Score E
Sequences producing significant alignments: (bits) Value
pir||T39643 probable cleavage and polyadenylation specifici... 102 5e-21
gb|AAD46873.1|AF160933_1 (AF160933) BcDNA.LD14168 [Drosophi... 63 4e-09
gb|AAD33061.1|AF139986_1 (AF139986) cleavage and polyadenyl... 61 2e-08
dbj|BAA92605.1| (AB037788) KIAA1367 protein [Homo sapiens] 60 3e-08
emb|CAC09445.1| (AL442079) hypothetical protein [Homo sapiens] 60 3e-08
sp|Q10568|CPSB_BOVIN CLEAVAGE AND POLYADENYLATION SPECIFICI... 59 7e-08
ref|NP_058552.1| cleavage and polyadenylation specific fact... 58 1e-07
emb|CAA97684.1| (Z73288) ORF YLR115w [Saccharomyces cerevis... 53 5e-06
ref|NP_013216.1| Component of cleavage factor II (CF II); 1... 53 5e-06
pir||T31674 hypothetical protein 1 - fruit fly (Drosophila ... 44 0.002
dbj|BAB10061.1| (AB005244) cleavage and polyadenylation spe... 36 0.46
gb|AAF82809.1|AF283277_1 (AF283277) polyadenylation cleavag... 36 0.46
gb|AAF48760.1| (AE003506) CG15816 gene product [Drosophila ... 35 1.0
pir||T19687 hypothetical protein C33G3.5 - Caenorhabditis e... 34 2.3
dbj|BAA19685.1| (D86424) high-sulfur keratin protein [Mus m... 34 2.3
pir||T34712 probable hydrolase - Streptomyces coelicolor >g... 32 6.9
ref|NP_055968.1| KIAA0244 protein >gi|6648928|gb|AAF21292.1... 32 6.9
dbj|BAA13438.1| (D87685) similar to human transcription fac... 32 6.9
>pir||T39643 probable cleavage and polyadenylation specificity factor - fission
yeast (Schizosaccharomyces pombe)
emb|CAA21254.1| (AL031852) putative cleavage and polyadenylation specificity factor
subunit. [Schizosaccharomyces pombe]
Length = 797
Score = 102 bits (252), Expect = 5e-21
Identities = 63/186 (33%), Positives = 95/186 (50%), Gaps = 2/186 (1%)
Frame = -3
Query: 835 DVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQLLATHLXXXXXX 656
DVY P G +++ S+D NA+ +KLAD L++ + W V G +H+
Sbjct: 624 DVYIPNYGEIINVSIDVNAFSLKLADDLIKNLIWTKV---------GNCEVSHMLAKVEI 674
Query: 655 X--XXXXNKRQKTEEPPSSTTLTNTAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLR 482
+K+++ E+ PVL+ L A A PL VG++R
Sbjct: 675 SKPSEEEDKKEEVEKKDGDKERNEEKKEEKETLPVLNALTLRSDLARAPRAAPLLVGNIR 734
Query: 481 LADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTSAGRVEVESVGMPTARRSTFYEVRKM 302
LA LR+A+ G +AE +GEG L+ G VAVRK S G++ VE + + F+E+RK+
Sbjct: 735 LAYLRKALLDQGISAELKGEGVLLCGGAVAVRKLSGGKISVEG-----SLSNRFFEIRKL 789
Query: 301 IYDNLAVV 278
+YD LAVV
Sbjct: 790 VYDALAVV 797
>gb|AAD46873.1|AF160933_1 (AF160933) BcDNA.LD14168 [Drosophila melanogaster]
gb|AAF56844.1| (AE003768) BcDNA:LD14168 gene product [Drosophila melanogaster]
Length = 756
Score = 63.2 bits (151), Expect = 4e-09
Identities = 42/185 (22%), Positives = 86/185 (45%)
Frame = -3
Query: 832 VYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQLLATHLXXXXXXX 653
V+TP+ G ++D + + + + V+L + LV ++++Q + + + G+L
Sbjct: 597 VFTPQKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRL------------ 644
Query: 652 XXXXNKRQKTEEPPSSTTLTNTAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLRLAD 473
R K E P T+ A+ T L+ L + I S + +L+L+D
Sbjct: 645 ----GMRVKAIEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVL----INELKLSD 696
Query: 472 LRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTSAGRVEVESVGMPTARRSTFYEVRKMIYD 293
++ + +EF G +GT+A+R+ AG+V +E +Y++R+++Y+
Sbjct: 697 FKQTLMRNNINSEFSGGVLWCSNGTLALRRVDAGKVAMEG-----CLSEEYYKIRELLYE 751
Query: 292 NLAVV 278
A+V
Sbjct: 752 QYAIV 756
>gb|AAD33061.1|AF139986_1 (AF139986) cleavage and polyadenylation specificity factor 100 kDa
subunit [Xenopus laevis]
Length = 783
Score = 60.5 bits (144), Expect = 2e-08
Identities = 51/189 (26%), Positives = 92/189 (47%), Gaps = 24/189 (12%)
Frame = -3
Query: 844 RSVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQLLATHLXXX 665
+ + VYTP++ VDA+ +T+ + V+L D LV +K+ + + I G L +
Sbjct: 584 KDIKVYTPKLHETVDATSETHIYQVRLKDSLVSSLKFCKAKDTELAWIDGVL---DMRVS 640
Query: 664 XXXXXXXXNKRQKTEEPPSSTTLTNTAAAIPSAT------------------------PV 557
+R+ +E +T S P
Sbjct: 641 KVDTGVILEERELKDEGEDMEMQVDTQVMDASTIAQQKVIKSLFGDDDKEFSEESEIIPT 700
Query: 556 LDVLPANLISAVRSAAQPLHVGDLRLADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTS 377
L+ LP+N + +S + + + RL+D ++ + G AEF G G LV + VAVR+T
Sbjct: 701 LEPLPSNEVPGHQS----VFMNEPRLSDFKQVLLREGIHAEFVG-GVLVCNNMVAVRRTE 755
Query: 376 AGRVEVESVGMPTARRSTFYEVRKMIYDNLAVV 278
GR +G+ F+++R+++Y+ A+V
Sbjct: 756 TGR-----IGLEGCLCEDFFKIRELLYEQYAIV 783
>dbj|BAA92605.1| (AB037788) KIAA1367 protein [Homo sapiens]
Length = 579
Score = 60.1 bits (143), Expect = 3e-08
Identities = 51/189 (26%), Positives = 91/189 (47%), Gaps = 20/189 (10%)
Frame = -3
Query: 844 RSVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQL------LA 683
+ + VY P++ VDA+ +T+ + V+L D LV +++ + + I G L +
Sbjct: 381 KDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVD 440
Query: 682 THLXXXXXXXXXXXNKRQKTEEPPSSTTLTNTAAAIPS--------------ATPVLDVL 545
T + + E PS +++ A+ S P L+ L
Sbjct: 441 TGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPL 500
Query: 544 PANLISAVRSAAQPLHVGDLRLADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTSAGRV 365
P + + Q + + + RL+D ++ + G AEF G G LV + VAVR+T GR
Sbjct: 501 PPHEV----PGHQSVFMNEPRLSDFKQVLLREGIQAEFVG-GVLVCNNQVAVRRTETGR- 554
Query: 364 EVESVGMPTARRSTFYEVRKMIYDNLAVV 278
+G+ FY +R ++Y+ A+V
Sbjct: 555 ----IGLEGCLCQDFYRIRDLLYEQYAIV 579
>emb|CAC09445.1| (AL442079) hypothetical protein [Homo sapiens]
Length = 504
Score = 60.1 bits (143), Expect = 3e-08
Identities = 51/189 (26%), Positives = 91/189 (47%), Gaps = 20/189 (10%)
Frame = -3
Query: 844 RSVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQL------LA 683
+ + VY P++ VDA+ +T+ + V+L D LV +++ + + I G L +
Sbjct: 306 KDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVD 365
Query: 682 THLXXXXXXXXXXXNKRQKTEEPPSSTTLTNTAAAIPS--------------ATPVLDVL 545
T + + E PS +++ A+ S P L+ L
Sbjct: 366 TGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPL 425
Query: 544 PANLISAVRSAAQPLHVGDLRLADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTSAGRV 365
P + + Q + + + RL+D ++ + G AEF G G LV + VAVR+T GR
Sbjct: 426 PPHEV----PGHQSVFMNEPRLSDFKQVLLREGIQAEFVG-GVLVCNNQVAVRRTETGR- 479
Query: 364 EVESVGMPTARRSTFYEVRKMIYDNLAVV 278
+G+ FY +R ++Y+ A+V
Sbjct: 480 ----IGLEGCLCQDFYRIRDLLYEQYAIV 504
>sp|Q10568|CPSB_BOVIN CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD SUBUNIT (CPSF
100 KD SUBUNIT)
pir||A56351 cleavage and polyadenylation specificity factor 100K chain - bovine
emb|CAA53535.1| (X75931) Cleavage and Polyadenylation specificity factor (CPSF) 100kD
subunit [Bos taurus]
Length = 782
Score = 58.9 bits (140), Expect = 7e-08
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Frame = -3
Query: 844 RSVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQL------LA 683
+ + VY P++ VDA+ +T+ + V+L D LV +++ + + I G L +
Sbjct: 584 KDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVD 643
Query: 682 THLXXXXXXXXXXXNKRQKTEEPPSSTTLTNTAAAIPSA--------------TPVLDVL 545
T + + + PS +++ A+ S P L+ L
Sbjct: 644 TGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPL 703
Query: 544 PANLISAVRSAAQPLHVGDLRLADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTSAGRV 365
P + + +S + + + RL+D ++ + G AEF G G LV + VAVR+T GR
Sbjct: 704 PPHEVPGHQS----VFMNEPRLSDFKQVLLREGIQAEFVG-GVLVCNNQVAVRRTETGR- 757
Query: 364 EVESVGMPTARRSTFYEVRKMIYDNLAVV 278
+G+ FY +R ++Y+ A+V
Sbjct: 758 ----IGLEGCLCQDFYRIRDLLYEQYAIV 782
>ref|NP_058552.1| cleavage and polyadenylation specific factor 2, 100kD subunit
gb|AAB66830.1| (AF012822) cleavage and polyadenylation specificity factor [Mus
musculus]
Length = 782
Score = 58.2 bits (138), Expect = 1e-07
Identities = 50/189 (26%), Positives = 91/189 (47%), Gaps = 20/189 (10%)
Frame = -3
Query: 844 RSVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQL------LA 683
+ + VY P++ VDA+ +T+ + V+L D LV +++ + + I G L +
Sbjct: 584 KDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVD 643
Query: 682 THLXXXXXXXXXXXNKRQKTEEPPSSTTLTNTAAAIPSA--------------TPVLDVL 545
T + + + PS ++ A+ S P L+ L
Sbjct: 644 TGVILEEGELKDDGEDSEMQVDAPSDSSAMAQQKAMKSLFGEDEKELGEETEIIPTLEPL 703
Query: 544 PANLISAVRSAAQPLHVGDLRLADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTSAGRV 365
P + + +S + + + RL+D ++ + G AEF G G LV + VAVR+T GR
Sbjct: 704 PPHEVPGHQS----VFMNEPRLSDFKQVLLREGIQAEFVG-GVLVCNNQVAVRRTETGR- 757
Query: 364 EVESVGMPTARRSTFYEVRKMIYDNLAVV 278
+G+ FY +R ++Y+ A+V
Sbjct: 758 ----IGLEGCLCQDFYRIRDLLYEQYAIV 782
>emb|CAA97684.1| (Z73288) ORF YLR115w [Saccharomyces cerevisiae]
gb|AAB82376.1| (U53877) Ydh1: 105 kDa protein associated with polyadenylation
factor 1 (PF I) [Saccharomyces cerevisiae]
Length = 377
Score = 52.7 bits (124), Expect = 5e-06
Identities = 29/75 (38%), Positives = 46/75 (60%)
Frame = -3
Query: 502 LHVGDLRLADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTSAGRVEVESVGMPTARRST 323
L +GD+RLA L++ + + AEF+GEGTLV++ VAVRK + ++ G P+
Sbjct: 308 LSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDAETIID--GTPS---EL 362
Query: 322 FYEVRKMIYDNLAVV 278
F V+K++ D LA +
Sbjct: 363 FDTVKKLVTDMLAKI 377
>ref|NP_013216.1| Component of cleavage factor II (CF II); 105-kDa protein associated
with polyadenylation factor 1 (PF I); Cft2p
pir||S64952 hypothetical protein YLR115w - yeast (Saccharomyces cerevisiae)
gb|AAB67560.1| (U53878) Ydh1p: 105 kDa protein associated with polyadenylation
factor 1 (PF I) [Saccharomyces cerevisiae]
emb|CAA61694.1| (X89514) putative orf [Saccharomyces cerevisiae]
emb|CAA97682.1| (Z73287) ORF YLR115w [Saccharomyces cerevisiae]
Length = 859
Score = 52.7 bits (124), Expect = 5e-06
Identities = 29/75 (38%), Positives = 46/75 (60%)
Frame = -3
Query: 502 LHVGDLRLADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKTSAGRVEVESVGMPTARRST 323
L +GD+RLA L++ + + AEF+GEGTLV++ VAVRK + ++ G P+
Sbjct: 790 LSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDAETIID--GTPS---EL 844
Query: 322 FYEVRKMIYDNLAVV 278
F V+K++ D LA +
Sbjct: 845 FDTVKKLVTDMLAKI 859
>pir||T31674 hypothetical protein 1 - fruit fly (Drosophila simulans)
retrotransposon ninja (fragment)
dbj|BAA57030.1| (D83207) ORF1 [Drosophila simulans]
Length = 1360
Score = 44.1 bits (102), Expect = 0.002
Identities = 41/121 (33%), Positives = 55/121 (44%), Gaps = 1/121 (0%)
Frame = +1
Query: 286 PNYRISSCAPRRRCF-AERSACPHSRLRRALRMSCGRRQCRQQPVYLHHETPLCDRRTAW 462
P R S+ R CF RS H+ + C CR++ L H +RR
Sbjct: 542 PQERWSNVKRHRLCFNCLRSG--HTARSCYTQGECQINGCRREHHRLLHGADE-ERRPLQ 598
Query: 463 RGASRQDEGHQRAVVELLSAQQK*GLREEHREQAWPRG*LPPCWSG*LMRGAPRSFGACW 642
RG R+ EG+Q+ V S ++ LR+ H++Q R P S L RGAPR GA
Sbjct: 599 RGGFRRHEGNQQPTVSRRSPARRPSLRDGHKDQ--ERNRQPAVPSNSLERGAPREAGAPM 656
Query: 643 QR 648
QR
Sbjct: 657 QR 658
>dbj|BAB10061.1| (AB005244) cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 739
Score = 36.4 bits (82), Expect = 0.46
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 5/179 (2%)
Frame = -3
Query: 832 VYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQLLATHLXXXXXXX 653
VY P++ VD + D A+ V+L++ L+ + ++ + + + ++
Sbjct: 590 VYAPQIEETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEV------------ 637
Query: 652 XXXXNKRQKTEEPPSSTTLTNTAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLRLAD 473
KTE S +LP + S +P+ VGDL++AD
Sbjct: 638 -------GKTERDMRS------------------LLP---MPGAASPHKPVLVGDLKIAD 669
Query: 472 LRRAMQSAGHTAEFRGEGTLVVDGTVAVRKT-----SAGRVEVESVGMPTARRSTFYEVR 308
++ + S G EF G G L V +RK G + + + +Y++R
Sbjct: 670 FKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQILIEGPLCEDYYKIR 729
Query: 307 KMIY 296
+Y
Sbjct: 730 DYLY 733
>gb|AAF82809.1|AF283277_1 (AF283277) polyadenylation cleavage/specificity factor 100 kDa
subunit [Arabidopsis thaliana]
Length = 739
Score = 36.4 bits (82), Expect = 0.46
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 5/179 (2%)
Frame = -3
Query: 832 VYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQLLATHLXXXXXXX 653
VY P++ VD + D A+ V+L++ L+ + ++ + + + ++
Sbjct: 590 VYAPQIEETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEV------------ 637
Query: 652 XXXXNKRQKTEEPPSSTTLTNTAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLRLAD 473
KTE S +LP + S +P+ VGDL++AD
Sbjct: 638 -------GKTERDMRS------------------LLP---MPGAASPHKPVLVGDLKIAD 669
Query: 472 LRRAMQSAGHTAEFRGEGTLVVDGTVAVRKT-----SAGRVEVESVGMPTARRSTFYEVR 308
++ + S G EF G G L V +RK G + + + +Y++R
Sbjct: 670 FKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQILIEGPLCEDYYKIR 729
Query: 307 KMIY 296
+Y
Sbjct: 730 DYLY 733
>gb|AAF48760.1| (AE003506) CG15816 gene product [Drosophila melanogaster]
Length = 607
Score = 35.2 bits (79), Expect = 1.0
Identities = 30/101 (29%), Positives = 45/101 (43%), Gaps = 3/101 (2%)
Frame = -1
Query: 669 KLRQRMRTL---PTSAKRPRSPPHQLP*PTRRQLSPRPRLFSMFFPQTLFLLCAQQLNHC 499
KL+++ R L T+++ S P++L + S L F P+ LFLL +
Sbjct: 370 KLQEKQRQLFGGSTASQIAGSSPYKL----QNSCSATSILTHSFPPKNLFLLKSTPKLST 425
Query: 498 TLVTFVLPTCAAPCSPPVTQRSFVVKVHWLLTALSPSARHPQGA 367
+ P +A CSPP SF+ + H A S S P A
Sbjct: 426 DIAAATPPNTSAICSPPKKSLSFIRRAHSTKVARSNSLLKPNQA 469
>pir||T19687 hypothetical protein C33G3.5 - Caenorhabditis elegans
emb|CAB01735.1| (Z78540) predicted using Genefinder [Caenorhabditis elegans]
Length = 435
Score = 34.0 bits (76), Expect = 2.3
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 210 LAKSMGHASFYSAMSED*DRC-ILRGGKHWLSSHKIGGWRSSDTIEIESTRGSLA 49
LA + F+ M ED +R +L G+H L SHK G +SDT+E+ ++A
Sbjct: 171 LASRAYYEKFFKPMLEDNNRQKLLEFGRHLLDSHKNGTLSTSDTLELNKKLQNIA 225
>dbj|BAA19685.1| (D86424) high-sulfur keratin protein [Mus musculus]
Length = 96
Score = 34.0 bits (76), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 492 VTFVLPTCAAPCSPPVTQRSFVVKVHWLLTALSPS 388
++ + PTC PC PP Q V WLL + P+
Sbjct: 38 ISLLQPTCCDPCPPPCCQPEVYVPTCWLLNSCHPT 72
>pir||T34712 probable hydrolase - Streptomyces coelicolor
emb|CAA19244.1| (AL023702) putative hydrolase [Streptomyces coelicolor A3(2)]
Length = 506
Score = 32.5 bits (72), Expect = 6.9
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = -3
Query: 544 PANLISAVRSAAQPLHVGDLRLADLRRAMQSAGHTA---EFRGEGTLVVDGTVAVRKTSA 374
P N I VRS V R +QS+G A F G G + VD + +A
Sbjct: 136 PDNPIIGVRSFGSDPEVVARHTTAWIRGLQSSGVAACAKHFPGHGDVAVDSHHDLPAYTA 195
Query: 373 GRVEVESVGMPTARRSTFYEVRKMIYDNLAVVA 275
GR E+ + +P R + VR ++ +L V A
Sbjct: 196 GRDEIAAQALPPFRAAVAAGVRAVMSGHLLVPA 228
>ref|NP_055968.1| KIAA0244 protein
gb|AAF21292.1|AF091622_1 (AF091622) PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 32.5 bits (72), Expect = 6.9
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -2
Query: 461 HAVRRSHSGVSW*RYTGC*RHCRRPQDIRRARRSRECGHADRSAKHLLRGAQDDIR*FGS 282
H ++R W + + R R QD R R+SRE GH D+ L G +
Sbjct: 1928 HHLKRERHEKEWEQESERHRRRDRSQDKDRDRKSREEGHKDKERARLSHGDRGTDGKASR 1987
Query: 281 CRRRVERLPGLPK 243
R V++ P PK
Sbjct: 1988 DSRNVDKKPDKPK 2000
>dbj|BAA13438.1| (D87685) similar to human transcription factor TFIIS (S34159). [Homo
sapiens]
Length = 1723
Score = 32.5 bits (72), Expect = 6.9
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -2
Query: 461 HAVRRSHSGVSW*RYTGC*RHCRRPQDIRRARRSRECGHADRSAKHLLRGAQDDIR*FGS 282
H ++R W + + R R QD R R+SRE GH D+ L G +
Sbjct: 1612 HHLKRERHEKEWEQESERHRRRDRSQDKDRDRKSREEGHKDKERARLSHGDRGTDGKASR 1671
Query: 281 CRRRVERLPGLPK 243
R V++ P PK
Sbjct: 1672 DSRNVDKKPDKPK 1684
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309339259
Number of Sequences: 565281
Number of extensions: 6823112
Number of successful extensions: 19760
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 19743
Number of HSP's gapped (non-prelim): 23
length of query: 303
length of database: 177,575,912
effective HSP length: 54
effective length of query: 248
effective length of database: 147,050,738
effective search space: 36468583024
effective search space used: 36468583024
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)