Score E
Sequences producing significant alignments: (bits) Value
ref|NP_063864.1| B5R; putative >gi|137490|sp|P21115|VB05_VA... 39 0.078
gb|AAB96547.1| (U94848) EEV gp42,ps/hr protein [Vaccinia vi... 39 0.078
pir||T28605 hypothetical protein B6R - variola major virus ... 38 0.13
ref|NP_038121.1| TB5R >gi|6969862|gb|AAF34074.1| (AF095689)... 38 0.13
ref|NP_042219.1| B7R >gi|9633371|ref|NP_050475.1|| H7R prot... 38 0.13
sp|P24083|VB05_VACCL PLAQUE-SIZE/HOST RANGE PROTEIN PRECURS... 37 0.30
sp|Q01227|VB05_VACCV PLAQUE-SIZE/HOST RANGE PROTEIN PRECURS... 37 0.30
sp|P24084|VB05_VACC0 PLAQUE-SIZE/HOST RANGE PROTEIN PRECURS... 37 0.30
gb|AAC99560.1| (AF012825) envelope glycoprotein C1R [Ectrom... 37 0.30
emb|CAA96577.1| (Z72496) mucin MUC5B [Homo sapiens] 36 0.51
pir||T16509 hypothetical protein F59A6.3 - Caenorhabditis e... 36 0.51
pir||T22808 hypothetical protein F56H9.1 - Caenorhabditis e... 36 0.67
emb|CAB06616.1| (Z84818) GP80 [Bovine herpesvirus 4] 35 1.2
gb|AAG13365.1| (AF268172) polyprotein [bovine viral diarrhe... 35 1.5
pir||S24169 mucin - rat 34 2.0
pir||JW0067 chitinase (EC 3.2.1.14) A - Emericella nidulans 34 2.6
gb|AAB86941.1| (AF030944) microfilarial sheath protein SHP3... 33 4.5
emb|CAA75280.1| (Y15035) B4R [Cowpox virus] 33 4.5
gb|AAA88880.1| (U21329) NS3 polyprotein [Hog cholera virus] 32 7.6
gb|AAA88879.1| (U21328) NS3 polyprotein [Hog cholera virus] 32 7.6
pir||S55315 mucin (clone PGM-2A) - pig >gi|2136504|pir||I47... 32 7.6
pir||S58295 polyprotein - hog cholera virus 32 7.6
gb|AAB50409.1| (U90951) polyprotein [pestivirus type 2] 32 7.6
dbj|BAA08476.1| (D49532) hog cholera virus polyprotein [pes... 32 7.6
emb|CAA65386.1| (X96550) complete genome [Hog cholera virus] 32 7.6
gb|AAA86909.1| (U45478) polyprotein [Hog cholera virus] 32 7.6
gb|AAC68902.2| (AF092448) polyprotein [Hog cholera virus] 32 7.6
gb|AAA86908.1| (U45477) polyprotein [Hog cholera virus] 32 7.6
sp|P19712|POLG_HCVA GENOME POLYPROTEIN >gi|74503|pir||GNWVH... 32 7.6
dbj|BAA08477.1| (D49533) hog cholera virus polyprotein [pes... 32 7.6
gb|AAA43844.2| (J04358) polyprotein [Hog cholera virus] 32 7.6
emb|CAA86367.1| (Z46258) polyprotein [Hog cholera virus] 32 7.6
pir||S57437 genome polyprotein - hog cholera virus >gi|8712... 32 7.6
ref|NP_056778.1| hog cholera virus protein precursor >gi|13... 32 7.6
gb|AAC62087.1| (AF091661) polyprotein [Hog cholera virus] 32 7.6
prf||2119294A YFW1 gene [Saccharomyces cerevisiae] 32 7.6
ref|NP_011835.1| Putative integral membrane protein contain... 32 7.6
gb|AAB71465.1| (AC000098) EST gb|ATTS1136 comes from this g... 32 7.6
gb|AAC98302.2| (AF099102) polyprotein [Hog cholera virus] 32 7.6
>ref|NP_063864.1| B5R; putative
sp|P21115|VB05_VACCC PLAQUE-SIZE/HOST RANGE PROTEIN PRECURSOR (PROTEIN B5)
pir||D42526 B5R protein - vaccinia virus (strain Copenhagen)
gb|AAA48201.1| (M35027) B5R; putative [Vaccinia virus]
Length = 317
Score = 39.1 bits (89), Expect = 0.078
Identities = 21/67 (31%), Positives = 33/67 (48%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F+ GS +C +DG V+P CV T+E
Sbjct: 188 IPSLSNGLISGSTFSIGGVIHLSCKSGFILTGSPSSTC--IDGKWNPVLPICVRTNEEFD 245
Query: 713 PVEEISD 693
PV++ D
Sbjct: 246 PVDDGPD 252
>gb|AAB96547.1| (U94848) EEV gp42,ps/hr protein [Vaccinia virus]
Length = 317
Score = 39.1 bits (89), Expect = 0.078
Identities = 19/67 (28%), Positives = 35/67 (51%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F+ GS +C +DG ++P+CV ++E+
Sbjct: 188 IPSLSNGLISGSTFSIGGVIHLSCKSGFILTGSPSSTC--IDGKWNPILPTCVRSNEKFD 245
Query: 713 PVEEISD 693
PV++ D
Sbjct: 246 PVDDGPD 252
>pir||T28605 hypothetical protein B6R - variola major virus
gb|AAA60915.1| (L22579) homolog of vaccinia virus CDS B5R (envelope glycoprotein);
putative [Variola major virus]
Length = 317
Score = 38.3 bits (87), Expect = 0.13
Identities = 20/67 (29%), Positives = 33/67 (48%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F+ GS +C +DG V+P C+ ++E
Sbjct: 188 IPSLSNGLISGSTFSIGGVIHLSCKSGFILTGSPSSTC--IDGKWNPVLPICIRSNEEFD 245
Query: 713 PVEEISD 693
PVE+ D
Sbjct: 246 PVEDGPD 252
>ref|NP_038121.1| TB5R
gb|AAF34074.1| (AF095689) TB5R [Vaccinia virus (strain Tian Tan)]
Length = 317
Score = 38.3 bits (87), Expect = 0.13
Identities = 21/67 (31%), Positives = 33/67 (48%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F+ GS +C +DG V+P CV T+E
Sbjct: 188 MPSLSNGLISGSTFSIGGVIHLSCKSGFILTGSPSSTC--IDGKWNPVLPICVRTNEEFD 245
Query: 713 PVEEISD 693
PV++ D
Sbjct: 246 PVDDGPD 252
>ref|NP_042219.1| B7R
ref|NP_050475.1| H7R protein
pir||G36855 B7R protein - variola virus (strain India-1967)
pir||F72172 H7R protein - variola minor virus (strain Garcia-1966)
emb|CAA49116.1| (X69198) B7R [Variola virus]
emb|CAA46496.1| (X65519) B5R protein [Variola virus]
gb|AAA69385.1| (U18339) H7R [Variola virus]
gb|AAA69448.1| (U18341) B6R [Variola virus]
emb|CAA50956.1| (X72086) ORF5R; B7R in citation [3] [Variola virus]
emb|CAB54776.1| (Y16780) H7R protein [variola minor virus]
prf||2015436GX B7R gene [Variola major virus]
Length = 317
Score = 38.3 bits (87), Expect = 0.13
Identities = 20/67 (29%), Positives = 33/67 (48%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F+ GS +C +DG V+P C+ ++E
Sbjct: 188 IPSLSNGLISGSTFSIGGVIHLSCKSGFILTGSPSSTC--IDGKWNPVLPICIRSNEEFD 245
Query: 713 PVEEISD 693
PVE+ D
Sbjct: 246 PVEDGPD 252
>sp|P24083|VB05_VACCL PLAQUE-SIZE/HOST RANGE PROTEIN PRECURSOR (PROTEIN B5)
pir||A38493 ps/hr protein - vaccinia virus (strain Lister)
gb|AAA48315.1| (M55433) ps/hr [Vaccinia virus]
Length = 317
Score = 37.1 bits (84), Expect = 0.30
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F GS +C +DG ++P+CV ++E+
Sbjct: 188 MPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTC--IDGKWNPILPTCVRSNEKFD 245
Query: 713 PVEEISD 693
PV++ D
Sbjct: 246 PVDDGPD 252
>sp|Q01227|VB05_VACCV PLAQUE-SIZE/HOST RANGE PROTEIN PRECURSOR (PROTEIN B5)
pir||JQ1799 B5R protein precursor - vaccinia virus (strain WR)
dbj|BAA01835.1| (D11079) 35.1K protein [Vaccinia virus]
Length = 317
Score = 37.1 bits (84), Expect = 0.30
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F GS +C +DG V+P CV T+E
Sbjct: 188 MPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTC--IDGKWNPVLPICVRTNEEFD 245
Query: 713 PVEEISD 693
PV++ D
Sbjct: 246 PVDDGPD 252
>sp|P24084|VB05_VACC0 PLAQUE-SIZE/HOST RANGE PROTEIN PRECURSOR (PROTEIN B5)
gb|AAA48316.1| (M55434) ps/hr [Vaccinia virus]
Length = 317
Score = 37.1 bits (84), Expect = 0.30
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F GS +C +DG ++P+CV ++E+
Sbjct: 188 MPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTC--IDGKWNPILPTCVRSNEKFD 245
Query: 713 PVEEISD 693
PV++ D
Sbjct: 246 PVDDGPD 252
>gb|AAC99560.1| (AF012825) envelope glycoprotein C1R [Ectromelia virus]
Length = 317
Score = 37.1 bits (84), Expect = 0.30
Identities = 18/67 (26%), Positives = 33/67 (48%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F GS +C +DG ++P+CV ++E
Sbjct: 188 IPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTC--IDGKWNPILPTCVRSNEEFD 245
Query: 713 PVEEISD 693
P+++ D
Sbjct: 246 PIDDDPD 252
>emb|CAA96577.1| (Z72496) mucin MUC5B [Homo sapiens]
Length = 3570
Score = 36.4 bits (82), Expect = 0.51
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Frame = +1
Query: 487 STGAST-GTAILVTEHGTPMNS-ASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSF 660
ST +ST GT ++TE T + A++P G ++ G T +LT + ++T+ +GS
Sbjct: 1770 STPSSTPGTTWILTELTTAATTTAALPHGTPS---STPGTTWILTEPSTTATVTVPTGST 1826
Query: 661 KSCASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKHDCLLLPSARKSTKQPNTT 837
+ +S G+L T S+ TT ++ PS+S LP+ R + P T
Sbjct: 1827 ATASSTRATAGTLKVLT----STATTPTVISSRATPSSSPGTATALPALRSTATTPTAT 1881
Score = 33.2 bits (74), Expect = 4.5
Identities = 35/138 (25%), Positives = 61/138 (43%), Gaps = 15/138 (10%)
Frame = +1
Query: 481 LTSTGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAV----LT*SNL-----RV 633
LTST T +++ TP +S L T+ PTA + S+L R+
Sbjct: 1842 LTSTAT---TPTVISSRATPSSSPGTATALPALRSTATTPTATSVTAIPSSSLGTAWTRL 1898
Query: 634 SITMSSGSFKSCASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKHDCLLLPSARK 813
S T + + S A+P+ ++ +ST ++ TT G + + +P+
Sbjct: 1899 SQTTTPTATMSTATPSSTPETVHTSTVLTTTATTTRTGSVATPSSTPGTAHTTKVPTTTT 1958
Query: 814 S------TKQPNTTMPPPWYMSWCMLPIPRSGT 894
+ + P T + PP ++S P R T
Sbjct: 1959 TGFTATPSSSPGTALTPPVWISTTTTPTTRGST 1991
>pir||T16509 hypothetical protein F59A6.3 - Caenorhabditis elegans
gb|AAA83456.1| (U41994) similar to glycoproteins [Caenorhabditis elegans]
Length = 786
Score = 36.4 bits (82), Expect = 0.51
Identities = 35/118 (29%), Positives = 57/118 (47%), Gaps = 8/118 (6%)
Frame = +1
Query: 484 TSTGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVL---T*SNLRVSIT---- 642
T++G ST + + P S+ +R + T+ GP+ T S VS T
Sbjct: 485 TTSGQSTSSGTTKSTTSGPTTSSGPSTVSERTLSTTSGPSTTSGPSTTSGSTVSTTPGAS 544
Query: 643 MSSGSFKSCAS-PTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKHDCLLLPSARKST 819
+SGS +S S P+ + G +S S+V+T G + + PST+ S + +T
Sbjct: 545 TTSGSTQSTTSGPSTSSGPSTASR----STVSTTSGPSTTSGPSTTSGPSTTSGSTKSTT 600
Query: 820 KQPNTT 837
P+TT
Sbjct: 601 SGPSTT 606
Score = 34.0 bits (76), Expect = 2.6
Identities = 37/121 (30%), Positives = 55/121 (44%), Gaps = 6/121 (4%)
Frame = +1
Query: 484 TSTGASTGTAI-LVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSF 660
TS+G++ T T GT ++ S P TS GP+ V T+S+ S
Sbjct: 477 TSSGSTVSTTSGQSTSSGTTKSTTSGPT-------TSSGPSTVS-------ERTLSTTSG 522
Query: 661 KSCAS-PTLAKGSLISSTGWRL----SSVTTHEGMTHSQQPSTSKHDCLLLPSARKSTKQ 825
S S P+ GS +S+T S+ +T G + S PST+ + S +T
Sbjct: 523 PSTTSGPSTTSGSTVSTTPGASTTSGSTQSTTSGPSTSSGPSTASRSTVSTTSGPSTTSG 582
Query: 826 PNTTMPP 846
P+TT P
Sbjct: 583 PSTTSGP 589
>pir||T22808 hypothetical protein F56H9.1 - Caenorhabditis elegans
emb|CAA98949.1| (Z74473) predicted using Genefinder [Caenorhabditis elegans]
Length = 770
Score = 36.0 bits (81), Expect = 0.67
Identities = 29/121 (23%), Positives = 47/121 (37%)
Frame = +1
Query: 484 TSTGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFK 663
T+T ++T T + T T + P T+V PT T + V T +S +
Sbjct: 70 TTTSSTTTTTVPPTTTSTTTTTTVPPTTTSTTTTTTVPPTTTSTTTTTTVPPTTTSSTTT 129
Query: 664 SCASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKHDCLLLPSARKSTKQPNTTMP 843
+ PT S+T + TT T + P+T+ A ++ TT+P
Sbjct: 130 TTVPPTTTS----STTTTTVPPTTTTSTTTTTVPPTTTSTTTTTTVPATTTSTATTTTVP 185
Query: 844 P 846
P
Sbjct: 186 P 186
>emb|CAB06616.1| (Z84818) GP80 [Bovine herpesvirus 4]
Length = 273
Score = 35.2 bits (79), Expect = 1.2
Identities = 31/124 (25%), Positives = 54/124 (43%)
Frame = +1
Query: 469 SLVRLTSTGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMS 648
S V TST S+ + +P +S+ + PTA T + S T +
Sbjct: 44 STVTSTSTSTSSNASTSSVSSPSPSSSSVPSTATSSSSSPTSTPTATTTTATSSTS-TNT 102
Query: 649 SGSFKSCASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKHDCLLLPSARKSTKQP 828
+ S + S T ++ + ++ST ++ TT T S ++S + +A ST+ P
Sbjct: 103 TSSVSTTVSSTASQSTTLTSTSTNQTTNTTTTSSTPSNTTTSS------VSTAVSSTESP 156
Query: 829 NTTM 840
NTT+
Sbjct: 157 NTTL 160
>gb|AAG13365.1| (AF268172) polyprotein [bovine viral diarrhea virus type 2]
Length = 411
Score = 34.8 bits (78), Expect = 1.5
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V GKD LVC S+G T V+ SN +++ G
Sbjct: 314 GLETGWAY--THQGGISSVDHVTAGKDLLVCDSMGRTRVVCHSNNKMTDETEYGIKTDSG 371
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKH-DCL 792
P A+ +++ +S T M H Q+ S H CL
Sbjct: 372 CPEGARCYVLNPEAVNISG--TKGAMVHLQKTGGSSHVSCL 410
>pir||S24169 mucin - rat
Length = 292
Score = 34.4 bits (77), Expect = 2.0
Identities = 40/157 (25%), Positives = 63/157 (39%), Gaps = 3/157 (1%)
Frame = +1
Query: 484 TSTGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFK 663
TST + T T T TP ++++VP G + +T S S S +
Sbjct: 73 TSTTSQTPTPTPTTIKETPTSTSTVPTTGSTSSKPPTGSSTPIT-SPSTPSPPTESTTLS 131
Query: 664 SCASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKHDCLL--LPSARKSTKQPNT- 834
S T A S SS G T+ T PS++ +P++ K+T P +
Sbjct: 132 STPVTTTATSSTTSSPGTTSPFATSSVSSTPPSPPSSTSGPTTSSGMPTSSKTTTGPTSP 191
Query: 835 TMPPPWYMSWCMLPIPRSGTPSLDISHVLSRCQRLECPRT 954
T PP + +P S T ++ + + S +E RT
Sbjct: 192 TTRPPSTSTPTSPTVPTSTTEAITQTRLSSTTPTMETTRT 231
>pir||JW0067 chitinase (EC 3.2.1.14) A - Emericella nidulans
Length = 660
Score = 34.0 bits (76), Expect = 2.6
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Frame = +1
Query: 448 TRELCELSLVRLTSTGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSV---GPTAVLT* 618
TR + E S TST + T++ + P S+SVP T V P +T
Sbjct: 494 TRAVSETSTHISTSTSSGPETSLTGSSTSVPATSSSVPSSAISPSSTPVISETPRPPVTS 553
Query: 619 SNLRVSITMSSGSFKSCASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSK------ 780
S+ ++ +S S C+ + A G+ SS+ W S +T + S P T+K
Sbjct: 554 SSSSTFVSSTSTS-TDCSESSTAIGTHSSSSIWETPSAST-PAASPSTSPETTKTLTVFP 611
Query: 781 ---HDCL-----------LLPSARKSTKQPNTTMPP 846
CL L P +T++P PP
Sbjct: 612 RRAPPCLPEPPPRPLCPALFPQLAVATRKPQPCQPP 647
>gb|AAB86941.1| (AF030944) microfilarial sheath protein SHP3 precursor [Brugia
malayi]
Length = 222
Score = 33.2 bits (74), Expect = 4.5
Identities = 35/116 (30%), Positives = 47/116 (40%)
Frame = +1
Query: 490 TGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSC 669
T AS+ T T T ++S V TS TA T S S+T S+ S +
Sbjct: 23 TSASSSTTSKSTTSVTTSTASSTTSKSTTSVTTS---TASSTTSKSTTSVTTSTASSTTS 79
Query: 670 ASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKHDCLLLPSARKSTKQPNTT 837
S T S SST +S +T T + +TSK + S ST +TT
Sbjct: 80 QSTTSVTTSTASST----TSKSTTSVTTSTASSTTSKSTTSVTTSTASSTTSKSTT 131
Score = 32.5 bits (72), Expect = 7.6
Identities = 30/112 (26%), Positives = 46/112 (40%), Gaps = 1/112 (0%)
Frame = +1
Query: 484 TSTGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGP-TAVLT*SNLRVSITMSSGSF 660
++T +T TA T T + S TSV TA T S S+T S+ S
Sbjct: 33 STTSVTTSTASSTTSKSTTSVTTSTASSTTSKSTTSVTTSTASSTTSQSTTSVTTSTASS 92
Query: 661 KSCASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKHDCLLLPSARKST 819
+ S T S SST + ++ T + + ST+ + +PS +T
Sbjct: 93 TTSKSTTSVTTSTASSTTSKSTTSVTTSTASSTTSKSTTTATTVKMPSTASTT 145
>emb|CAA75280.1| (Y15035) B4R [Cowpox virus]
Length = 317
Score = 33.2 bits (74), Expect = 4.5
Identities = 18/67 (26%), Positives = 32/67 (46%)
Frame = -2
Query: 893 VPDLGIGSMHQLIYQGGGIVVFGCFVDFLALGSNKQSCLEVDGCCE*VIPSCVVTDERRQ 714
+P L G + + GG++ C F GS +C +DG ++P+CV ++E
Sbjct: 188 IPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTC--IDGKWNPILPTCVRSNEEFD 245
Query: 713 PVEEISD 693
V++ D
Sbjct: 246 LVDDGPD 252
>gb|AAA88880.1| (U21329) NS3 polyprotein [Hog cholera virus]
Length = 877
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 52 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 109
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 110 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 138
>gb|AAA88879.1| (U21328) NS3 polyprotein [Hog cholera virus]
Length = 873
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 52 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 109
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 110 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 138
>pir||S55315 mucin (clone PGM-2A) - pig
pir||I47141 gastric mucin (clone PGM-2A) - pig (fragment)
gb|AAC48526.1| (U10281) gastric mucin [Sus scrofa]
Length = 528
Score = 32.5 bits (72), Expect = 7.6
Identities = 37/122 (30%), Positives = 54/122 (43%)
Frame = +1
Query: 484 TSTGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFK 663
+S+ A T +A V P +S+S P V TS + T + S+ SS S
Sbjct: 168 SSSSAPTTSATSVQ----PSSSSSPPISSTVSVQTSSSSSVPTTSTT---SVQPSSSSSV 220
Query: 664 SCASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPSTSKHDCLLLPSARKSTKQPNTTMP 843
S T + S SST + S T+ + + S P+TS + PS+ ST P+TT
Sbjct: 221 PTTSATSVRSSSSSSTP--IPSTTSVQPSSSSSAPTTSATS--VQPSSSSSTPIPSTTSV 276
Query: 844 PP 849
P
Sbjct: 277 QP 278
>pir||S58295 polyprotein - hog cholera virus
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>gb|AAB50409.1| (U90951) polyprotein [pestivirus type 2]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>dbj|BAA08476.1| (D49532) hog cholera virus polyprotein [pestivirus type 2]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>emb|CAA65386.1| (X96550) complete genome [Hog cholera virus]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGSMVHLQK 1726
>gb|AAA86909.1| (U45478) polyprotein [Hog cholera virus]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGSMVHLQK 1726
>gb|AAC68902.2| (AF092448) polyprotein [Hog cholera virus]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>gb|AAA86908.1| (U45477) polyprotein [Hog cholera virus]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>sp|P19712|POLG_HCVA GENOME POLYPROTEIN
pir||GNWVHC genome polyprotein - hog cholera virus (strain Alfort)
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>dbj|BAA08477.1| (D49533) hog cholera virus polyprotein [pestivirus type 2]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>gb|AAA43844.2| (J04358) polyprotein [Hog cholera virus]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>emb|CAA86367.1| (Z46258) polyprotein [Hog cholera virus]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>pir||S57437 genome polyprotein - hog cholera virus
emb|CAA61161.1| (X87939) Hog cholera virus
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>ref|NP_056778.1| hog cholera virus protein precursor
sp|P21530|POLG_HCVB GENOME POLYPROTEIN
pir||GNWVHB genome polyprotein - hog cholera virus (strain Brescia)
gb|AAA43843.1| (M31768) hog cholera virus protein precursor [Hog cholera virus]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNREAVNISG--TKGAMVHLQK 1726
>gb|AAC62087.1| (AF091661) polyprotein [Hog cholera virus]
Length = 3898
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1640 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1697
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1698 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1726
>prf||2119294A YFW1 gene [Saccharomyces cerevisiae]
Length = 605
Score = 32.5 bits (72), Expect = 7.6
Identities = 26/87 (29%), Positives = 39/87 (43%)
Frame = +3
Query: 96 TSNSHPLLQAGA*LSLNG*PGYCSSTSKASVLL*VLCLPTSHHSDELSLNFTPANHSFTL 275
+S+S P + A +S + +STS S PTS + S N TP + +FT
Sbjct: 238 SSSSTPTTTSSAPISTSTTSSTSTSTSTTS--------PTSSSAPTSSSNTTPTSTTFTT 289
Query: 276 RTWQSLQLSTMVTFPTQKLQPYTLYIT 356
+ + ST VT+ + P T IT
Sbjct: 290 TSPSTAPSSTTVTYTSTTASPITSTIT 316
>ref|NP_011835.1| Putative integral membrane protein containing novel cysteine motif.
Similarity to SLG1 (WSC1), WSC2 and WSC3; Wsc4p
sp|P38739|YHC8_YEAST HYPOTHETICAL 63.8 KD PROTEIN IN GUT1-RIM1 INTERGENIC REGION
PRECURSOR
pir||S48940 hypothetical protein YHL028w - yeast (Saccharomyces cerevisiae)
gb|AAB65040.1| (U11583) Similiar to mucin and several other Ser-Thr-rich proteins
[Saccharomyces cerevisiae]
Length = 605
Score = 32.5 bits (72), Expect = 7.6
Identities = 26/87 (29%), Positives = 39/87 (43%)
Frame = +3
Query: 96 TSNSHPLLQAGA*LSLNG*PGYCSSTSKASVLL*VLCLPTSHHSDELSLNFTPANHSFTL 275
+S+S P + A +S + +STS S PTS + S N TP + +FT
Sbjct: 238 SSSSTPTTTSSAPISTSTTSSTSTSTSTTS--------PTSSSAPTSSSNTTPTSTTFTT 289
Query: 276 RTWQSLQLSTMVTFPTQKLQPYTLYIT 356
+ + ST VT+ + P T IT
Sbjct: 290 TSPSTAPSSTTVTYTSTTASPITSTIT 316
>gb|AAB71465.1| (AC000098) EST gb|ATTS1136 comes from this gene. [Arabidopsis
thaliana]
Length = 402
Score = 32.5 bits (72), Expect = 7.6
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Frame = +1
Query: 487 STGASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKS 666
S+ AST T+ T + T + G S PT+ + S S + S+ S K+
Sbjct: 94 SSTASTSTSSYSTSYSTSSTKTTTMTGSTISTTASAAPTSTASTSTSSYSTSYSTSSTKT 153
Query: 667 CASPTLAKGSLISSTGWRLSSVTTHEGMTHSQQPST-SKHDCLLLPSARKS----TKQPN 831
G+ S+ S+ T + + + PS+ SK + +A S T P+
Sbjct: 154 TTVTGSTIGTTASAAPTSTSTSTANSSASSTTNPSSGSKPTAMTGTTANTSPSAPTSSPS 213
Query: 832 TT 837
TT
Sbjct: 214 TT 215
>gb|AAC98302.2| (AF099102) polyprotein [Hog cholera virus]
Length = 3426
Score = 32.5 bits (72), Expect = 7.6
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 493 GASTGTAILVTEHGTPMNSASVPCGKDRLVCTSVGPTAVLT*SNLRVSITMSSGSFKSCA 672
G TG A T G + V CGKD LVC ++G T V+ SN +++ G
Sbjct: 1501 GLETGWAY--THQGGISSVDHVTCGKDLLVCDTMGRTRVVCQSNNKMTDESEYGVKTDSG 1558
Query: 673 SPTLAKGSLISSTGWRLSSVTTHEGMTHSQQ 765
P A+ + + +S T M H Q+
Sbjct: 1559 CPEGARCYVFNPEAVNISG--TKGAMVHLQK 1587
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328182508
Number of Sequences: 565281
Number of extensions: 7121463
Number of successful extensions: 21191
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 21130
Number of HSP's gapped (non-prelim): 85
length of query: 331
length of database: 177,575,912
effective HSP length: 54
effective length of query: 276
effective length of database: 147,050,738
effective search space: 40586003688
effective search space used: 40586003688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)