbjct: 13 VKEMKYPKQIRTYCP--YCKRHTIHKVERVKRRPRSELSAGQRRFRRVLKGYGGFPRPKP 70
Query: 418 HKKAKTTKKVVLRLECVKC-KTKLQLALKRCKHFEL 314
+ K KK+ LR C C + + R K FEL
Sbjct: 71 EGREKPVKKLDLRFVCTVCGRAHTRGKGFRVKRFEL 106
>pir||F75022 lsu ribosomal protein l44e (rpl44e) PAB1221 - Pyrococcus abyssi
(strain Orsay)
emb|CAB50620.1| (AJ248288) LSU ribosomal protein L44E (rpl44E) [Pyrococcus abyssi]
Length = 94
Score = 56.2 bits (133), Expect = 4e-07
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = -1
Query: 580 PKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKT 401
PK TYC C++HT HKV + K S + G+RR+ R GYGG +P + K
Sbjct: 4 PKQIRTYCPF--CKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREKP 61
Query: 400 TKKVVLRLECVKC-KTKLQLALKRCKHFEL 314
KK+ LR C C K + R K FEL
Sbjct: 62 VKKLDLRFRCTVCGKAHTRGRGFRVKKFEL 91
>sp|Q9YF00|RL44_AERPE 50S RIBOSOMAL PROTEIN L44E
pir||H72737 probable ribosomal protein L44 APES016 - Aeropyrum pernix (strain
K1)
dbj|BAA79396.1| (AP000059) 63aa long hypothetical 50S ribosomal protein L44
[Aeropyrum pernix]
Length = 63
Score = 50.0 bits (117), Expect = 3e-05
Identities = 27/57 (47%), Positives = 31/57 (54%)
Frame = -1
Query: 484 AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVKCKTKLQLALKRCKHFEL 314
A G+RRY RKQ GYG Q +P + AK TKK VL + C C K R K EL
Sbjct: 2 ALGERRYRRKQEGYGSQRRPEQKRFAKVTKKQVLVITCTVCGRKRPFLGIRLKRLEL 58
>sp|O28936|RL44_ARCFU 50S RIBOSOMAL PROTEIN L44E
pir||D69416 LSU ribosomal protein L44E (rpl44E) homolog - Archaeoglobus
fulgidus
gb|AAB89909.1| (AE001011) LSU ribosomal protein L44E (rpl44E) [Archaeoglobus
fulgidus]
Length = 93
Score = 43.8 bits (101), Expect = 0.003
Identities = 32/89 (35%), Positives = 43/89 (47%), Gaps = 1/89 (1%)
Frame = -1
Query: 580 PKTRNTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRK-QSGYGGQTKPVFHKKAK 404
PK T+C+ C KHT H+V + GKAS R+ R+ + G G+ V K
Sbjct: 4 PKKVKTFCR--YCGKHTLHEVERVSKGKASSLNWINRQKKRRGKVGNLGKFSKV-PGGDK 60
Query: 403 TTKKVVLRLECVKCKTKLQLALKRCKHFEL 314
TK+V +R C +CK R K FEL
Sbjct: 61 PTKRVNIRFRCTECKKAHHRPTWRAKRFEL 90
>ref|NP_034916.1| transformed mouse 3T3 cell double minute 2
gb|AAB09030.1| (U47944) mdm2 gene product [Mus musculus]
gb|AAB09031.1| (U47934) includes exons 3 through 12 [Mus musculus]
Length = 489
Score = 34.0 bits (76), Expect = 2.2
Identities = 13/45 (28%), Positives = 26/45 (56%)
Frame = -3
Query: 386 PSIGVCQVQDQAPAGAEAMQALRAWVREQPELMDRDDANNDYSGD 252
PS+G+C++++ G+ + + + E P D DD +++SGD
Sbjct: 188 PSLGLCELREMCSGGSSSSSSSSSESTETPSHQDLDDGVSEHSGD 232
>sp|P23804|MDM2_MOUSE UBIQUITIN-PROTEIN LIGASE E3 MDM2 (P53-BINDING PROTEIN MDM2)
(ONCOPROTEIN MDM2) (DOUBLE MINUTE 2 PROTEIN)
gb|AAA91167.1| (U40145) Mdm2 [Mus musculus]
Length = 489
Score = 34.0 bits (76), Expect = 2.2
Identities = 13/45 (28%), Positives = 26/45 (56%)
Frame = -3
Query: 386 PSIGVCQVQDQAPAGAEAMQALRAWVREQPELMDRDDANNDYSGD 252
PS+G+C++++ G+ + + + E P D DD +++SGD
Sbjct: 188 PSLGLCELREMCSGGSSSSSSSSSESTETPSHQDLDDGVSEHSGD 232
>pir||S32479 hypothetical protein C - yeast (Kluyveromyces marxianus var.
lactis)
gb|AAA35263.1| (M94988) ORFC [Kluyveromyces lactis]
Length = 114
Score = 34.0 bits (76), Expect = 2.2
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +2
Query: 293 VLVVHVPKLEVLASLQRQLELGLALDTLQSKDNXXXXXXXXXXXXXXXXXXXXXXAVIST 472
+L++ + EVL SLQ QL LGL T QS+++ VIS+
Sbjct: 15 LLLLFTTQFEVLTSLQSQLGLGLTGHTFQSQNDLLGSLSFLVENLLGLTTETRLFTVISS 74
Query: 473 LTLGEQ 490
LTL Q
Sbjct: 75 LTLSVQ 80
>pir||S15349 mdm2 protein - mouse
emb|CAA41684.1| (X58876) mdm2 product [Mus musculus]
Length = 489
Score = 33.6 bits (75), Expect = 2.8
Identities = 13/45 (28%), Positives = 25/45 (54%)
Frame = -3
Query: 386 PSIGVCQVQDQAPAGAEAMQALRAWVREQPELMDRDDANNDYSGD 252
PS+G+C++++ G + + + E P D DD +++SGD
Sbjct: 188 PSLGLCELREMCSGGTSSSSSSSSESTETPSHQDLDDGVSEHSGD 232
>pir||T19835 hypothetical protein C38D9.5 - Caenorhabditis elegans
emb|CAB03951.1| (Z81481) C38D9.5 [Caenorhabditis elegans]
emb|CAB07494.1| (Z92973) C38D9.5 [Caenorhabditis elegans]
Length = 1213
Score = 32.1 bits (71), Expect = 8.3
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 6/70 (8%)
Frame = -1
Query: 571 RNTYCKGKECRKHTQH---KVTQYKAGKASLF---AQGKRRYDRKQSGYGGQTKPVFHKK 410
RN Y K+C K+ + KV +K L AQGK +Y YG TK + + +
Sbjct: 843 RNNYGAFKKCLKNGAYVNAKVQSHKQSNTMLHECVAQGKTKYIETLIKYGATTK-ILNHE 901
Query: 409 AKTTKKVVLRLECVKC 362
+T + R++ KC
Sbjct: 902 GETPYDIAKRMKKTKC 917
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273548960
Number of Sequences: 565281
Number of extensions: 5788268
Number of successful extensions: 16495
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16432
Number of HSP's gapped (non-prelim): 48
length of query: 284
length of database: 177,575,912
effective HSP length: 54
effective length of query: 229
effective length of database: 147,050,738
effective search space: 33674619002
effective search space used: 33674619002
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)