The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.1.1 [Aug-8-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig13.seq Contig13
(904 letters)
Database: nr
565,281 sequences; 177,575,912 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00496|BXE_CLOBO BOTULINUM NEUROTOXIN TYPE E PRECURSOR (... 32 6.8
dbj|BAB03512.1| (AB037704) type E botulinum toxin [Clostrid... 32 6.8
sp|P30995|BXE_CLOBU BOTULINUM NEUROTOXIN TYPE E PRECURSOR (... 32 6.8
dbj|BAB12249.1| (AB039264) type E botulinum toxin [Clostrid... 32 6.8
pir||S21178 botulinum neurotoxin type E precursor - Clostri... 32 6.8
pir||S49446 RING-finger protein - Lotus japonicus >gi|55854... 32 6.8
>sp|Q00496|BXE_CLOBO BOTULINUM NEUROTOXIN TYPE E PRECURSOR (BONT/E) (BONTOXILYSIN E)
pir||JH0257 botulinum neurotoxin type E precursor - Clostridium botulinum
(strain Beluga)
emb|CAA43999.1| (X62089) botulinum neurotoxin type E [Clostridium botulinum]
Length = 1251
Score = 32.5 bits (72), Expect = 6.8
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3
Query: 554 TIMGIYGQLSGTAKYTTKMKMSGTFTGYAGPNNELFYRYRSLDIMCDTTGEREAIAGAIE 375
++ G+YG T KYT K + T G N E F + D+ T+ + I +
Sbjct: 217 SLHGLYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLL 276
Query: 374 HHIKKHGSKV 345
KK SK+
Sbjct: 277 ADYKKIASKL 286
>dbj|BAB03512.1| (AB037704) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03513.1| (AB037705) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03514.1| (AB037706) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03515.1| (AB037707) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03516.1| (AB037708) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03517.1| (AB037709) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03518.1| (AB037710) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03519.1| (AB037711) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03520.1| (AB037712) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03521.1| (AB037713) type E botulinum toxin [Clostridium butyricum]
dbj|BAB03522.1| (AB037714) type E botulinum toxin [Clostridium butyricum]
Length = 1251
Score = 32.5 bits (72), Expect = 6.8
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3
Query: 554 TIMGIYGQLSGTAKYTTKMKMSGTFTGYAGPNNELFYRYRSLDIMCDTTGEREAIAGAIE 375
++ G+YG T KYT K + T G N E F + D+ T+ + I +
Sbjct: 217 SLHGLYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLL 276
Query: 374 HHIKKHGSKV 345
KK SK+
Sbjct: 277 ADYKKIASKL 286
>sp|P30995|BXE_CLOBU BOTULINUM NEUROTOXIN TYPE E PRECURSOR (BONT/E) (BONTOXILYSIN E)
pir||JH0256 botulinum neurotoxin type E precursor - Clostridium butyricum
emb|CAA43998.1| (X62088) botulinum neurotoxin [Clostridium butyricum]
Length = 1251
Score = 32.5 bits (72), Expect = 6.8
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3
Query: 554 TIMGIYGQLSGTAKYTTKMKMSGTFTGYAGPNNELFYRYRSLDIMCDTTGEREAIAGAIE 375
++ G+YG T KYT K + T G N E F + D+ T+ + I +
Sbjct: 217 SLHGLYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLL 276
Query: 374 HHIKKHGSKV 345
KK SK+
Sbjct: 277 ADYKKIASKL 286
>dbj|BAB12249.1| (AB039264) type E botulinum toxin [Clostridium butyricum]
Length = 1255
Score = 32.5 bits (72), Expect = 6.8
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3
Query: 554 TIMGIYGQLSGTAKYTTKMKMSGTFTGYAGPNNELFYRYRSLDIMCDTTGEREAIAGAIE 375
++ G+YG T KYT K + T G N E F + D+ T+ + I +
Sbjct: 220 SLHGLYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLL 279
Query: 374 HHIKKHGSKV 345
KK SK+
Sbjct: 280 ADYKKIASKL 289
>pir||S21178 botulinum neurotoxin type E precursor - Clostridium botulinum
emb|CAA44558.1| (X62683) botulinum neurotoxin type E [Clostridium botulinum]
Length = 1252
Score = 32.5 bits (72), Expect = 6.8
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3
Query: 554 TIMGIYGQLSGTAKYTTKMKMSGTFTGYAGPNNELFYRYRSLDIMCDTTGEREAIAGAIE 375
++ G+YG T KYT K + T G N E F + D+ T+ + I +
Sbjct: 217 SLHGLYGAKGITTKYTITQKQNPLITNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLL 276
Query: 374 HHIKKHGSKV 345
KK SK+
Sbjct: 277 ADYKKIASKL 286
>pir||S49446 RING-finger protein - Lotus japonicus
emb|CAA85321.1| (Z36750) protein containing C-terminal RING-finger [Lotus
japonicus]
emb|CAA70734.1| (Y09539) RING-finger protein [Lotus japonicus]
Length = 549
Score = 32.5 bits (72), Expect = 6.8
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = -2
Query: 447 LPISLS*YNVRHNRRTGSYRWRNRTSHQETRLKGLRYRMFASD 319
LP+ Y+ RH R S WRN + R+ RYR A++
Sbjct: 369 LPMVAESYSSRHQRPLSSIGWRNSDRNGRARISSERYRSLANE 411
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 293700139
Number of Sequences: 565281
Number of extensions: 6447995
Number of successful extensions: 16830
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16824
Number of HSP's gapped (non-prelim): 6
length of query: 301
length of database: 177,575,912
effective HSP length: 54
effective length of query: 246
effective length of database: 147,050,738
effective search space: 36174481548
effective search space used: 36174481548
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)