Score E
Sequences producing significant alignments: (bits) Value
emb|CAB90789.1| (AL355652) hypothetical protein simialr to ... 151 1e-35
ref|NP_012604.1| Yjr070cp >gi|1352887|sp|P47120|YJ40_YEAST ... 145 8e-34
gb|AAF57189.1| (AE003779) CG2245 gene product [Drosophila m... 134 2e-30
pir||T19243 hypothetical protein C14A4.1 - Caenorhabditis e... 125 6e-28
gb|AAC33193.1| (AC005551) R26529_2, partial CDS [Homo sapiens] 120 2e-26
emb|CAB68156.1| (AL137081) putative protein [Arabidopsis th... 101 2e-20
ref|NP_012597.1| A12.2 subunit of RNA polymerase I; Rpa12p ... 98 2e-19
sp|O94703|RPA9_SCHPO DNA-DIRECTED RNA POLYMERASE I 13.1 KDA... 90 4e-17
emb|CAB97722.1| (AL160493) probable hypothetical 35.7 Kd pr... 86 7e-16
gb|AAC27388.1| (AF027149) similar to ORF YJR070C from S. ce... 84 3e-15
gb|AAC27391.1| (AF028592) unknown [Babesia bovis] 74 3e-12
sp|Q58548|RPOM_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT M ... 64 3e-09
sp|Q56254|RPOM_THECE DNA-DIRECTED RNA POLYMERASE SUBUNIT M ... 61 3e-08
pir||A71112 probable transcription-associated protein - Pyr... 60 4e-08
pir||H75048 DNA-directed RNA polymerase (EC 2.7.7.6) chain ... 60 5e-08
emb|CAB82967.1| (AL162507) putative protein [Arabidopsis th... 59 1e-07
ref|NP_055411.1| zinc ribbon domain containing, 1 >gi|72128... 58 1e-07
sp|Q07271|RPOM_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT M 57 2e-07
pir||S33694 transcription elongation factor tfIIs - Sulfolo... 57 2e-07
pir||A55263 transcription-associated protein - Thermococcus... 56 6e-07
gb|AAF55918.1| (AE003736) CG13418 gene product [Drosophila ... 55 1e-06
emb|CAB66386.1| (AJ271332) archaeal transcription factor S ... 55 2e-06
sp|O29033|RPOM_ARCFU DNA-DIRECTED RNA POLYMERASE SUBUNIT M ... 53 5e-06
gb|AAB82597.1| (AF026272) YJR070c-like protein [Babesia big... 53 6e-06
gb|AAF79907.1|AC022472_16 (AC022472) Contains a weak simila... 52 1e-05
gb|AAF57437.1| (AE003791) CG10438 gene product [Drosophila ... 50 4e-05
ref|NP_057394.1| RNA polymerase III subunit (hRPC11) >gi|48... 50 6e-05
ref|NP_010330.1| TFIIS-like small Pol III subunit C11; Rpc1... 49 9e-05
gb|AAD15481.1| (AC006266) putative DNA-directed RNA polymer... 48 1e-04
gb|AAF89697.1|AF170279_1 (AF170279) phycoerythrobilin lyase... 48 1e-04
pdb|1QYP| Thermococcus Celer Rpb9, Nmr, 25 Structures 48 1e-04
emb|CAA11392.1| (AJ223472) transcription elongation factor ... 47 3e-04
pir||E71618 Zn-ribbon transcription factor (TFIIS family) P... 47 3e-04
pir||PS0180 transcription elongation factor S-II-related pr... 47 3e-04
emb|CAA11393.1| (AJ223473) transcription elongation factor ... 46 5e-04
pir||S26831 transcription elongation factor IIS - human >gi... 46 5e-04
gb|AAA40418.1| (M18209) transcription factor S-II [Mus musc... 46 5e-04
gb|AAF60910.1| (AC024880) contains similarity to SW:RPB9_DR... 46 5e-04
gb|AAF71710.1|AF220261_1 (AF220261) transcription elongatio... 46 5e-04
dbj|BAA00768.1| (D00925) ORF2 [Mus musculus] 46 5e-04
sp|P23713|TFSL_MOUSE TRANSCRIPTION FACTOR S-II-RELATED PROT... 46 5e-04
ref|NP_035671.1| transcription elongation factor A (SII), 1... 46 5e-04
pir||JC1170 transcription elongation factor SII - human >gi... 46 5e-04
ref|NP_006747.1| transcription elongation factor A (SII), 1... 46 5e-04
pir||A53004 transcription elongation factor S-II - rat >gi|... 46 6e-04
ref|NP_033352.1| transcription elongation factor A (SII), 2... 46 6e-04
pir||S55899 transcription elongation factor TfIIS - fruit f... 46 6e-04
sp|P20232|TFS2_DROME TRANSCRIPTION ELONGATION FACTOR S-II (... 46 6e-04
gb|AAF97332.1|AC023628_13 (AC023628) Similar to DNA-directe... 46 6e-04
pir||S72365 transcription elongation factor TFIIS.oB - Afri... 46 6e-04
gb|AAF44916.1|AE003406_121 (AE003416) symbol=TfIIS; synonym... 46 6e-04
pir||S34159 transcription elongation factor IIS - human >gi... 46 6e-04
emb|CAA24928.1| (X00047) reading frame PPR2 [Saccharomyces ... 46 8e-04
gb|AAA34580.1| (M60770) DST1 [Saccharomyces cerevisiae] >gi... 46 8e-04
ref|NP_011472.1| RNA polymerase II elongation factor; Dst1p... 46 8e-04
emb|CAA66256.1| (X97666) TFIIS elongation factor [Xenopus l... 46 8e-04
sp|O13896|RPCZ_SCHPO DNA-DIRECTED RNA POLYMERASES III 12.5 ... 45 0.001
pir||T19321 hypothetical protein C15H11.8 - Caenorhabditis ... 45 0.001
sp|P23881|TFSM_MOUSE TRANSCRIPTION FACTOR S-II-RELATED PROT... 45 0.001
gb|AAC60115.1| (U57837) transcription elongation factor [Xe... 45 0.001
pir||G72738 probable DNA-directed RNA polymerase subunit M ... 45 0.001
gb|AAF36076.1| (AC024214) contains similarity to Pfam famil... 45 0.002
ref|NP_003186.1| transcription elongation factor A (SII), 2... 45 0.002
pir||JC4809 transcriptional factor TFIIS - African clawed f... 44 0.002
gb|AAC64680.1| (AF039948) transcription elongation factor S... 44 0.003
gb|AAC64679.1| (AF039947) transcription elongation factor S... 44 0.003
dbj|BAB01057.1| (AB023041) contains similarity to transcrip... 43 0.004
pdb|1TFI| Transcriptional Elongation Factor Sii (Tfiis, ... 43 0.004
emb|CAB52702.1| (AJ001230) bilin biosynthesis protein [Proc... 43 0.007
emb|CAB62850.1| (AL035475) putative transcription factor [P... 42 0.009
sp|P52652|TFS2_CAEEL PUTATIVE TRANSCRIPTION ELONGATION FACT... 42 0.009
dbj|BAA33021.1| (AB007988) RNA polymerase II subunit 9 [Sch... 41 0.021
sp|O27369|RPOM_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT M ... 41 0.028
sp|P49373|TFS2_SCHPO TRANSCRIPTION ELONGATION FACTOR S-II (... 40 0.047
ref|NP_042831.1| transcription factor SII homolog >gi|13565... 39 0.062
emb|CAB76962.1| (AJ133610) alpha-gliadin [Triticum aestivum] 39 0.11
emb|CAA50848.1| (X71982) transcription factor SII [African ... 39 0.11
dbj|BAB05437.1| (AP001512) unknown conserved protein [Bacil... 38 0.24
emb|CAB64589.1| (AL135958) transcription factor IIS (TFIIS)... 37 0.31
sp|P04724|GDA4_WHEAT ALPHA/BETA-GLIADIN A-IV PRECURSOR (PRO... 37 0.41
sp|P36958|RPB9_DROME DNA-DIRECTED RNA POLYMERASE II 15.1 KD... 37 0.41
pir||E69096 phycocyanin alpha phycocyanobilin lyase CpcE re... 37 0.41
gb|AAC67362.1| (AC005499) putative elongation factor [Arabi... 36 0.54
gb|AAA96524.1| (U51306) alpha-gliadin storage protein [Trit... 36 0.54
ref|NP_003421.1| zinc finger protein 91 (HPF7, HTF10) >gi|5... 36 0.54
emb|CAB76958.1| (AJ133606) alpha-gliadin [Triticum aestivum] 36 0.70
emb|CAB76960.1| (AJ133608) alpha-gliadin [Triticum aestivum] 36 0.70
ref|NP_048472.1| contains a zinc ribbon domain; similar to ... 36 0.70
pir||S47663 transcription elongation factor TFIIS homolog -... 36 0.70
ref|NP_006224.1| polymerase (RNA) II (DNA directed) polypep... 36 0.70
pir||S39445 DNA-directed RNA polymerase (EC 2.7.7.6) II cha... 36 0.70
pir||T42076 protein kinase homolog - Streptomyces coelicolo... 36 0.70
emb|CAB76959.1| (AJ133607) alpha-gliadin [Triticum aestivum] 35 1.2
emb|CAB62001.1| (AL132967) hypothetical protein [Arabidopsi... 35 1.6
pir||D22364 alpha/beta-gliadin precursor (clone A735) - wheat 35 1.6
emb|CAB76955.1| (AJ133603) alpha-gliadin [Triticum aestivum] 34 2.1
dbj|BAA01477.1| (D10627) zinc finger protein [Mus musculus] 34 2.1
dbj|BAA12318.1| (D84341) alpha-gliadin [Triticum aestivum] 34 2.1
emb|CAA10257.1| (AJ130948) alpha-gliadin [Triticum spelta] 34 2.1
emb|CAB76961.1| (AJ133609) alpha-gliadin [Triticum aestivum] 34 2.1
pir||S18235 omega secalin precursor (clone pSec1B) - rye >g... 34 2.7
pir||C69050 phycocyanin alpha phycocyanobilin lyase CpcE - ... 34 2.7
gb|AAB29028.2| (S66940) RNA polymerase II subunit 9 [Drosop... 34 2.7
emb|CAA17944.1| (AL022118) hypothetical protein MLCB1913.12... 34 2.7
gb|AAD54777.1|AF135454_1 (AF135454) telomerase reverse tran... 34 2.7
gb|AAD54276.1|AF172097_1 (AF172097) telomerase reverse tran... 34 2.7
pir||S47662 transcription elongation factor TFIIS homolog -... 34 3.6
sp|P73638|CPCE_SYNY3 PHYCOCYANOBILIN LYASE ALPHA SUBUNIT (P... 34 3.6
pir||S75919 hypothetical protein slr1687 - Synechocystis sp... 34 3.6
gb|AAA96276.1| (U50984) alpha-gliadin [Triticum aestivum] 33 4.7
pir||B41288 vascular cell adhesion molecule 1, short form p... 33 4.7
ref|NP_001069.1| vascular cell adhesion molecule 1 >gi|1375... 33 4.7
gb|AAD44475.1|AF076964_4 (AF076964) transcription factor II... 33 4.7
sp|P18715|ZG26_XENLA GASTRULA ZINC FINGER PROTEIN XLCGF26.1... 33 6.1
gb|AAC78143.1| (AF102552) 270 kDa ankyrin G isoform [Rattus... 33 6.1
sp|P29729|PECE_MASLA BILIN BIOSYNTHESIS PROTEIN PECE >gi|14... 32 8.0
sp|P16872|IL7R_MOUSE INTERLEUKIN-7 RECEPTOR ALPHA CHAIN PRE... 32 8.0
dbj|BAA34724.1| (AB020542) Zinc finger protein s11-6 [Mus m... 32 8.0
ref|NP_002578.1| protocadherin 1 (cadherin-like 1) >gi|3876... 32 8.0
pir||B22364 alpha/beta-gliadin precursor (clone A26) - wheat 32 8.0
pir||A27319 gliadin - wheat >gi|170740|gb|AAA34290.1| (M164... 32 8.0
sp|P04726|GDA6_WHEAT ALPHA/BETA-GLIADIN CLONE PW1215 PRECUR... 32 8.0
>emb|CAB90789.1| (AL355652) hypothetical protein simialr to YJR070C
[Schizosaccharomyces pombe]
Length = 318
Score = 151 bits (377), Expect = 1e-35
Identities = 84/161 (52%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Frame = +1
Query: 103 IDPAPPMP--ESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXX 276
+DPAPPMP E D ++EV L +++D N LF RYR MF LR++ +
Sbjct: 161 VDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPLFYRYRVMFRLRNIGNEEAVLALTD---- 216
Query: 277 XXKGLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKD 456
G D S LFRHEIAFVFGQ+ PAS+PAL + L NT E MVRHEAAEALG + D
Sbjct: 217 ---GFKDPSPLFRHEIAFVFGQMIAPASVPALIKVLENTEEVPMVRHEAAEALGGIA-ND 272
Query: 457 GVEDTLRKFLHDKEKVVRESCIVALDIAEYEKGEDAEYALIPE 585
L+KF D +VV ESCIVALD+ EYEK D EYA IP+
Sbjct: 273 ECLPVLKKFSKDDVRVVAESCIVALDMIEYEKSGDMEYAYIPK 315
Score = 72.2 bits (174), Expect = 9e-12
Identities = 45/141 (31%), Positives = 75/141 (52%), Gaps = 2/141 (1%)
Frame = +1
Query: 139 EAEVEDLGRKL--MDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALF 312
+A +++L R L +D + L RYRA+F+L LA K D S L
Sbjct: 8 QAVIDELERVLVNLDKSNPLSFRYRALFSLNALAKKGDKRAVDAIY----KAFIDDSELL 63
Query: 313 RHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHD 492
+HE+A+V GQ ++ L +++ ++ MVRHEAAEALG+LG + + + + D
Sbjct: 64 KHEMAYVMGQSGQQYAVQPLINIVNDLDQQVMVRHEAAEALGALGFTESLPVLEKYYKED 123
Query: 493 KEKVVRESCIVALDIAEYEKGED 561
+RE+C +A+ +++ G D
Sbjct: 124 PLAPIRETCELAIARIQWKNGLD 146
>ref|NP_012604.1| Yjr070cp
sp|P47120|YJ40_YEAST HYPOTHETICAL 36.2 KD PROTEIN IN HAM1-PEM2 INTERGENIC REGION
pir||S57089 hypothetical protein YJR070c - yeast (Saccharomyces cerevisiae)
emb|CAA89598.1| (Z49570) ORF YJR070c [Saccharomyces cerevisiae]
gb|AAB39296.1| (L47993) ORF YJR070c [Saccharomyces cerevisiae]
Length = 325
Score = 145 bits (362), Expect = 8e-34
Identities = 77/160 (48%), Positives = 103/160 (64%)
Frame = +1
Query: 94 FASIDPAPPMPESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXX 273
++SIDPAPP+P +K+A + +L L D LF RYRAMF LRD+ +
Sbjct: 171 YSSIDPAPPLP-LEKDATIPELQALLNDPKQPLFQRYRAMFRLRDIGTDEAILALAT--- 226
Query: 274 XXXKGLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEK 453
G S S+LF+HEIA+VFGQ+ PA++P+L E L EA MVRHEAAEALG++
Sbjct: 227 ----GFSAESSLFKHEIAYVFGQIGSPAAVPSLIEVLGRKEEAPMVRHEAAEALGAIASP 282
Query: 454 DGVEDTLRKFLHDKEKVVRESCIVALDIAEYEKGEDAEYA 573
+ V D L+ +L+D+ VVRESCIVALD+ +YE + EYA
Sbjct: 283 E-VVDVLKSYLNDEVDVVRESCIVALDMYDYENSNELEYA 321
Score = 78.4 bits (190), Expect = 1e-13
Identities = 47/143 (32%), Positives = 77/143 (52%), Gaps = 5/143 (3%)
Frame = +1
Query: 127 ESDKEAEVEDLGRKLMDTNAD--LFSRYRAMFALRDLASXXXXX---XXXXXXXXXXKGL 291
E+ E +E L L++ + L +R+RA+F L+ +A +
Sbjct: 11 ENVDECTLEQLRDILVNKSGKTVLANRFRALFNLKTVAEEFATKPEEAKKAIEYIAESFV 70
Query: 292 SDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDT 471
+D S L +HE+A+V GQ + + P L + + N+ MVRHEAAEALG+LG+KD ++D
Sbjct: 71 NDKSELLKHEVAYVLGQTKNLDAAPTLRHVMLDQNQEPMVRHEAAEALGALGDKDSLDDL 130
Query: 472 LRKFLHDKEKVVRESCIVALDIAEYEKG 555
+ D VRE+C +A++ + G
Sbjct: 131 NKAAKEDPHVAVRETCELAINRINWTHG 158
>gb|AAF57189.1| (AE003779) CG2245 gene product [Drosophila melanogaster]
Length = 302
Score = 134 bits (334), Expect = 2e-30
Identities = 74/163 (45%), Positives = 101/163 (61%)
Frame = +1
Query: 85 SSDFASIDPAPPMPESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXX 264
S+ +AS+DP+PP DK V +L +D LF RYRAMF+LR+L +
Sbjct: 141 SNPYASVDPSPPTA-GDKS--VTELKAIYLDAQQSLFDRYRAMFSLRNLRTEESVLAIA- 196
Query: 265 XXXXXXKGLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSL 444
+GL DSSALFRHE+AFV GQL P SIP L E L + E MVRHE AEALG++
Sbjct: 197 ------EGLKDSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENEMVRHECAEALGAI 250
Query: 445 GEKDGVEDTLRKFLHDKEKVVRESCIVALDIAEYEKGEDAEYA 573
+D ++ L ++ D ++VV+ESC++ALD+ EYE + +YA
Sbjct: 251 ATEDCIQ-ILNRYAEDDKRVVKESCVIALDMCEYENSPEFQYA 292
Score = 80.4 bits (195), Expect = 3e-14
Identities = 44/132 (33%), Positives = 70/132 (52%)
Frame = +1
Query: 139 EAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRH 318
+ ++E +G L + L R+RA+F L+++ K D SAL +H
Sbjct: 4 QQQIEAIGGVLNNKERPLKERFRALFTLKNIGGGAAIEAIS-------KAFDDDSALLKH 56
Query: 319 EIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKE 498
E+A+ GQ+ ++ LT+ L +T + MVRHEAAEA+G++G D V L ++ D
Sbjct: 57 ELAYCLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGHPD-VLPILEEYKQDPV 115
Query: 499 KVVRESCIVALD 534
V E+C +ALD
Sbjct: 116 VEVAETCAIALD 127
>pir||T19243 hypothetical protein C14A4.1 - Caenorhabditis elegans
emb|CAA90105.1| (Z49909) cDNA EST CEMSF21F comes from this gene~cDNA EST yk60c10.5
comes from this gene~cDNA EST yk61g4.5 comes from this
gene~cDNA EST yk60c10.3 comes from this gene~cDNA EST
yk61g4.3 comes from this gene~cDNA EST yk158b2.3 comes
from this gene~cDNA E>
Length = 298
Score = 125 bits (312), Expect = 6e-28
Identities = 71/163 (43%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Frame = +1
Query: 85 SSDFASIDPAPPMPESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXX 264
+S + S+DP P SD VE+L L+D + LF RYRAMF+LR++ +
Sbjct: 145 NSPYDSVDPTPSASTSD----VEELAATLIDASLPLFDRYRAMFSLRNIKTDKSIKALA- 199
Query: 265 XXXXXXKGL-SDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGS 441
+GL + SALFRHE+A+V GQL P + L + L + E MVRHE AEALG+
Sbjct: 200 ------QGLYCEDSALFRHEVAYVLGQLQSPVATQELKDRLLLSTENCMVRHECAEALGA 253
Query: 442 LGEKDGVEDTLRKFLHDKEKVVRESCIVALDIAEYEKGEDAEYA 573
+ ++ E L+++++D+E+VVRESC VALD+AEYE +D +YA
Sbjct: 254 IANEECTE-ILKQYVNDEERVVRESCEVALDMAEYENSDDLQYA 296
Score = 89.7 bits (219), Expect = 5e-17
Identities = 52/141 (36%), Positives = 79/141 (55%), Gaps = 2/141 (1%)
Frame = +1
Query: 139 EAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRH 318
+AE++ G L DT L +R+RA+F LR++ K L+D SAL +H
Sbjct: 9 DAEIDSFGEALNDTKKPLKARFRALFILRNIGCDRSVDWIG-------KCLNDESALLKH 61
Query: 319 EIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKE 498
E+A+ GQ+ + +IP L L + + MVRHEA EALG++ + V+D LRK+ D
Sbjct: 62 ELAYCLGQMQNKHAIPTLVSVLEDEKQEPMVRHEAGEALGAIAD-PSVKDVLRKYAQDPC 120
Query: 499 KVVRESCIVALDIAEY--EKGED 561
V E+C +AL E+ + G+D
Sbjct: 121 PEVSETCQIALGRVEWVEKSGKD 143
>gb|AAC33193.1| (AC005551) R26529_2, partial CDS [Homo sapiens]
Length = 197
Score = 120 bits (299), Expect = 2e-26
Identities = 71/160 (44%), Positives = 90/160 (55%)
Frame = +1
Query: 94 FASIDPAPPMPESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXX 273
+ S+DPAPP E D V L L+D + LF RYRAMFALR+
Sbjct: 39 YLSVDPAPPAEERD----VGRLREALLDESRPLFERYRAMFALRNAGGEEAALALA---- 90
Query: 274 XXXKGLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEK 453
+GL SALFRHE+ +V GQL H A++P L AL+ E MVRHE AEALG++ +
Sbjct: 91 ---EGLHCGSALFRHEVGYVLGQLQHEAAVPQLAAALARCTENPMVRHECAEALGAIA-R 146
Query: 454 DGVEDTLRKFLHDKEKVVRESCIVALDIAEYEKGEDAEYA 573
L+ D E+VVRESC VALD+ E+E G +YA
Sbjct: 147 PACLAALQAHADDPERVVRESCEVALDMYEHETGRAFQYA 186
>emb|CAB68156.1| (AL137081) putative protein [Arabidopsis thaliana]
Length = 304
Score = 101 bits (248), Expect = 2e-20
Identities = 60/154 (38%), Positives = 84/154 (53%)
Frame = +1
Query: 88 SDFASIDPAPPMPESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXX 267
S F S+DPA P + V L + L+D ++ RY A+FALR+
Sbjct: 151 SPFMSVDPAGPAASF---SSVHQLRQVLLDETKGMYERYAALFALRNHGGEEAVSAIVDS 207
Query: 268 XXXXXKGLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLG 447
LS SSAL RHE+A+V GQL ++ L++ L + NE MVRHEAAEALGS+
Sbjct: 208 -------LSASSALLRHEVAYVLGQLQSKTALATLSKVLRDVNEHPMVRHEAAEALGSIA 260
Query: 448 EKDGVEDTLRKFLHDKEKVVRESCIVALDIAEYE 549
++ + L +F D E +V +SC VAL + E+E
Sbjct: 261 DEQSIA-LLEEFSKDPEPIVAQSCEVALSMLEFE 293
Score = 60.5 bits (144), Expect = 3e-08
Identities = 44/137 (32%), Positives = 64/137 (46%)
Frame = +1
Query: 157 LGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIAFVF 336
L +L+D + + R+RA+F+LR+L DSS L HE AF
Sbjct: 17 LCERLVDQSQPISERFRALFSLRNLKGPGPRNALILASR-------DSSNLLAHEAAFAL 69
Query: 337 GQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRES 516
GQ+ +IPAL L++ + + AAEALG++G V + D + VRE+
Sbjct: 70 GQMQDAEAIPALESVLNDMS----LHPIAAEALGAIGLAGNVNILKKSLSSDPAQEVRET 125
Query: 517 CIVALDIAEYEKGEDAE 567
C +AL E DAE
Sbjct: 126 CELALKRIEDMSNVDAE 142
>ref|NP_012597.1| A12.2 subunit of RNA polymerase I; Rpa12p
sp|P32529|RPA9_YEAST DNA-DIRECTED RNA POLYMERASE I 13.7 KD POLYPEPTIDE (A12.2)
pir||A48107 DNA-directed RNA polymerase (EC 2.7.7.6) I chain A12.2 - yeast
(Saccharomyces cerevisiae)
gb|AAA34992.1| (L00708) RNA polymerase I subunit A12.2 [Saccharomyces cerevisiae]
gb|AAB59319.1| (L35564) RNA polymerase I A12.2 subunit [Saccharomyces cerevisiae]
emb|CAA89591.1| (Z49563) ORF YJR063w [Saccharomyces cerevisiae]
gb|AAB39289.1| (L47993) ORF YJR063w [Saccharomyces cerevisiae]
Length = 125
Score = 97.9 bits (240), Expect = 2e-19
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Frame = -1
Query: 1009 MAAIGTLVFCTDCGNLLPATKGTQRNVLRCECCGA---ENRDTGSKVTVTQTKPSDFPSF 839
M+ +G+L+FC DCG+LL + + C C A +++ + KV VT T FPS
Sbjct: 1 MSVVGSLIFCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKV-VTTTADDAFPSS 59
Query: 838 LRQKLQSSVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGN 662
LR K S++K+ L+ +T E CP+CG EE+ Y T+QLRSADEG+TV Y+C CG
Sbjct: 60 LRAKKSVVKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGY 119
Query: 661 SWNENN 644
+ NN
Sbjct: 120 KFRTNN 125
>sp|O94703|RPA9_SCHPO DNA-DIRECTED RNA POLYMERASE I 13.1 KDA POLYPEPTIDE
pir||T40892 dna-directed rna polymerase i subunit - fission yeast
(Schizosaccharomyces pombe)
emb|CAA22541.1| (AL034564) dna-directed rna polymerase i subunit [Schizosaccharomyces
pombe]
dbj|BAA87928.1| (AB023403) RPA12 [Schizosaccharomyces pombe]
dbj|BAA87930.1| (AB023817) SpRPA12 [Schizosaccharomyces pombe]
gb|AAF80580.1|AF219943_1 (AF219943) RNA polymerase I specific subunit Rpa12
[Schizosaccharomyces pombe]
Length = 119
Score = 90.1 bits (220), Expect = 4e-17
Identities = 50/122 (40%), Positives = 72/122 (58%), Gaps = 1/122 (0%)
Frame = -1
Query: 1009 MAAIGTLVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQ 830
M+AIG+L+FC++CGNLL +T +C+ + + V T++ S FPS L
Sbjct: 1 MSAIGSLIFCSECGNLLESTTAQWTTCDQCQSV-YPSEQFANLVVETKSSASAFPSAL-- 57
Query: 829 KLQSSVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWN 653
KL+ S+ VE + +T E CPKCG + + + T+QLRSADEGSTV Y C C ++
Sbjct: 58 KLKHSIVQVESQK-EEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFS 116
Query: 652 ENN 644
NN
Sbjct: 117 TNN 119
>emb|CAB97722.1| (AL160493) probable hypothetical 35.7 Kd protein [Leishmania major]
Length = 289
Score = 85.8 bits (209), Expect = 7e-16
Identities = 44/83 (53%), Positives = 57/83 (68%)
Frame = +1
Query: 298 SSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLR 477
SSALFRHE+AFV GQL P+S PAL AL + EA MVRHEAAEALG++ + L
Sbjct: 204 SSALFRHEVAFVLGQLERPSSQPALIAALKDEEEAPMVRHEAAEALGAIAD-PATLPVLE 262
Query: 478 KFLHDKEKVVRESCIVALDIAEY 546
+ E +VR+SC+VAL++ +Y
Sbjct: 263 SYATHHEPIVRDSCVVALEMHKY 285
Score = 51.2 bits (120), Expect = 2e-05
Identities = 34/91 (37%), Positives = 51/91 (55%), Gaps = 3/91 (3%)
Frame = +1
Query: 301 SALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVE--DTL 474
S L +HE+A+ GQ ++P L L T+ + RHEAAEALG++G ++ +T
Sbjct: 32 SVLLQHELAYNAGQSGREEAVPELERILRTTSYDVVTRHEAAEALGAIGSPLALQVLETH 91
Query: 475 RKFLHDKEKVVRESCIVAL-DIAEYEKGEDAEYA 573
+ E ++RE+C +AL IA E DA A
Sbjct: 92 SAPTTEPEALIRETCELALARIAMKETKGDAAVA 125
>gb|AAC27388.1| (AF027149) similar to ORF YJR070C from S. cerevisiae [Babesia
bovis]
Length = 332
Score = 83.9 bits (204), Expect = 3e-15
Identities = 54/151 (35%), Positives = 81/151 (52%), Gaps = 8/151 (5%)
Frame = +1
Query: 85 SSDFASIDPAPPMPESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXX 264
+S + +IDP P + E + +L + ++D +A L RY A+F +R+
Sbjct: 170 TSAYRAIDPVPCVATEIAEMSILELNKVMLDESAPLHKRYEALFQIRNSGGDEAAVMIGN 229
Query: 265 XXXXXXKGLSDS-SALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGS 441
+SD+ S +FRHE AFV GQ+ A+ L + LSN+ E + RHEAA ALGS
Sbjct: 230 AL------ISDNVSEVFRHECAFVLGQMQSMAAADHLLKCLSNSQEKPIARHEAALALGS 283
Query: 442 L-------GEKDGVEDTLRKFLHDKEKVVRESCIVALDI 537
+++ + L D KVV +SCIVALD+
Sbjct: 284 CAAASNNQSDRNRIIAALEAHKLDSMKVVADSCIVALDV 322
Score = 67.1 bits (161), Expect = 3e-10
Identities = 47/143 (32%), Positives = 69/143 (47%), Gaps = 5/143 (3%)
Frame = +1
Query: 106 DPAPPMPESDKEAEVEDLGRKLMDT-----NADLFSRYRAMFALRDLASXXXXXXXXXXX 270
D A + E D E KL+ T L + +A++ RDL+S
Sbjct: 3 DLATAIAEFDSLNEFSKPDAKLLSTILLSDGVKLSQQLKALYFCRDLSSSECATILKKAL 62
Query: 271 XXXXKGLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGE 450
RHEIA+V GQ + L L +TNE MVRHEAA+A+ ++G+
Sbjct: 63 EVHY------DTFLRHEIAYVIGQAECEEAADVLVRLLEDTNEDPMVRHEAAKAIAAIGD 116
Query: 451 KDGVEDTLRKFLHDKEKVVRESCIVALD 534
K + D L K+ D+ VVR++C +AL+
Sbjct: 117 KTYI-DKLEKYKDDESIVVRDTCRLALE 143
>gb|AAC27391.1| (AF028592) unknown [Babesia bovis]
Length = 269
Score = 73.7 bits (178), Expect = 3e-12
Identities = 49/146 (33%), Positives = 76/146 (51%), Gaps = 8/146 (5%)
Frame = +1
Query: 85 SSDFASIDPAPPMPESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXX 264
+S + +IDP P + E + +L + ++D +A L RY A+F +R+
Sbjct: 122 TSAYRAIDPVPCVATEIAEMSILELNKVMLDESAPLHKRYEALFQIRNSGGDEAAVMIGN 181
Query: 265 XXXXXXKGLSDS-SALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGS 441
+SD+ S +FRHE AFV GQ+ A+ L + LSN+ E + RHEAA ALGS
Sbjct: 182 AL------ISDNVSEVFRHECAFVLGQMQSMAAADHLLKCLSNSQEKPIARHEAALALGS 235
Query: 442 L-------GEKDGVEDTLRKFLHDKEKVVRESCI 522
+++ + L + KVV +SCI
Sbjct: 236 CAAASNNQSDRNRIIAALEAHKLNSMKVVADSCI 269
Score = 66.0 bits (158), Expect = 7e-10
Identities = 34/74 (45%), Positives = 48/74 (63%)
Frame = +1
Query: 313 RHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHD 492
RHEIA+V GQ + L L +TNE MVRHEAAEA+ ++G+K + D L K+ D
Sbjct: 23 RHEIAYVIGQAECEEAADVLVRLLEDTNEDPMVRHEAAEAIAAIGDKTYI-DKLEKYKDD 81
Query: 493 KEKVVRESCIVALD 534
+ VVR++C +AL+
Sbjct: 82 ESIVVRDTCRLALE 95
>sp|Q58548|RPOM_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT M
pir||C64443 transcription-associated protein 'TFIIS' homolog - Methanococcus
jannaschii
gb|AAB99148.1| (U67557) transcription-associated protein ('TFIIS') [Methanococcus
jannaschii]
Length = 108
Score = 64.0 bits (153), Expect = 3e-09
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC C NL+ G L+C CG E + T +K ++ L K + +
Sbjct: 4 FCPKCNNLMLPKDGK----LKCAVCGYEE-----ETTAEGSKEYEYKEHLENK-KEKITV 53
Query: 805 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
+E L+T T CPKCG E + Q R ADE T Y C +CG++W E
Sbjct: 54 IESEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106
>sp|Q56254|RPOM_THECE DNA-DIRECTED RNA POLYMERASE SUBUNIT M
gb|AAA72052.1| (L27650) RNA polymerase [Thermococcus celer]
Length = 110
Score = 60.5 bits (144), Expect = 3e-08
Identities = 36/110 (32%), Positives = 59/110 (52%), Gaps = 4/110 (3%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAE---NRDTGSKVTVTQTKPSDFPSFLRQKLQSS 815
FC CGNL+ + +R V C CG E + + + TV + + ++ K
Sbjct: 3 FCPKCGNLMLPDR--KRKVWVCRSCGYEEPFDEEKDREKTVIKQE-------VKHKPDEG 53
Query: 814 VQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
+ +E+ +L+T T TCPKCG + + +Q R+ DE ST+ Y C +CG++W
Sbjct: 54 IVVIEQ-DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 106
>pir||A71112 probable transcription-associated protein - Pyrococcus horikoshii
dbj|BAA29755.1| (AP000003) 110aa long hypothetical transcription-associated protein
[Pyrococcus horikoshii]
Length = 110
Score = 60.1 bits (143), Expect = 4e-08
Identities = 38/110 (34%), Positives = 51/110 (45%), Gaps = 1/110 (0%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC CG+++ K +R V C CG E + K ++ K V
Sbjct: 4 FCPRCGSIMIPDK--KRGVFVCRKCGYEE-----PINPEDAKAYRRTEEIKHKPDEGVIV 56
Query: 805 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSCE-CGNSW 656
+E+ + T TA TCPKCG E Y VQ R+ DE ST+ Y C+ CG W
Sbjct: 57 IEQ-DFSTLPTAKVTCPKCGYHEAWYWEVQTRAGDEPSTIFYKCKRCGYVW 106
>pir||H75048 DNA-directed RNA polymerase (EC 2.7.7.6) chain M PAB1464 -
Pyrococcus abyssi (strain Orsay)
emb|CAB50285.1| (AJ248287) DNA-DIRECTED RNA POLYMERASE SUBUNIT M (EC 2.7.7.6).
[Pyrococcus abyssi]
Length = 110
Score = 59.7 bits (142), Expect = 5e-08
Identities = 38/110 (34%), Positives = 51/110 (45%), Gaps = 1/110 (0%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC CG+++ K +R V C CG E + K ++ K V
Sbjct: 4 FCPKCGSIMIPDK--KRGVFVCRRCGYEE-----PINPEDAKAYKRTEEVKHKPDEGVIV 56
Query: 805 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSCE-CGNSW 656
VE+ + T TA TCPKCG E Y +Q R+ DE ST+ Y C+ CG W
Sbjct: 57 VEQ-DFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFYKCKRCGYVW 106
>emb|CAB82967.1| (AL162507) putative protein [Arabidopsis thaliana]
Length = 342
Score = 58.6 bits (139), Expect = 1e-07
Identities = 42/161 (26%), Positives = 79/161 (48%), Gaps = 5/161 (3%)
Frame = +1
Query: 76 TFCSSDFASIDPAPPM-----PESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASX 240
TF + +ID + P P++ + + + L++ + + R A+FALR+
Sbjct: 179 TFYVTRRGAIDSSAPAESKAYPKAANISSIHSMRESLLEETEEDYYRRLALFALRNHGGE 238
Query: 241 XXXXXXXXXXXXXXKGLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHE 420
+ L S++ R E AFV GQL +I +L++ L + E MVR E
Sbjct: 239 DAINVII-------ESLGVESSMIRIEAAFVLGQLESKTAIASLSKILRDVKEHPMVRVE 291
Query: 421 AAEALGSLGEKDGVEDTLRKFLHDKEKVVRESCIVALDIAEYEKGE 558
AA+ALG + ++ + L++ D + ++ + C +L I E++ +
Sbjct: 292 AAKALGFIADEKS-REVLQELSGDLDPIIAKGCDSSLSILEFKNSK 336
>ref|NP_055411.1| zinc ribbon domain containing, 1
gb|AAF40469.1|AF024617_1 (AF024617) transcription-associated zinc ribbon protein [Homo
sapiens]
Length = 126
Score = 58.2 bits (138), Expect = 1e-07
Identities = 41/106 (38%), Positives = 50/106 (46%), Gaps = 2/106 (1%)
Frame = -1
Query: 991 LVFCTDCGNLLPATKGTQRNVLRCECCG--AENRDTGSKVTVTQTKPSDFPSFLRQKLQS 818
L FC+DCG++LP G Q V C CG RD KV T Q +
Sbjct: 17 LDFCSDCGSVLPLP-GAQDTVT-CIRCGFNINVRDFEGKVVKTSV-------VFHQLGTA 67
Query: 817 SVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC 674
SVE+ CP+CG E + Y T Q+RSADEG TV Y+C
Sbjct: 68 MPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTC 115
>sp|Q07271|RPOM_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT M
Length = 202
Score = 57.4 bits (136), Expect = 2e-07
Identities = 31/112 (27%), Positives = 51/112 (44%), Gaps = 1/112 (0%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC CG+++ K + V +C C + + + +T K ++ V +
Sbjct: 94 FCPKCGSMMMPRKENGKTVYKCSKCAYIDTENQKEAKITTVIKHS------AKAKTLVLA 147
Query: 805 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
+ N + T +CP CG +E + +Q RSADE +T Y C +CG W E
Sbjct: 148 SDMPNPGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 200
>pir||S33694 transcription elongation factor tfIIs - Sulfolobus acidocaldarius
emb|CAA50073.1| (X70805) transcription associated protein [Sulfolobus
acidocaldarius]
Length = 111
Score = 57.4 bits (136), Expect = 2e-07
Identities = 31/112 (27%), Positives = 51/112 (44%), Gaps = 1/112 (0%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC CG+++ K + V +C C + + + +T K ++ V +
Sbjct: 3 FCPKCGSMMMPRKENGKTVYKCSKCAYIDTENQKEAKITTVIKHS------AKAKTLVLA 56
Query: 805 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
+ N + T +CP CG +E + +Q RSADE +T Y C +CG W E
Sbjct: 57 SDMPNPGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109
>pir||A55263 transcription-associated protein - Thermococcus celer
Length = 110
Score = 56.2 bits (133), Expect = 6e-07
Identities = 35/110 (31%), Positives = 58/110 (51%), Gaps = 4/110 (3%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAE---NRDTGSKVTVTQTKPSDFPSFLRQKLQSS 815
FC CGNL+ + +R V CG E + + + TV + + ++ K
Sbjct: 3 FCPKCGNLMLPDR--KRKVWVXRSCGYEEPFDEEKDREKTVIKQE-------VKHKPDEG 53
Query: 814 VQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
+ +E+ +L+T T TCPKCG + + +Q R+ DE ST+ Y C +CG++W
Sbjct: 54 IVVIEQ-DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 106
>gb|AAF55918.1| (AE003736) CG13418 gene product [Drosophila melanogaster]
Length = 120
Score = 55.4 bits (131), Expect = 1e-06
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC CG++LP + + NV+ C C E + V + S+F S V +
Sbjct: 10 FCPSCGSILPELQ-VKGNVI-CYNCKKEFQPD-----VYSGEKSEFTIHFNTYDPSKVFN 62
Query: 805 VEKHNLQTES---TAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNENN 644
K ++++ CPKC +++ Y T+QLRSADEG TV ++C +C +EN+
Sbjct: 63 RTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
>emb|CAB66386.1| (AJ271332) archaeal transcription factor S [Methanococcus
thermolithotrophicus]
Length = 105
Score = 54.7 bits (129), Expect = 2e-06
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC C N++ G L+C CG E + G++ + L++K+++ Q
Sbjct: 4 FCPKCNNIMLPKNGR----LKCTVCGFEE-ELGNRTEEYE---------LKEKIEAKKQE 49
Query: 805 VEK-HNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
V ++ T T CP CG E + Q R ADE T Y C +CG++W E
Sbjct: 50 VTVIEDVDTLPTTRIECPSCGNMEASWWLQQTRCADEPETRFYKCKKCGHTWRE 103
>sp|O29033|RPOM_ARCFU DNA-DIRECTED RNA POLYMERASE SUBUNIT M
pir||B69404 transcription-associated protein TFIIS homolog - Archaeoglobus
fulgidus
gb|AAB90009.1| (AE001019) transcription-associated protein TFIIS [Archaeoglobus
fulgidus]
Length = 103
Score = 53.1 bits (125), Expect = 5e-06
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC C +L+ Q + L C CG E S+ V + ++ + V
Sbjct: 3 FCPKCKSLMIY----QGDKLVCRKCGYEKEADDSEELVIKV----------ERNKEDVPV 48
Query: 805 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
+E NL+T T CP CG E + QLR+ADE + C +CG +W E
Sbjct: 49 IEGENLKTLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCTKCGKTWRE 101
>gb|AAB82597.1| (AF026272) YJR070c-like protein [Babesia bigemina]
Length = 121
Score = 52.7 bits (124), Expect = 6e-06
Identities = 35/109 (32%), Positives = 49/109 (44%)
Frame = +1
Query: 127 ESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSA 306
E + + E L + L + L + RA++ RDL S A
Sbjct: 15 EEFSKPDAELLSKILFSPDVKLSLQLRALYFCRDLKSSECATLLKKALDVHY------DA 68
Query: 307 LFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEK 453
RHEIA+V GQ + L + L + NE MVRHEAAEA+ ++G K
Sbjct: 69 FLRHEIAYVIGQAGCEEASDVLVKLLEDENEDPMVRHEAAEAVAAIGGK 117
>gb|AAF79907.1|AC022472_16 (AC022472) Contains a weak similarity to transcription elongation
factor S-II from Drosophila melanogaster gi|135660 and
contains a transcription factor S-II domain PF|01096.
[Arabidopsis thaliana]
Length = 122
Score = 51.9 bits (122), Expect = 1e-05
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Frame = -1
Query: 949 KGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTA 770
K + ++L C CG + + + TK ++ P L + ++ + ++K+ T +T
Sbjct: 29 KSRESDILFCNLCG-------TMLVLKSTKYAECP--LCETTRNGKEIIDKNLAYTVTTE 79
Query: 769 -HETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
+ C KC E+ YTT Q RSADEG T Y+C CG+ + E
Sbjct: 80 IKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCGHRFTE 121
>gb|AAF57437.1| (AE003791) CG10438 gene product [Drosophila melanogaster]
Length = 108
Score = 50.0 bits (117), Expect = 4e-05
Identities = 35/114 (30%), Positives = 48/114 (41%), Gaps = 3/114 (2%)
Frame = -1
Query: 991 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSV 812
L FC CGN+L + T + C C ++ T T F R K V
Sbjct: 2 LFFCPSCGNILIIEEDTNCHRFTCNTCPYISKIRRKISTKT---------FPRLKEVDHV 52
Query: 811 QSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 650
+ +ST E CP CG + + +Q RSADE T Y C EC ++W +
Sbjct: 53 LGGKAAWENVDSTDAE-CPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108
>ref|NP_057394.1| RNA polymerase III subunit (hRPC11)
gb|AAD31424.1|AF126531_1 (AF126531) putative DNA-directed RNA polymerase III C11 subunit
[Homo sapiens]
gb|AAF18268.1|AF051316_1 (AF051316) RNA polymerase III subunit [Homo sapiens]
Length = 108
Score = 49.6 bits (116), Expect = 6e-05
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Frame = -1
Query: 991 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSV 812
L+FC CGN L +G + + C C + T VT K + + K V
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRK---VTNRK------YPKLKEVDDV 52
Query: 811 QSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 650
+STA E+CPKC + +Q RSADE T Y C +CG+ W +
Sbjct: 53 LGGAAAWENVDSTA-ESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>ref|NP_010330.1| TFIIS-like small Pol III subunit C11; Rpc11p
sp|Q04307|RPCZ_YEAST DNA-DIRECTED RNA POLYMERASES III 12.5 KDA POLYPEPTIDE
pir||S54031 hypothetical protein YDR045c - yeast (Saccharomyces cerevisiae)
emb|CAA89076.1| (Z49209) unknown [Saccharomyces cerevisiae]
gb|AAD12060.1| (AF108188) RNA polymerase III C11 subunit [Saccharomyces
cerevisiae]
Length = 110
Score = 48.8 bits (114), Expect = 9e-05
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Frame = -1
Query: 991 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPS-----FLRQK 827
L FC C N+L T G D+G ++ P +FP + R+K
Sbjct: 2 LSFCPSCNNMLLITSG----------------DSGVYTLACRSCPYEFPIEGIEIYDRKK 45
Query: 826 L-QSSVQSVEKHNLQTESTAHETCPK---CGREEVKYTTVQLRSADEGSTVIYSC-ECGN 662
L + V V CP CG E + +Q+RSADE T Y C CG+
Sbjct: 46 LPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGH 105
Query: 661 SWNEN 647
W EN
Sbjct: 106 RWKEN 110
>gb|AAD15481.1| (AC006266) putative DNA-directed RNA polymerase subunit
[Arabidopsis thaliana]
emb|CAB77946.1| (AL161508) putative DNA-directed RNA polymerase subunit
[Arabidopsis thaliana]
Length = 106
Score = 48.4 bits (113), Expect = 1e-04
Identities = 30/112 (26%), Positives = 50/112 (43%), Gaps = 2/112 (1%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC CGNLL G C N + ++ Q ++ S++
Sbjct: 3 FCPTCGNLLRYEGGGSSRFFCSTCPYVANIERRVEIKKKQLL-----------VKKSIEP 51
Query: 805 V-EKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
V K ++ T + CP+CG ++ + ++Q+RSADE + Y C +C +W E
Sbjct: 52 VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105
>gb|AAF89697.1|AF170279_1 (AF170279) phycoerythrobilin lyase subunit CpeF [Fremyella
diplosiphon]
Length = 303
Score = 48.4 bits (113), Expect = 1e-04
Identities = 31/91 (34%), Positives = 51/91 (55%)
Frame = +1
Query: 289 LSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVED 468
L+D AL R E A GQ+++P S+P L A+ +T+ VR A +LG +G++
Sbjct: 214 LTDPEALIRTEAAAALGQVNYPPSVPHLILAIHDTD--LDVRKAAINSLGKIGDR-AANK 270
Query: 469 TLRKFLHDKEKVVRESCIVALDIAEYEKGED 561
L+ L+D+++VVR +A+ E + ED
Sbjct: 271 PLQALLNDEQEVVRVLAKLAIAQIERQSEED 301
>pdb|1QYP| Thermococcus Celer Rpb9, Nmr, 25 Structures
Length = 57
Score = 48.4 bits (113), Expect = 1e-04
Identities = 20/48 (41%), Positives = 31/48 (63%), Gaps = 1/48 (2%)
Frame = -1
Query: 799 KHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
+ +L+T T TCPKCG + + +Q R+ DE ST+ Y C +CG++W
Sbjct: 5 EQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53
>emb|CAA11392.1| (AJ223472) transcription elongation factor TFIIS.h [Mus musculus]
Length = 347
Score = 47.3 bits (110), Expect = 3e-04
Identities = 30/101 (29%), Positives = 44/101 (42%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P G +RNVL GA + + +K+T + + Q +++ +
Sbjct: 247 PRNPGLRRNVLS----GAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 302
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
+T C KC ++ Y VQ RSADE T C ECGN W
Sbjct: 303 TTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 344
>pir||E71618 Zn-ribbon transcription factor (TFIIS family) PFB0290c - malaria
parasite (Plasmodium falciparum)
gb|AAC71847.1| (AE001385) Zn-ribbon transcription factor (TFIIS family)
[Plasmodium falciparum]
Length = 106
Score = 47.3 bits (110), Expect = 3e-04
Identities = 21/48 (43%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
Frame = -1
Query: 793 NLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
N + S CPKC +E + T+Q+RSADE ST+ Y C +C W E
Sbjct: 58 NNKNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWKE 106
>pir||PS0180 transcription elongation factor S-II-related protein L122, hepatic
- mouse (fragment)
Length = 289
Score = 47.3 bits (110), Expect = 3e-04
Identities = 30/101 (29%), Positives = 44/101 (42%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P G +RNVL GA + + +K+T + + Q +++ +
Sbjct: 189 PRNPGLRRNVLS----GAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 244
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
+T C KC ++ Y VQ RSADE T C ECGN W
Sbjct: 245 TTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 286
>emb|CAA11393.1| (AJ223473) transcription elongation factor TFIIS.h [Homo sapiens]
Length = 320
Score = 46.5 bits (108), Expect = 5e-04
Identities = 30/101 (29%), Positives = 43/101 (41%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P G +RNVL GA + +K+T + + Q +++ +
Sbjct: 220 PRNPGLRRNVLS----GAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 275
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
+T C KC ++ Y VQ RSADE T C ECGN W
Sbjct: 276 TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 317
>pir||S26831 transcription elongation factor IIS - human
emb|CAA40484.1| (X57198) transcription elongation factor [Homo sapiens]
Length = 280
Score = 46.5 bits (108), Expect = 5e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
++NVL CG D +++T + + + + +++ + T T
Sbjct: 186 RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 241
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 277
>gb|AAA40418.1| (M18209) transcription factor S-II [Mus musculus]
Length = 266
Score = 46.5 bits (108), Expect = 5e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
++NVL CG D +++T + + + + +++ + T T
Sbjct: 172 RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 227
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 228 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 263
>gb|AAF60910.1| (AC024880) contains similarity to SW:RPB9_DROME [Caenorhabditis
elegans]
Length = 486
Score = 46.5 bits (108), Expect = 5e-04
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC +C N+L + + VL C E+R+ + P + + L ++ Q
Sbjct: 377 FCPECNNMLYPREDKESRVLMYSCRNCEHREVAAN-------PCIYVNKLVHEIDELTQI 429
Query: 805 VEK--HNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 650
V H+ T CP CG+ + + Q + A+E + Y C +C + W E
Sbjct: 430 VGDIIHDPTLPKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRWTE 486
>gb|AAF71710.1|AF220261_1 (AF220261) transcription elongation factor TFIIS [Drosophila
virilis]
Length = 324
Score = 46.5 bits (108), Expect = 5e-04
Identities = 27/101 (26%), Positives = 43/101 (41%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P G + N + CGA + +K+T + + + ++ ++ + +Q
Sbjct: 224 PKNPGLRSNFM----CGAVSAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGT 279
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
T C KC + Y +Q RSADE T C ECGN W
Sbjct: 280 KTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 321
>dbj|BAA00768.1| (D00925) ORF2 [Mus musculus]
Length = 235
Score = 46.5 bits (108), Expect = 5e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
++NVL CG D +++T + + + + +++ + T T
Sbjct: 141 RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 196
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 197 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 232
>sp|P23713|TFSL_MOUSE TRANSCRIPTION FACTOR S-II-RELATED PROTEIN 3
pir||JX0167 transcription elongation factor S-II-related protein L121, hepatic
- mouse
Length = 235
Score = 46.5 bits (108), Expect = 5e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
++NVL CG D +++T + + + + +++ + T T
Sbjct: 141 RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 196
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 197 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 232
>ref|NP_035671.1| transcription elongation factor A (SII), 1
sp|P10712|TFS2_MOUSE TRANSCRIPTION ELONGATION FACTOR S-II (TRANSCRIPTION ELONGATION
FACTOR A)
pir||A29950 transcription elongation factor IIS - mouse
gb|AAA40419.1| (M18210) transcription factor S-II [Mus musculus]
Length = 301
Score = 46.5 bits (108), Expect = 5e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
++NVL CG D +++T + + + + +++ + T T
Sbjct: 207 RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 262
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>pir||JC1170 transcription elongation factor SII - human
gb|AAA61138.1| (M81601) transcription elongation factor SII [Homo sapiens]
Length = 301
Score = 46.5 bits (108), Expect = 5e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
++NVL CG D +++T + + + + +++ + T T
Sbjct: 207 RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 262
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>ref|NP_006747.1| transcription elongation factor A (SII), 1
sp|P23193|TFS2_HUMAN TRANSCRIPTION ELONGATION FACTOR S-II (TRANSCRIPTION ELONGATION
FACTOR A)
pir||S17361 transcription elongation factor IIS (clone pHIIS 1) - human
emb|CAA44470.1| (X62585) transcription elongation factor [Homo sapiens]
Length = 301
Score = 46.5 bits (108), Expect = 5e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
++NVL CG D +++T + + + + +++ + T T
Sbjct: 207 RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 262
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>pir||A53004 transcription elongation factor S-II - rat
dbj|BAA02310.1| (D12927) transcription elongation factor S-II [Rattus sp.]
Length = 299
Score = 46.1 bits (107), Expect = 6e-04
Identities = 29/97 (29%), Positives = 43/97 (43%), Gaps = 1/97 (1%)
Frame = -1
Query: 946 GTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAH 767
G +RNVL CGA + +T + + + + +++ + T
Sbjct: 203 GLRRNVL----CGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDL 258
Query: 766 ETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
TC KC ++ YT VQ RS+DE T C ECGN W
Sbjct: 259 FTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>ref|NP_033352.1| transcription elongation factor A (SII), 2
pir||JC5430 transcription elongation factor S-II-T1, testis-specific - mouse
dbj|BAA19752.1| (D86081) S-II-T1 [Mus musculus]
dbj|BAA82313.1| (AB010271) transcription elongation factor [Mus musculus]
Length = 299
Score = 46.1 bits (107), Expect = 6e-04
Identities = 29/97 (29%), Positives = 43/97 (43%), Gaps = 1/97 (1%)
Frame = -1
Query: 946 GTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAH 767
G +RNVL CGA + +T + + + + +++ + T
Sbjct: 203 GLRRNVL----CGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDL 258
Query: 766 ETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
TC KC ++ YT VQ RS+DE T C ECGN W
Sbjct: 259 FTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>pir||S55899 transcription elongation factor TfIIS - fruit fly (Drosophila
melanogaster)
Length = 313
Score = 46.1 bits (107), Expect = 6e-04
Identities = 27/101 (26%), Positives = 42/101 (40%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P G + N + CGA +K+T + + + ++ ++ + +Q
Sbjct: 213 PKNPGLRGNFM----CGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGT 268
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
T C KC + Y +Q RSADE T C ECGN W
Sbjct: 269 KTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310
>sp|P20232|TFS2_DROME TRANSCRIPTION ELONGATION FACTOR S-II (RNA POLYMERASE II ELONGATION
FACTOR DMS-II) (TFIIS)
pir||S12106 transcription elongation factor DmS-II - fruit fly (Drosophila
melanogaster)
emb|CAA37710.1| (X53670) RNA polymerase II elongation factor DmS-II [Drosophila
melanogaster]
gb|AAA92864.2| (L26091) transcription elongation factor [Drosophila melanogaster]
gb|AAF53436.1| (AE003646) TfIIS gene product [Drosophila melanogaster]
Length = 313
Score = 46.1 bits (107), Expect = 6e-04
Identities = 27/101 (26%), Positives = 42/101 (40%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P G + N + CGA +K+T + + + ++ ++ + +Q
Sbjct: 213 PKNPGLRGNFM----CGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGT 268
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
T C KC + Y +Q RSADE T C ECGN W
Sbjct: 269 KTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310
>gb|AAF97332.1|AC023628_13 (AC023628) Similar to DNA-directed RNA polymerase subunit M
[Arabidopsis thaliana]
Length = 106
Score = 46.1 bits (107), Expect = 6e-04
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC CGNLL G C C V Q + L K +S
Sbjct: 3 FCPTCGNLLRYEGGGNSRFF-CSTC--------PYVAYIQRQVEIKKKQLLVK-KSIEAV 52
Query: 805 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
V K ++ T + CP+CG ++ + ++Q+RSADE + Y C +C +W E
Sbjct: 53 VTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105
>pir||S72365 transcription elongation factor TFIIS.oB - African clawed frog
Length = 303
Score = 46.1 bits (107), Expect = 6e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
+RNVL CG D +++T + + + + +++ + T +
Sbjct: 209 RRNVL----CGNIAPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTETDLFS 264
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 265 CGKCKKKNCTYTQVQTRSADEPMTTFVFCNECGNRW 300
>gb|AAF44916.1|AE003406_121 (AE003416) symbol=TfIIS; synonym=BG:DS00929.12;
match=method:''sim4'', score:''990.0'',
desc:''GenBank::L26091:Drosophila melanogaster
transcription elongation factor (TfIIS) gene, complete
cds. CDS:1124..1915; PID:g416355.'',
species:''Drosophila mela>
Length = 263
Score = 46.1 bits (107), Expect = 6e-04
Identities = 27/101 (26%), Positives = 42/101 (40%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P G + N + CGA +K+T + + + ++ ++ + +Q
Sbjct: 163 PKNPGLRGNFM----CGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGT 218
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
T C KC + Y +Q RSADE T C ECGN W
Sbjct: 219 KTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 260
>pir||S34159 transcription elongation factor IIS - human
emb|CAA51940.1| (X73534) transcription elongation factor [Homo sapiens]
Length = 301
Score = 46.1 bits (107), Expect = 6e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
++NVL CG D +++T + + + + +++ + T T
Sbjct: 207 RKNVL----CGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQTDLFT 262
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRW 298
>emb|CAA24928.1| (X00047) reading frame PPR2 [Saccharomyces cerevisiae]
Length = 128
Score = 45.7 bits (106), Expect = 8e-04
Identities = 24/64 (37%), Positives = 38/64 (58%), Gaps = 5/64 (7%)
Frame = -1
Query: 847 PSFLRQKLQS----SVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIY 680
P+ L+QK++ ++ + + ++ T TC KC ++V Y +Q RSADE T
Sbjct: 57 PAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFC 116
Query: 679 SCE-CGNSW 656
+CE CGN W
Sbjct: 117 TCEACGNRW 125
>gb|AAA34580.1| (M60770) DST1 [Saccharomyces cerevisiae]
gb|AAA88734.1| (M36724) DNA strand transferase alpha [Saccharomyces cerevisiae]
Length = 309
Score = 45.7 bits (106), Expect = 8e-04
Identities = 24/64 (37%), Positives = 38/64 (58%), Gaps = 5/64 (7%)
Frame = -1
Query: 847 PSFLRQKLQS----SVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIY 680
P+ L+QK++ ++ + + ++ T TC KC ++V Y +Q RSADE T
Sbjct: 238 PAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFC 297
Query: 679 SCE-CGNSW 656
+CE CGN W
Sbjct: 298 TCEACGNRW 306
>ref|NP_011472.1| RNA polymerase II elongation factor; Dst1p
sp|P07273|TFS2_YEAST TRANSCRIPTION ELONGATION FACTOR S-II (DNA STRAND TRANSFER PROTEIN
ALPHA) (STP-ALPHA) (DNA STRAND TRANSFERASE 1)
(PYRIMIDINE PATHWAY REGULATORY PROTEIN 2)
pir||A42921 transcription elongation factor S-II - yeast (Saccharomyces
cerevisiae)
dbj|BAA02046.1| (D12478) transcriptional elongation factor S-II [Saccharomyces
cerevisiae]
emb|CAA96744.1| (Z72565) ORF YGL043w [Saccharomyces cerevisiae]
Length = 309
Score = 45.7 bits (106), Expect = 8e-04
Identities = 24/64 (37%), Positives = 38/64 (58%), Gaps = 5/64 (7%)
Frame = -1
Query: 847 PSFLRQKLQS----SVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIY 680
P+ L+QK++ ++ + + ++ T TC KC ++V Y +Q RSADE T
Sbjct: 238 PAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFC 297
Query: 679 SCE-CGNSW 656
+CE CGN W
Sbjct: 298 TCEACGNRW 306
>emb|CAA66256.1| (X97666) TFIIS elongation factor [Xenopus laevis]
Length = 303
Score = 45.7 bits (106), Expect = 8e-04
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
+RNVL CG D +++T + + + + +++ + T +
Sbjct: 209 RRNVL----CGNIAPDFFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTETDLFS 264
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C ECGN W
Sbjct: 265 CGKCKKKNCTYTQVQTRSADEPMTTFVFCNECGNRW 300
>sp|O13896|RPCZ_SCHPO DNA-DIRECTED RNA POLYMERASES III 12.5 KD POLYPEPTIDE
pir||T38145 transcription elongation factor - fission yeast
(Schizosaccharomyces pombe)
emb|CAB16575.1| (Z99295) dna-directed rna polymerase iii 12.5 kd polypeptide
[Schizosaccharomyces pombe]
gb|AAD03488.1| (AF027823) RNA polymerase subunit [Schizosaccharomyces pombe]
gb|AAD31425.1|AF126532_1 (AF126532) putative DNA-directed RNA polymerase III C11 subunit
[Schizosaccharomyces pombe]
Length = 109
Score = 45.3 bits (105), Expect = 0.001
Identities = 37/113 (32%), Positives = 50/113 (43%), Gaps = 13/113 (11%)
Frame = -1
Query: 985 FCTDCGN-LLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFP--SFLRQKLQSS 815
FC CGN L+ A RN C C P FP +FL + + +
Sbjct: 3 FCPTCGNHLIVAVDEEGRNAFDCRTC-----------------PYHFPISTFLYSRHEFA 45
Query: 814 VQSVE---------KHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECG 665
+ V+ + N QTE T T KC + +Q+RSADE + Y C +C
Sbjct: 46 QKEVDDVLGGEEAFESNQQTEVTCENT--KCDNNRAYFFQLQIRSADEPMSTFYRCTKCK 103
Query: 664 NSWNEN 647
W EN
Sbjct: 104 FQWREN 109
>pir||T19321 hypothetical protein C15H11.8 - Caenorhabditis elegans
emb|CAB02739.1| (Z81035) predicted using Genefinder~Similarity to Yeast
DNA-directed RNA polymerase I 13.7 KD polypeptide
(SW:P32529) [Caenorhabditis elegans]
Length = 119
Score = 44.9 bits (104), Expect = 0.001
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -1
Query: 781 ESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC 674
++ C KCG + Y+T+Q RSADEG TV Y+C
Sbjct: 73 DAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTC 108
>sp|P23881|TFSM_MOUSE TRANSCRIPTION FACTOR S-II-RELATED PROTEIN 4
dbj|BAA28177.1| (D00926) ORF [Mus musculus]
Length = 292
Score = 44.9 bits (104), Expect = 0.001
Identities = 29/101 (28%), Positives = 43/101 (41%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P G +RNVL GA + + +K+T + + Q +++ +
Sbjct: 192 PRNPGLRRNVLS----GAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 247
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
+T C KC ++ Y VQ RSAD T C ECGN W
Sbjct: 248 TTDLLRCSKCKKKNCTYNQVQTRSADAPMTTFVLCNECGNRW 289
>gb|AAC60115.1| (U57837) transcription elongation factor [Xenopus laevis]
Length = 292
Score = 44.9 bits (104), Expect = 0.001
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = -1
Query: 808 SVEKHNL-QTESTAHE--TCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
S+++H + +T T + TC KC ++ YT VQ RSADE T C ECGN W
Sbjct: 235 SIQEHQMGKTGGTQSDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 289
>pir||G72738 probable DNA-directed RNA polymerase subunit M APE0442 - Aeropyrum
pernix (strain K1)
dbj|BAA79403.1| (AP000059) 104aa long hypothetical DNA-directed RNA polymerase
subunit M [Aeropyrum pernix]
Length = 104
Score = 44.9 bits (104), Expect = 0.001
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -1
Query: 763 TCPKCGREEVKYTTVQLRSADEGSTVIYSCE-CGNSWNE 650
TCPKCG +EV + +Q RSADE T Y C+ C +W E
Sbjct: 64 TCPKCGHDEVYFWMMQTRSADEPMTRFYRCKRCRYTWRE 102
>gb|AAF36076.1| (AC024214) contains similarity to Pfam family PF01096
(Transcription factor S-II (TFIIS)), score=65.4,
E=1.2e-15, N=1 [Caenorhabditis elegans]
Length = 108
Score = 44.5 bits (103), Expect = 0.002
Identities = 35/114 (30%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Frame = -1
Query: 991 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSV 812
L FC +CG +L G Q C C VTQT S L+
Sbjct: 2 LTFCPECGCVLQIESGEQCMRFSCPACPYV-------CPVTQTVTSRIYPKLKDIDDVLG 54
Query: 811 QSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 650
N Q ETCP C + +Q RSADE ST+ Y C C + W +
Sbjct: 55 GPGAWANAQVTD---ETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108
>ref|NP_003186.1| transcription elongation factor A (SII), 2
pir||JC4577 transcription elongation factor T1 - human
dbj|BAA09089.1| (D50495) transcription elongation factor S-II, hS-II-T1 [Homo
sapiens]
prf||2204253A transcription elongation factor S-II [Homo sapiens]
Length = 299
Score = 44.5 bits (103), Expect = 0.002
Identities = 28/95 (29%), Positives = 42/95 (43%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
+RNVL CGA + +T + + + + +++ + T T
Sbjct: 205 RRNVL----CGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFT 260
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RS+DE T C ECGN W
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>pir||JC4809 transcriptional factor TFIIS - African clawed frog
pir||S72364 transcription elongation factor TFIIS.oA - African clawed frog
emb|CAA66255.1| (X97658) TFIIS elongation factor [Xenopus laevis]
dbj|BAA11672.1| (D82999) transcriptional factor [Xenopus laevis]
Length = 303
Score = 44.1 bits (102), Expect = 0.002
Identities = 27/95 (28%), Positives = 42/95 (43%), Gaps = 1/95 (1%)
Frame = -1
Query: 940 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 761
+RNVL CG D ++++ + + + + +++ + T T
Sbjct: 209 RRNVL----CGNIAPDLFARMSAEEMASDELKEMRKNLTKEAIREHQMARTGGTETDLFT 264
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KC ++ YT VQ RSADE T C CGN W
Sbjct: 265 CGKCKKKNCTYTQVQTRSADEPMTTFVFCNNCGNRW 300
>gb|AAC64680.1| (AF039948) transcription elongation factor S-II [Xenopus laevis]
Length = 121
Score = 43.8 bits (101), Expect = 0.003
Identities = 27/101 (26%), Positives = 40/101 (38%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P ++NVL CG + + +T + + Q +++ +
Sbjct: 21 PKNPNLRKNVL----CGVVTPQSIATMTAEEMASDELRELRNTMTQEAIREHQMAKTGGT 76
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
T C KC ++ Y VQ RSADE T C ECGN W
Sbjct: 77 QTDLLQCEKCKKKNCSYNQVQTRSADEPMTTFVLCNECGNRW 118
>gb|AAC64679.1| (AF039947) transcription elongation factor S-II [Xenopus laevis]
Length = 289
Score = 43.8 bits (101), Expect = 0.003
Identities = 27/101 (26%), Positives = 40/101 (38%), Gaps = 1/101 (0%)
Frame = -1
Query: 958 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 779
P ++NVL CG + + +T + + Q +++ +
Sbjct: 189 PKNPNLRKNVL----CGVVTPQSIATMTAEEMASDELRELRNTMTQEAIREHQMAKTGGT 244
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
T C KC ++ Y VQ RSADE T C ECGN W
Sbjct: 245 QTDLLQCEKCKKKNCSYNQVQTRSADEPMTTFVLCNECGNRW 286
>dbj|BAB01057.1| (AB023041) contains similarity to transcription-associated zinc
ribbon protein~gene_id:MPE11.11 [Arabidopsis thaliana]
Length = 119
Score = 43.4 bits (100), Expect = 0.004
Identities = 32/113 (28%), Positives = 50/113 (43%), Gaps = 2/113 (1%)
Frame = -1
Query: 988 VFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQ 809
+FC CG +L ++ EC + + + + +R++L S+
Sbjct: 10 LFCNLCGTML-----VLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLF 64
Query: 808 SVEKHNLQTE-STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
EK + E + C KC E+ YTT Q RSADEG T Y+C C + + E
Sbjct: 65 G-EKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118
>pdb|1TFI| Transcriptional Elongation Factor Sii (Tfiis, Nucleic-Acid
Binding Domain) (Nmr, 12 Structures)
Length = 50
Score = 43.4 bits (100), Expect = 0.004
Identities = 20/36 (55%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
Frame = -1
Query: 763 TCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
TC KC ++ YT VQ RSADE T C ECGN W
Sbjct: 11 TCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47
>emb|CAB52702.1| (AJ001230) bilin biosynthesis protein [Prochlorococcus marinus]
Length = 298
Score = 42.6 bits (98), Expect = 0.007
Identities = 28/84 (33%), Positives = 43/84 (50%)
Frame = +1
Query: 286 GLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVE 465
GL D+ + R + G + PASIP L EAL + + R AA+ L +G+ +
Sbjct: 51 GLGDNRGMLRRTFSESLGAIG-PASIPELREALLKSPNVT-TRRAAAKTLKLVGDPSALP 108
Query: 466 DTLRKFLHDKEKVVRESCIVALDI 537
D L ++DK+ VV+ S A+ I
Sbjct: 109 DLLEALINDKDPVVQGSSAGAIAI 132
>emb|CAB62850.1| (AL035475) putative transcription factor [Plasmodium falciparum]
Length = 320
Score = 42.2 bits (97), Expect = 0.009
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 769 HETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNENN 644
+E C CG + + + +Q RSADEGST+IY C C NN
Sbjct: 278 YEKCLDCGNDFLHFINIQTRSADEGSTIIYFCPNCKKQTTVNN 320
>sp|P52652|TFS2_CAEEL PUTATIVE TRANSCRIPTION ELONGATION FACTOR S-II (TFIIS)
pir||T25250 hypothetical protein T24H10.1 - Caenorhabditis elegans
emb|CAA90943.1| (Z54216) similar to transcription factor S-II~cDNA EST yk329d10.5
comes from this gene~cDNA EST yk473f9.5 comes from this
gene [Caenorhabditis elegans]
Length = 308
Score = 42.2 bits (97), Expect = 0.009
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
C KCG++ YT +Q RS+DE T C ECGN W
Sbjct: 270 CGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRW 305
>dbj|BAA33021.1| (AB007988) RNA polymerase II subunit 9 [Schizosaccharomyces pombe]
emb|CAB66313.1| (AL136521) RNA polymerase II subunit 9 [Schizosaccharomyces pombe]
Length = 113
Score = 41.0 bits (94), Expect = 0.021
Identities = 30/112 (26%), Positives = 49/112 (42%), Gaps = 6/112 (5%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSS--V 812
+C +C N+L + VLR C + + + V R +LQSS
Sbjct: 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKV-----------YRHELQSSNVE 54
Query: 811 QSVEKHNLQTEST---AHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
+ H+ T+ T + + CP+C + E + R D T+IY C CG ++ E
Sbjct: 55 NTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112
>sp|O27369|RPOM_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT M
pir||F69041 transcription elongation factor TFIIS - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85792.1| (AE000895) transcription elongation factor TFIIS [Methanobacterium
thermoautotrophicum]
Length = 136
Score = 40.6 bits (93), Expect = 0.028
Identities = 32/112 (28%), Positives = 46/112 (40%), Gaps = 8/112 (7%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC CG ++ ++G +C+C G E D L+ K + S +
Sbjct: 35 FCPKCGAVMFPSEGK----FKCQC-GYEK---------------DITDKLKDKYRVSEEV 74
Query: 805 VEKHNL-------QTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
K + T T CPKCG E + Q R ADE T + C C ++W E
Sbjct: 75 EAKETIIFTGDDVNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWRE 134
>sp|P49373|TFS2_SCHPO TRANSCRIPTION ELONGATION FACTOR S-II (TFIIS)
pir||S63845 transcription elongation factor TFIIS - fission yeast
(Schizosaccharomyces pombe)
gb|AAA74048.1| (U20526) transcription elongation factor TFIIS [Schizosaccharomyces
pombe]
Length = 293
Score = 39.9 bits (91), Expect = 0.047
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 763 TCPKCGREEVKYTTVQLRSADEGSTVIYSCE-CGNSW 656
TC KC +++V Y +Q RSADE T C CGN W
Sbjct: 254 TCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290
>ref|NP_042831.1| transcription factor SII homolog
sp|P27948|TFS2_ASFB7 TRANSCRIPTION FACTOR S-II-RELATED PROTEIN
pir||WMXFB2 I243L protein - African swine fever virus (strain BA71V)
gb|AAA42700.1| (M77121) transcription factor [African swine fever virus]
gb|AAA65367.1| (U18466) transcription factor SII homolog [African swine fever
virus]
prf||2113434EY transcription factor SII-like protein [African swine fever virus]
Length = 243
Score = 39.5 bits (90), Expect = 0.062
Identities = 30/97 (30%), Positives = 48/97 (48%), Gaps = 11/97 (11%)
Frame = -1
Query: 946 GTQRNVLRCECCGAENRDTGS--KVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTES- 776
GT +++ CE + +D + K+ + KP S +L S EK + S
Sbjct: 134 GTINHIINCEKKSHQQQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTEITLRSQ 193
Query: 775 --TAHET-----CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
A +T CP C + Y VQ R+ DE ST+ +C +CG+ +
Sbjct: 194 QKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>emb|CAB76962.1| (AJ133610) alpha-gliadin [Triticum aestivum]
Length = 277
Score = 38.7 bits (88), Expect = 0.11
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = -1
Query: 601 QQLLRTRESKHTQRPHPSRIRQYPAQQYNSLEQPFPCRAGTSLGYLQRHPFRPSFQVPRP 422
QQ L ++S Q+P+P + +P+QQ QPFP L YLQ PFRP P+P
Sbjct: 29 QQFLGQQQSFPPQQPYPQP-QPFPSQQPYLQLQPFP---QPQLPYLQPQPFRPQQPYPQP 84
>emb|CAA50848.1| (X71982) transcription factor SII [African swine fever virus]
Length = 243
Score = 38.7 bits (88), Expect = 0.11
Identities = 29/97 (29%), Positives = 47/97 (47%), Gaps = 11/97 (11%)
Frame = -1
Query: 946 GTQRNVLRCECCGAENRDTGS--KVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTES- 776
GT +++ CE + +D + K+ + KP +L S EK + S
Sbjct: 134 GTINHIINCEKKSHQQQDNDALNKLISGELKPEQLVGMTFAELCPSAALKEKTEITLRSQ 193
Query: 775 --TAHET-----CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
A +T CP C + Y VQ R+ DE ST+ +C +CG+ +
Sbjct: 194 QKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>dbj|BAB05437.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 380
Score = 37.5 bits (85), Expect = 0.24
Identities = 28/84 (33%), Positives = 40/84 (47%)
Frame = +1
Query: 283 KGLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGV 462
K L D S R + PA+IPA+ EAL + N+ +VR AA L +G++ +
Sbjct: 274 KALKDPSVTVRRTAGDCMSDIGDPAAIPAMIEALKDKNK--LVRWRAAMFLYEVGDETAI 331
Query: 463 EDTLRKFLHDKEKVVRESCIVALD 534
D LR D E V +AL+
Sbjct: 332 -DALRLAEDDPEFEVAMQVKMALE 354
>emb|CAB64589.1| (AL135958) transcription factor IIS (TFIIS) homologue, or RNA
polymerase III subunit? [Leishmania major]
Length = 151
Score = 37.1 bits (84), Expect = 0.31
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 808 SVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNEN 647
S E + T +E P C + + +Q+RSADE +TV + C ECG+ W ++
Sbjct: 98 SAEGGQITTIPCQNEDNP-CQSTKAYFIQIQMRSADEPATVFFKCVECGHQWRQD 151
>sp|P04724|GDA4_WHEAT ALPHA/BETA-GLIADIN A-IV PRECURSOR (PROLAMIN)
pir||T06500 alpha/beta-gliadin A-IV precursor - wheat
gb|AAA34282.1| (M11075) pre-alpha-/beta-gliadin A-IV [Triticum aestivum]
Length = 297
Score = 36.7 bits (83), Expect = 0.41
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = -1
Query: 565 QRPHPSRIRQYPAQQYNSLEQPFPCRAGTSLGYLQRHPF-RPSFQVPRP----PRDEPCW 401
Q+ P + + +P QQ +QPFP + Y+Q PF +P P+P P+ +P
Sbjct: 47 QQQFPGQQQPFPPQQPYPQQQPFP----SQQPYMQLQPFPQPQLPYPQPQLPYPQPQPFR 102
Query: 400 PRWCCSMPQ*GREWTQDAIAGRKQKQSR 317
P+ PQ Q I+ ++Q+Q +
Sbjct: 103 PQQSYPQPQPQYSQPQQPISQQQQQQQQ 130
>sp|P36958|RPB9_DROME DNA-DIRECTED RNA POLYMERASE II 15.1 KDA POLYPEPTIDE
pir||A42119 DNA-directed RNA polymerase (EC 2.7.7.6) II 15K chain - fruit fly
(Drosophila melanogaster)
gb|AAB21674.1| (S88139) RNA polymerase II 15-kda subunit [Drosophila melanogaster,
Peptide, 129 aa]
Length = 129
Score = 36.7 bits (83), Expect = 0.41
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVL--RCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSV 812
FC +C N+L + + +L C C + + + + V + +L V
Sbjct: 20 FCQECNNMLYPKEDKENKILLYACRNCDYKQKTNSNCIYVNKIMHEI------DELTHIV 73
Query: 811 QSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 650
V + H CPKC E + Q R A+E + Y C C + W E
Sbjct: 74 PDVISDPTLPRTEDH-ACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>pir||E69096 phycocyanin alpha phycocyanobilin lyase CpcE related protein -
Methanobacterium thermoautotrophicum (strain Delta H)
gb|AAB86187.1| (AE000928) phycocyanin alpha phycocyanobilin lyase CpcE related
protein [Methanobacterium thermoautotrophicum]
Length = 449
Score = 36.7 bits (83), Expect = 0.41
Identities = 28/87 (32%), Positives = 41/87 (46%), Gaps = 2/87 (2%)
Frame = +1
Query: 289 LSDSSALFRHEIAFVFGQLSHPASIPALTEALSNT--NEASMVRHEAAEALGSLGEKDGV 462
LSD R + G++ ++P L L+ +E VR + AEALG +G+ +
Sbjct: 217 LSDPQWQTRAMVVEALGEIGSRRAVPRLKGMLAGRRRDENRYVRGKVAEALGRIGDPAAL 276
Query: 463 EDTLRKFLHDKEKVVRESCIVALDIAEYE 549
ED L L D VR A+DI + E
Sbjct: 277 ED-LHMALRDPYLFVRRKAREAIDIIDVE 304
>gb|AAC67362.1| (AC005499) putative elongation factor [Arabidopsis thaliana]
Length = 378
Score = 36.4 bits (82), Expect = 0.54
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 778 STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
ST C +CG+ + Y +Q RSADE T +C C N W
Sbjct: 334 STDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHW 375
>gb|AAA96524.1| (U51306) alpha-gliadin storage protein [Triticum aestivum]
Length = 289
Score = 36.4 bits (82), Expect = 0.54
Identities = 22/60 (36%), Positives = 32/60 (52%)
Frame = -1
Query: 601 QQLLRTRESKHTQRPHPSRIRQYPAQQYNSLEQPFPCRAGTSLGYLQRHPFRPSFQVPRP 422
QQ L ++ Q+P+P +++ +P+QQ QPFP L Y Q PFRP P+P
Sbjct: 48 QQFLGQQQPFPPQQPYP-QLQPFPSQQPYLQLQPFP---QPQLPYSQPQPFRPQQPYPQP 103
>ref|NP_003421.1| zinc finger protein 91 (HPF7, HTF10)
sp|Q05481|ZN91_HUMAN ZINC FINGER PROTEIN 91 (ZINC FINGER PROTEIN HTF10) (HPF7)
pir||S35305 zinc finger protein ZNF91 - human
gb|AAA59469.1| (L11672) zinc finger protein [Homo sapiens]
Length = 1191
Score = 36.4 bits (82), Expect = 0.54
Identities = 27/104 (25%), Positives = 47/104 (44%), Gaps = 5/104 (4%)
Frame = -1
Query: 925 RCECCGAENRDTGS----KVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHETC 758
+CE CG R + + K+ T KP F + QS ++ KH + C
Sbjct: 491 KCEECGKAFRQSSTLTKHKIIHTGEKPYKFEECGKAFRQSL--TLNKHKIIHSREKPYKC 548
Query: 757 PKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNENN*T*YSTMRTH 614
+CG+ +++T+ +Y C ECG ++N + S++ TH
Sbjct: 549 KECGKAFKQFSTLTTHKIIHAGKKLYKCEECGKAFNHS-----SSLSTH 592
>emb|CAB76958.1| (AJ133606) alpha-gliadin [Triticum aestivum]
Length = 276
Score = 36.0 bits (81), Expect = 0.70
Identities = 28/96 (29%), Positives = 46/96 (47%)
Frame = -1
Query: 601 QQLLRTRESKHTQRPHPSRIRQYPAQQYNSLEQPFPCRAGTSLGYLQRHPFRPSFQVPRP 422
QQ L ++ Q+P+P + +P+QQ QPFP L Y Q PFRP P+
Sbjct: 29 QQFLGQQQPFPPQQPYPQP-QPFPSQQPYLQLQPFP---QPQLSYSQPQPFRPQQPYPQ- 83
Query: 421 PRDEPCWPRWCCSMPQ*GREWTQDAIAGRKQKQSRD 314
P+ + P+ S Q ++ Q ++Q+Q ++
Sbjct: 84 PQPQYSQPQQPISQQQQQQQQQQQQQQQQQQQQQQE 119
>emb|CAB76960.1| (AJ133608) alpha-gliadin [Triticum aestivum]
Length = 276
Score = 36.0 bits (81), Expect = 0.70
Identities = 28/96 (29%), Positives = 46/96 (47%)
Frame = -1
Query: 601 QQLLRTRESKHTQRPHPSRIRQYPAQQYNSLEQPFPCRAGTSLGYLQRHPFRPSFQVPRP 422
QQ L ++ Q+P+P + +P+QQ QPFP L Y Q PFRP P+
Sbjct: 29 QQFLGQQQPFPPQQPYPQP-QPFPSQQPYLQLQPFP---QPQLSYSQPQPFRPQQPYPQ- 83
Query: 421 PRDEPCWPRWCCSMPQ*GREWTQDAIAGRKQKQSRD 314
P+ + P+ S Q ++ Q ++Q+Q ++
Sbjct: 84 PQPQYSQPQQPISQQQQQQQQQQQQQQQQQQQQQQE 119
>ref|NP_048472.1| contains a zinc ribbon domain; similar to Chlorella virus CVU1
TFIIS-like transcription factor, corresponds to GenBank
Accession Number D29631
pir||T17614 hypothetical protein A125L - Chlorella virus PBCV-1
gb|AAC96492.1| (U42580) contains a zinc ribbon domain; similar to Chlorella virus
CVU1 TFIIS-like transcription factor, corresponds to
GenBank Accession Number D29631 [Paramecium bursaria
Chlorella virus 1]
Length = 180
Score = 36.0 bits (81), Expect = 0.70
Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Frame = -1
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
C KC + Y +Q RSADE TV C CG+ W +
Sbjct: 143 CGKCKSRKTSYYEMQTRSADEPMTVFAKCHSCGSRWKQ 180
>pir||S47663 transcription elongation factor TFIIS homolog - Chlorella virus
CV-K2
dbj|BAA04187.1| (D17368) transcription elongation factor SII [Chlorella virus]
Length = 180
Score = 36.0 bits (81), Expect = 0.70
Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Frame = -1
Query: 760 CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 650
C KC + Y +Q RSADE TV C CG+ W +
Sbjct: 143 CGKCKSRKTSYYEMQTRSADEPMTVFAKCHSCGSRWKQ 180
>ref|NP_006224.1| polymerase (RNA) II (DNA directed) polypeptide I (14.5kD)
sp|P36954|RPB9_HUMAN DNA-DIRECTED RNA POLYMERASE II 14.5 KD POLYPEPTIDE (RPB9) (RPB14.5)
pir||S41621 DNA-directed RNA polymerase (EC 2.7.7.6) II 14.5K chain - human
emb|CAA80649.1| (Z23102) RNA Polymerase II subunit 14.5 kD [Homo sapiens]
gb|AAB51181.1| (AD001527) HUMAN DNA-DIRECTED RNA POLYMERASE II 14.5 KD SUBUNIT
[Homo sapiens]
Length = 125
Score = 36.0 bits (81), Expect = 0.70
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC +C N+L + + +L C + + + K + L Q + Q
Sbjct: 16 FCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQD 75
Query: 805 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 650
T C KCG +E + A++ + Y C CG+ W E
Sbjct: 76 PT-----LPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>pir||S39445 DNA-directed RNA polymerase (EC 2.7.7.6) II chain 9, 15K - fruit
fly (Drosophila melanogaster)
gb|AAF55045.1| (AE003704) RpII15 gene product [Drosophila melanogaster]
Length = 129
Score = 36.0 bits (81), Expect = 0.70
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Frame = -1
Query: 985 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 806
FC +C N+L + + +L C + + + K L + +
Sbjct: 20 FCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVISD 79
Query: 805 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 650
T CPKC E + Q R A+E + Y C C + W E
Sbjct: 80 PT-----LPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>pir||T42076 protein kinase homolog - Streptomyces coelicolor
dbj|BAA34340.1| (AB018799) eukaryotic-type protein kinase [Streptomyces coelicolor
A3(2)]
emb|CAC09543.1| (AL442120) eukaryotic-type protein kinase [Streptomyces coelicolor]
Length = 487
Score = 36.0 bits (81), Expect = 0.70
Identities = 43/146 (29%), Positives = 60/146 (40%), Gaps = 11/146 (7%)
Frame = +1
Query: 100 SIDPAPPMPESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXX 279
+I PA ++ V L R+ T D RA+ LR LA
Sbjct: 329 AILPAAAEQHGERSPVVRTLRRQYAATLMDDGQYRRALPELRRLADERAAEA-------- 380
Query: 280 XKGLSDSSAL-FRHEIAFVFGQLSHPASIPALTEAL----------SNTNEASMVRHEAA 426
G +D L R++ A QL PA+ A AL + + A VR
Sbjct: 381 --GQADPQCLRHRYDAAQCLEQLGEPAAALAEYRALLPYYENQYVAGDPDLAHDVRRRIG 438
Query: 427 EALGSLGEKDGVEDTLRKFLHDKEKVVRESCIVALDI 537
L +LG++ DTL + LHD E+V +A DI
Sbjct: 439 HLLLALGDRAAAHDTLARLLHDVERVHGPGHPLAADI 475
>emb|CAB76959.1| (AJ133607) alpha-gliadin [Triticum aestivum]
Length = 278
Score = 35.2 bits (79), Expect = 1.2
Identities = 24/68 (35%), Positives = 34/68 (49%), Gaps = 2/68 (2%)
Frame = -1
Query: 601 QQLLRTRESKHTQRPHPSRIRQYPAQQYNSLEQPFPCRAGTSLGYLQRHPFRPS--FQVP 428
QQ L ++ Q+P+P + +P+QQ QPFP L Y Q PFRP + P
Sbjct: 29 QQFLGQQQPFPPQQPYPQP-QPFPSQQPYLQLQPFP---QPQLSYSQPQPFRPQQLYPQP 84
Query: 427 RPPRDEPCWP 398
+P +P P
Sbjct: 85 QPQYSQPQQP 94
>emb|CAB62001.1| (AL132967) hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 34.8 bits (78), Expect = 1.6
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -2
Query: 402 GLVGVAQCLSKGGNGR-----RMR*LAENKSNLVTEQGG*IGQSLCEGEDGRSSSWQVSG 238
G GVA GG G+ + + E + +V + GG +GQ + + R + W+ +
Sbjct: 77 GSSGVAGSGLPGGEGKWPEEPKRWNIKEEEEKVVFDTGGEVGQGIETSRERRGNEWEETK 136
Query: 237 RGEISEGEHGAVTG 196
R ++ EGE V G
Sbjct: 137 RWDMKEGEEKVVFG 150
>pir||D22364 alpha/beta-gliadin precursor (clone A735) - wheat
Length = 326
Score = 34.8 bits (78), Expect = 1.6
Identities = 24/83 (28%), Positives = 40/83 (47%), Gaps = 6/83 (7%)
Frame = -1
Query: 565 QRPHPSRIRQYPAQQYNSLEQPFPCRAG--TSLGYLQRHPFRPSFQVPRP----PRDEPC 404
Q+ P + + +P QQ +QPFP + + Q PF P P+P P+ +P
Sbjct: 47 QQQFPGQQQPFPPQQPYPQQQPFPSQQPYMQLQPFPQPQPFPPQLPYPQPQLPYPQPQPF 106
Query: 403 WPRWCCSMPQ*GREWTQDAIAGRKQKQSR 317
P+ PQ Q I+ ++Q+Q +
Sbjct: 107 RPQQSYPQPQPQYSQPQQPISQQQQQQQQ 135
>emb|CAB76955.1| (AJ133603) alpha-gliadin [Triticum aestivum]
Length = 274
Score = 34.4 bits (77), Expect = 2.1
Identities = 22/60 (36%), Positives = 30/60 (49%)
Frame = -1
Query: 601 QQLLRTRESKHTQRPHPSRIRQYPAQQYNSLEQPFPCRAGTSLGYLQRHPFRPSFQVPRP 422
QQ L ++ Q+P+P + +P+QQ QPFP L Y Q PFRP P+P
Sbjct: 29 QQFLGQQQPFPPQQPYPQP-QPFPSQQPYLQLQPFP---QPQLPYSQPQPFRPQQPYPQP 84
>dbj|BAA01477.1| (D10627) zinc finger protein [Mus musculus]
Length = 346
Score = 34.4 bits (77), Expect = 2.1
Identities = 45/176 (25%), Positives = 78/176 (43%), Gaps = 38/176 (21%)
Frame = -1
Query: 982 CTDCGNLLPATKGTQRNV--------LRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQ- 830
C +CG Q + C CG S +T + P +
Sbjct: 93 CNECGKAFAQQSHLQNHKRTHTGEKPYECNECGKAFSQHSSLQNHKRTHTGEKPYECNEC 152
Query: 829 -KLQSSVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 656
K S ++ KH C +CG+ +++++Q + Y C ECG ++
Sbjct: 153 GKAFSQYSNLPKHKRTHTGEKPYECNECGKAFSQHSSLQQHKRTHTGEIPYECNECGKAF 212
Query: 655 NENN*T*YSTMRTH-------------S*IMQQLLRTRESKHT-QRPH------PSRIRQ 536
++++ + RTH + LR