The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.

BLASTX 2.1.1 [Aug-8-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig10.seq Contig10
         (822 letters)

Database: nr
           565,281 sequences; 177,575,912 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAA85880.1|  (U33331) orf UL141 [human herpesvirus 5]           32  6.1
pir||T16582  hypothetical protein K08A8.3 - Caenorhabditis e...    32  6.1

>gb|AAA85880.1| (U33331) orf UL141 [human herpesvirus 5]
          Length = 425

 Score = 32.5 bits (72), Expect = 6.1
 Identities = 30/86 (34%), Positives = 50/86 (57%), Gaps = 32/86 (37%)
 Frame = -3

Query: 433 VGKTGDGDGN---DTARKTSRTMLGM---RVIQTL-STRPKQVMSVA------------- 314
           VG+ GDG+G     T +KT R++ G+   ++ +T+ +T P + +S               
Sbjct: 21  VGRDGDGEGEAAKKTCKKTGRSVAGIPGEKLRRTVVTTTPARRLSGRHTEQEQAGMRLCE 80

Query: 313 ------VQCLLSVLSRMPWLYPVPIDFPRLISNTEDS------DINRPQWSSYREKCS 176
                 + C    L  +PWL+ V +  PRL+  +  S      DI    W+   E  S
Sbjct: 81  KGKKRIIMCRRESLRTLPWLFWVLLSCPRLLEYSSSSFPFATADIAEKMWAENYETTS 138



>pir||T16582 hypothetical protein K08A8.3 - Caenorhabditis elegans
 gb|AAA79748.1| (U38377) weak similarity to M. musculus ubiquitin carboxyl-terminal
           hydrolase (SP:UBP_MOUSE, P35123); similar to S. pombe
           double-strand-break repair protein, RAD21
           (SP:RA21_SCHPO,P30776) [Caenorhabditis elegans]
          Length = 652

 Score = 32.5 bits (72), Expect = 6.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 378 VRDVFRAVSLPSPSPVFPTHSSQDLFSSF 464
           ++ VFR+ +L  P+PV PT S QD++  F
Sbjct: 140 IKLVFRSGALDQPNPVLPTFSIQDIYGDF 168



  Database: nr
    Posted date:  Sep 29, 2000  9:53 PM
  Number of letters in database: 177,575,912
  Number of sequences in database:  565,281
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266245222
Number of Sequences: 565281
Number of extensions: 5548710
Number of successful extensions: 18841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18839
Number of HSP's gapped (non-prelim): 3
length of query: 274
length of database: 177,575,912
effective HSP length: 54
effective length of query: 219
effective length of database: 147,050,738
effective search space: 32204111622
effective search space used: 32204111622
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)