Score E
Sequences producing significant alignments: (bits) Value
sp|P24919|NUFM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 29.9 KD... 144 1e-33
pir||T18241 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) - ... 59 6e-08
sp|Q18359|NUFM_CAEEL PUTATIVE NADH-UBIQUINONE OXIDOREDUCTAS... 49 6e-05
sp|P23935|NUFM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 13 KDA-... 46 4e-04
ref|NP_004991.1| NADH dehydrogenase (ubiquinone) 1 alpha su... 45 7e-04
ref|NP_037117.1| NADH ubiquinone oxidoreductase subunit B13... 42 0.008
gb|AAB19472.1| 13 kDa-B polypeptide of iron-sulfur protein ... 41 0.014
gb|AAF50138.1| (AE003547) CG6463 gene product [Drosophila m... 38 0.16
sp|O67825|IF2_AQUAE TRANSLATION INITIATION FACTOR IF-2 >gi|... 34 1.8
sp|Q09217|YP68_CAEEL HYPOTHETICAL 37.0 KDA PROTEIN B0495.8 ... 33 3.1
sp|P76555|EUTQ_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTQ ... 33 4.0
pir||S51613 cyclin homolog CLN2 - yeast (Candida albicans) 33 4.0
sp|P43062|CG12_CANAL G1/S-SPECIFIC CYCLIN CLN2 >gi|578118|e... 33 4.0
pir||T25592 hypothetical protein C32E12.4 - Caenorhabditis ... 32 6.9
ref|NP_010708.1| Type 1 membrane protein with EF hand motif... 32 9.1
sp|P41809|HKR1_YEAST HANSENULA MRAKII KILLER TOXIN-RESISTAN... 32 9.1
sp|P37814|ATPF_BACSU ATP SYNTHASE B CHAIN >gi|2118214|pir||... 32 9.1
ref|NP_011537.1| acts in concert with Mid2p to transduce ce... 32 9.1
dbj|BAB10432.1| (AB009055) gene_id:MXC20.6~unknown protein ... 32 9.1
>sp|P24919|NUFM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 29.9 KD SUBUNIT PRECURSOR (COMPLEX
I-29.9KD) (CI-29.9KD)
pir||S17191 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) 29.9K chain precursor
- Neurospora crassa
emb|CAA39694.1| (X56237) NADH dehydrogenase subunit [Neurospora crassa]
Length = 273
Score = 144 bits (359), Expect = 1e-33
Identities = 82/195 (42%), Positives = 126/195 (64%), Gaps = 29/195 (14%)
Frame = -3
Query: 714 TLNRLQKVPENSMYRQSVEAVTKHRMSLVEQMVPPGYNEWAARAKELVSKNSSQFRVSSG 535
TL++L+++PE+S+YRQS EA+TKHR+++VEQ VP GY+ W RA++L+ K+ S +++
Sbjct: 50 TLDKLKQIPEHSLYRQSAEALTKHRLAIVEQYVPDGYDAWQERARKLLEKHKSD--LTAR 107
Query: 534 RIDGSEAHTVKLGD-KVFVVGRKHEASD-----------------VRIXXXXXXXXXXXX 409
+ DG A V+ D + + + + D V+
Sbjct: 108 QFDGQHARLVEGPDGRAYFIRQMVPPQDWRDVEWDGAVLDPHFSWVQTGEDVVGAVKLED 167
Query: 408 XXGIRTLKEREDQATWAERKPL-----------EDHEKVEWEDEPQMTAEQVHELEQKIG 262
+ L + + A R+ L ED VEWE EP ++AEQ+ E+E +IG
Sbjct: 168 SDKLLELDKIRESDPVAYRQGLRDLGIKMGGVVEDKSPVEWESEPPLSAEQIAEMEARIG 227
Query: 261 AGLIEEIIQVAEGELKLVETMEKTKVWEDLDEKPVPGQWTYFDR 130
+GLIEE++QVAEGELKLV+ M + + WE L+E+ GQWTYF+R
Sbjct: 228 SGLIEEVVQVAEGELKLVDIMTQARPWEALEEEAPEGQWTYFER 271
>pir||T18241 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) - yeast (Candida
albicans)
emb|CAA22012.1| (AL033503) nadh-ubiquinone oxidoreductase [Candida albicans]
Length = 139
Score = 58.9 bits (140), Expect = 6e-08
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = -3
Query: 294 EQVHELEQKIGAGLIEEIIQVAEGELKLVETMEKTKVWEDLDEKPVPGQWTYFDR 130
E V +E +IG GLIEEI+ A EL L + KVWE+L+EKP+ QW YF +
Sbjct: 83 EIVENIENQIGGGLIEEIVIQAADELSLASQLGGLKVWEELEEKPLDDQWVYFGK 137
>sp|Q18359|NUFM_CAEEL PUTATIVE NADH-UBIQUINONE OXIDOREDUCTASE 17.3 KD SUBUNIT (COMPLEX
I-17.3KD) (CI-17.3KD)
pir||T19659 hypothetical protein C33A12.1 - Caenorhabditis elegans
emb|CAA92789.1| (Z68493) Similarity to Bovine NADH-ubiquinone oxidoreductase 13
KD-B subunit (SW:NUFM_BOVIN)~cDNA EST yk138g3.5 comes
from this gene~cDNA EST yk659a12.5 comes from this gene
[Caenorhabditis elegans]
Length = 150
Score = 48.8 bits (114), Expect = 6e-05
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = -3
Query: 288 VHELEQKIGAGLIEEIIQVAEGELKLVETMEKTKVWEDLDEKPVPGQWTY 139
+ +LE+KIG G IEE+I+ AE EL+ + +K WE L E GQW++
Sbjct: 99 IKKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAWEPLVESAPKGQWSW 148
Score = 32.5 bits (72), Expect = 5.3
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3
Query: 720 GTTLNRLQKVPENSMYRQSVEAVTKHRMSLVE 625
G L L+++P ++ YR+ EAV K R++LV+
Sbjct: 63 GRILRALEQIPRDAAYRKYTEAVVKQRLALVQ 94
>sp|P23935|NUFM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 13 KDA-B SUBUNIT (COMPLEX I-13KD-B)
(CI-13KD-B) (COMPLEX I SUBUNIT B13)
pir||S28244 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) complex I 13K-B chain
- bovine
emb|CAA44903.1| (X63218) NADH dehydrogenase [Bos taurus]
Length = 116
Score = 46.1 bits (107), Expect = 4e-04
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -3
Query: 333 EKVEWEDEPQMTAE-QVHELEQKIGAGLIEEIIQVAEGELKLVETMEKTKVWEDLDEKPV 157
E++ E + AE V +LE+++ G IEE+I AE EL L M + K WE L E+P
Sbjct: 49 EQITNEKLSMVKAEPDVKKLEERLQGGQIEEVILQAENELSLARKMIQWKPWEPLVEEPP 108
Query: 156 PGQWTY 139
QW +
Sbjct: 109 ASQWKW 114
>ref|NP_004991.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 (13kD, B13)
sp|Q16718|NUFM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 13 KDA-B SUBUNIT (COMPLEX I-13KD-B)
(CI-13KD-B) (COMPLEX I SUBUNIT B13)
pir||G02526 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) complex I 13K-B chain
- human
gb|AAB02224.1| (U53468) NADH:ubiquinone oxidoreductase subunit B13 [Homo sapiens]
gb|AAB37259.1| (U64028) NADPH:ubiquinone oxidoreductase subunit B13 [Homo sapiens]
gb|AAD21526.1| (AF044418) NADH-ubiquinone oxidoreductase 13 kDa subunit [Homo
sapiens]
Length = 116
Score = 45.3 bits (105), Expect = 7e-04
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -3
Query: 333 EKVEWEDEPQMTAE-QVHELEQKIGAGLIEEIIQVAEGELKLVETMEKTKVWEDLDEKPV 157
E++ E + AE V +LE ++ G +EE+I AE EL L M + K+WE L E+P
Sbjct: 49 EQITNEKLAMVKAEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPP 108
Query: 156 PGQWTY 139
QW +
Sbjct: 109 ADQWKW 114
>ref|NP_037117.1| NADH ubiquinone oxidoreductase subunit B13
sp|Q63362|NUFM_RAT NADH-UBIQUINONE OXIDOREDUCTASE 13 KDA-B SUBUNIT (COMPLEX I-13KD-B)
(CI-13KD-B) (COMPLEX I SUBUNIT B13)
dbj|BAA13045.1| (D86215) NADH:ubiquinone oxidoreductase [Rattus norvegicus]
Length = 116
Score = 41.8 bits (96), Expect = 0.008
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = -3
Query: 288 VHELEQKIGAGLIEEIIQVAEGELKLVETMEKTKVWEDLDEKPVPGQWTY 139
V +LE + G +EE+I AE EL L M + K WE L E+P QW +
Sbjct: 65 VKKLENLLQGGEVEEVILQAEKELSLARKMLQWKPWEPLVEEPPANQWKW 114
>gb|AAB19472.1| 13 kDa-B polypeptide of iron-sulfur protein fraction of
NADH:ubiquinone oxidoreductase [cattle, heart, Peptide
Mitochondrial Partial, 114 aa]
Length = 114
Score = 41.0 bits (94), Expect = 0.014
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -3
Query: 333 EKVEWEDEPQMTAE-QVHELEQKIGAGLIEEIIQVAEGELKLVETMEKTKVWEDLDEKPV 157
E++ E + AE V +LE+++ G IEE+I AE EL L M + K WE L E+P
Sbjct: 48 EQITNEKLSMVKAEPDVKKLEERLQGGQIEEVILQAENELSLARKMIQWKPWEPLVEEPW 107
Query: 156 PGQ 148
Q
Sbjct: 108 ASQ 110
>gb|AAF50138.1| (AE003547) CG6463 gene product [Drosophila melanogaster]
Length = 229
Score = 37.5 bits (85), Expect = 0.16
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 294 EQVHELEQKIGAGLIEEIIQVAEGELKLVETMEKTKVWEDLDEKPVPGQWTY 139
+ + LE+ +G G +EE+I AE EL L M K WE L + QW +
Sbjct: 63 KDITALEKAVGCGQVEELIVQAENELILARKMLGWKPWEKLVQAAPAKQWDW 114
>sp|O67825|IF2_AQUAE TRANSLATION INITIATION FACTOR IF-2
pir||E70474 translation initiation factor IF-2 - Aquifex aeolicus
gb|AAC07794.1| (AE000769) initiation factor IF-2 [Aquifex aeolicus]
Length = 805
Score = 34.0 bits (76), Expect = 1.8
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = -3
Query: 399 IRTLKEREDQATWAERKPLEDHEKVEWEDEPQMTAEQVHELEQKIGAGLIEEIIQVAEGE 220
I+ +E+E+ T + P E EK E E + ++ E+V +E+K ++EEI + E E
Sbjct: 59 IKEEEEKEEVVTEQAQAPAEVEEKKEEEKKEEVIVEEV--VEEKKPEVIVEEIEEKKEEE 116
Query: 219 LKLVETMEKTKVWEDLDE 166
K E K V E + E
Sbjct: 117 EKKEEEKPKKSVEELIKE 134
>sp|Q09217|YP68_CAEEL HYPOTHETICAL 37.0 KDA PROTEIN B0495.8 IN CHROMOSOME II
gb|AAA62527.1| (U21317) B0495.8 gene product [Caenorhabditis elegans]
Length = 313
Score = 33.2 bits (74), Expect = 3.1
Identities = 22/64 (34%), Positives = 34/64 (52%)
Frame = -3
Query: 354 RKPLEDHEKVEWEDEPQMTAEQVHELEQKIGAGLIEEIIQVAEGELKLVETMEKTKVWED 175
R+ LED K + A+QV E+E+KI + + I+ E K+ E+M+ K E+
Sbjct: 104 REKLEDDVKTQTSQAADSKAKQVAEIEEKIAKNV--DDIEKLGNEGKIEESMKLHKYVEE 161
Query: 174 LDEK 163
L EK
Sbjct: 162 LREK 165
>sp|P76555|EUTQ_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTQ
pir||C65021 hypothetical protein b2460 - Escherichia coli (strain K-12)
gb|AAC75513.1| (AE000332) orf, hypothetical protein [Escherichia coli]
Length = 233
Score = 32.8 bits (73), Expect = 4.0
Identities = 22/65 (33%), Positives = 30/65 (45%)
Frame = -3
Query: 681 SMYRQSVEAVTKHRMSLVEQMVPPGYNEWAARAKELVSKNSSQFRVSSGRIDGSEAHTVK 502
S+ Q +E V K + SL + + P + + V SS V GR DG+E H V
Sbjct: 88 SLVAQLMEKVMKEKQSLEQGAMQPSFKSVTGKGGIKVIDGSS---VKFGRFDGAEPHCVG 144
Query: 501 LGDKV 487
L D V
Sbjct: 145 LTDLV 149
>pir||S51613 cyclin homolog CLN2 - yeast (Candida albicans)
Length = 465
Score = 32.8 bits (73), Expect = 4.0
Identities = 22/72 (30%), Positives = 39/72 (53%), Gaps = 1/72 (1%)
Frame = -3
Query: 714 TLNRLQKVPENSMYRQSVEAVTKHRMSLVEQMV-PPGYNEWAARAKELVSKNSSQFRVSS 538
TLN L+K+ +S Y++ + KH + +E +V P ++ + L+ NSS F V++
Sbjct: 139 TLNDLRKICVDSYYKELFVEMEKHILKSLEWVVNAPTFDAFIDLYSNLLISNSSNFEVAN 198
Query: 537 GRIDGSEAHTVKL 499
I +H +KL
Sbjct: 199 --IIKKSSHKIKL 209
>sp|P43062|CG12_CANAL G1/S-SPECIFIC CYCLIN CLN2
emb|CAA56337.1| (X80033) G1 cyclin [Candida albicans]
Length = 465
Score = 32.8 bits (73), Expect = 4.0
Identities = 22/72 (30%), Positives = 39/72 (53%), Gaps = 1/72 (1%)
Frame = -3
Query: 714 TLNRLQKVPENSMYRQSVEAVTKHRMSLVEQMV-PPGYNEWAARAKELVSKNSSQFRVSS 538
TLN L+K+ +S Y++ + KH + +E +V P ++ + L+ NSS F V++
Sbjct: 139 TLNDLRKICVDSYYKELFVEMEKHILKSLEWVVNAPTFDAFIDLYSNLLISNSSNFEVAN 198
Query: 537 GRIDGSEAHTVKL 499
I +H +KL
Sbjct: 199 --IIKKSSHKIKL 209
>pir||T25592 hypothetical protein C32E12.4 - Caenorhabditis elegans
gb|AAB53880.1| (U80032) weak similarity to human NuMA protein (PIR:A42184) and S.
cerevisiae glucoamylase S1/S2 precursor (SP:P08640)
[Caenorhabditis elegans]
Length = 1624
Score = 32.1 bits (71), Expect = 6.9
Identities = 20/68 (29%), Positives = 34/68 (49%)
Frame = -3
Query: 384 EREDQATWAERKPLEDHEKVEWEDEPQMTAEQVHELEQKIGAGLIEEIIQVAEGELKLVE 205
E ED+ W E ED E+ E+EDE ++ E E E+ I +E E ++++E
Sbjct: 875 EYEDEEYWDEEIEYEDEEEYEYEDE-EVLEEYGDEEEEDIDMKSVESSDVEEESVMEVLE 933
Query: 204 TMEKTKVW 181
E +++
Sbjct: 934 PSESHELF 941
>ref|NP_010708.1| Type 1 membrane protein with EF hand motif; Hkr1p
pir||S69703 HKR1 protein precursor - yeast (Saccharomyces cerevisiae)
gb|AAB64857.1| (U33007) Hkr1p; YDR420W; CAI: 0.10 [Saccharomyces cerevisiae]
Length = 1802
Score = 31.7 bits (70), Expect = 9.1
Identities = 31/71 (43%), Positives = 40/71 (55%), Gaps = 15/71 (21%)
Frame = +2
Query: 83 SSTFTIAPFVSCFV*VRSK*VHWPGTGFSSRSSQTLVFS-----------IVSTSLSSPS 229
SS F +APF S ++ S V T SS S+ +V S + ST SSPS
Sbjct: 436 SSHFGVAPFPSAYISFSSVPVAVSSTYTSSPSASVVVPSAYASSPSVPVAVSSTYTSSPS 495
Query: 230 ATWIISSI----RPAPIFCSSSWTCS 295
A ISS AP+ SS++T S
Sbjct: 496 APAAISSTYTSSPSAPVAVSSTYTSS 521
>sp|P41809|HKR1_YEAST HANSENULA MRAKII KILLER TOXIN-RESISTANT PROTEIN 1 PRECURSOR
gb|AAB30051.1| (S69101) Hkr1p [Saccharomyces cerevisiae, YNN295, Peptide, 1802 aa]
Length = 1802
Score = 31.7 bits (70), Expect = 9.1
Identities = 31/71 (43%), Positives = 40/71 (55%), Gaps = 15/71 (21%)
Frame = +2
Query: 83 SSTFTIAPFVSCFV*VRSK*VHWPGTGFSSRSSQTLVFS-----------IVSTSLSSPS 229
SS F +APF S ++ S V T SS S+ +V S + ST SSPS
Sbjct: 436 SSHFGVAPFPSAYISFSSVPVAVSSTYTSSPSASVVVPSAYASSPSVPVAVSSTYTSSPS 495
Query: 230 ATWIISSI----RPAPIFCSSSWTCS 295
A ISS AP+ SS++T S
Sbjct: 496 APAAISSTYTSSPSAPVAVSSTYTSS 521
>sp|P37814|ATPF_BACSU ATP SYNTHASE B CHAIN
pir||I40364 H+-transporting ATP synthase (EC 3.6.1.34) chain b (atpF) -
Bacillus subtilis
emb|CAA82256.1| (Z28592) ATP synthase subunit b [Bacillus subtilis]
emb|CAB15702.1| (Z99122) ATP synthase (subunit b) [Bacillus subtilis]
Length = 170
Score = 31.7 bits (70), Expect = 9.1
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Frame = -3
Query: 399 IRTLKERED----QATWAERKPLEDHEKVEWE----DEPQMTAEQVHELEQKIGAGLIEE 244
+ +K+RED + T AE K E + +E + E + ++ + E +K+G EE
Sbjct: 40 LNIMKQREDHIAGEITSAEEKNKEAQQLIEEQRVLLKEARQESQTLIENAKKLGEKQKEE 99
Query: 243 IIQVAEGELKLVETMEKTKVWEDLDE 166
IIQ A E + ++ +T++ ++ ++
Sbjct: 100 IIQAARAESERLKEAARTEIVKEKEQ 125
>ref|NP_011537.1| acts in concert with Mid2p to transduce cell wall stress signals;
Mtl1p
sp|P53214|YG1F_YEAST HYPOTHETICAL 57.5 KD PROTEIN IN VMA7-RPS25A INTERGENIC REGION
pir||S64314 probable membrane protein YGR023w - yeast (Saccharomyces
cerevisiae)
emb|CAA97006.1| (Z72807) ORF YGR023w [Saccharomyces cerevisiae]
Length = 551
Score = 31.7 bits (70), Expect = 9.1
Identities = 38/155 (24%), Positives = 62/155 (39%), Gaps = 4/155 (2%)
Frame = +2
Query: 164 FSSRSSQTLVFSIVSTSLSSPSATWIISSIRPAPIFCSSSWTCSAVI*GXXXXXXXXXXX 343
FSS SS +L+ S +STS+S+ S+ ++ SS +P SS T S+
Sbjct: 181 FSSESSSSLISSSISTSVST-SSVYVPSSSTSSPPSSSSELTSSS--------YSSSSSS 231
Query: 344 RGLRSAQVAWSSRSLSVRIXXXXXXXXXXXXXXXIRTSLASCFRPTTKTLSPSLTV*ASL 523
L S ++SS S S S +S + + PS + +S
Sbjct: 232 STLFSYSSSFSSSSSSSSSSSSSSSSSSSSSSSYFTLSTSSSSSIYSSSSYPSFSSSSSS 291
Query: 524 PSMRPLETRNCDEFLLT----SSLARAAHSLYPGGTICS 628
+ + + + S+LA+ S+ G TI S
Sbjct: 292 NPTSSITSTSASSSITPASEYSNLAKTITSIIEGQTILS 330
>dbj|BAB10432.1| (AB009055) gene_id:MXC20.6~unknown protein [Arabidopsis thaliana]
Length = 169
Score = 31.7 bits (70), Expect = 9.1
Identities = 12/31 (38%), Positives = 23/31 (73%)
Frame = -3
Query: 714 TLNRLQKVPENSMYRQSVEAVTKHRMSLVEQ 622
TL +Q VPE+ YR++VE+ T+ R+++ ++
Sbjct: 40 TLKEIQAVPEDEGYRKAVESFTRQRLNVCKE 70
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210650438
Number of Sequences: 565281
Number of extensions: 4020444
Number of successful extensions: 16401
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 16368
Number of HSP's gapped (non-prelim): 46
length of query: 245
length of database: 177,575,912
effective HSP length: 54
effective length of query: 191
effective length of database: 147,050,738
effective search space: 28086690958
effective search space used: 28086690958
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)