Score E
Sequences producing significant alignments: (bits) Value
gb|AAC32811.1| (AF043636) circumsporozoite protein [Plasmod... 44 0.002
gb|AAC25978.1| (AF007575) ES/130-related protein [Homo sapi... 44 0.003
ref|NP_064115.1| pr1 >gi|9800236|gb|AAF99110.1|AF232689_1 (... 40 0.045
gb|AAG00553.1|AF286474_1 (AF286474) retinitis pigmentosa GT... 38 0.13
dbj|BAA83720.1| (AB017017) GAMP [Procambarus clarkii] 37 0.30
sp|Q02916|NFL_COTJA NEUROFILAMENT TRIPLET L PROTEIN (NEUROF... 36 0.51
pir||B46024 neurofilament-L subunit - quail 36 0.51
gb|AAF81278.1|AF252861_1 (AF252861) collagen-like protein S... 36 0.67
dbj|BAA94345.1| (AB035520) parchorin [Oryctolagus cuniculus] 36 0.88
gb|AAG00552.1|AF286473_1 (AF286473) retinitis pigmentosa GT... 35 1.5
prf||2009326A beta glucosidase [Cellvibrio gilvus] 35 1.5
gb|AAG00551.1| (AF286472) retinitis pigmentosa GTPase regul... 35 1.5
pir||E75383 conserved hypothetical protein - Deinococcus ra... 35 1.5
emb|CAB62715.1| (AL133423) putative secreted protein [Strep... 35 1.5
pir||T31555 hypothetical protein Y53H1C.2 - Caenorhabditis ... 35 1.5
gb|AAG01128.1|AF273333_13 (AF273333) BAC19.13 [Lycopersicon... 34 2.0
emb|CAB09569.2| (Z96795) hypothetical protein [Trypanosoma ... 34 2.6
pir||T02785 probable homeotic protein - rice >gi|2935575|gb... 34 2.6
pir||F70868 hypothetical glycine-rich protein Rv2487c - Myc... 34 3.4
pir||T04623 cruciferin F20O9.210 - Arabidopsis thaliana >gi... 34 3.4
dbj|BAB08783.1| (AB011482) contains similarity to AAA-type ... 34 3.4
pir||S04789 mobilization protein mobA - Escherichia coli pl... 33 4.5
gb|AAA32989.1| (J05233) cruciferin precursor [Brassica napus] 33 4.5
emb|CAB89812.1| (AJ276683) convicilin [Lens culinaris] 33 4.5
pir||T02634 rep protein homolog - slime mold (Dictyostelium... 33 4.5
pir||A35540 cruciferin 1 precursor - rape 33 4.5
sp|P33525|CRU3_BRANA CRUCIFERIN CRU1 PRECURSOR (11S GLOBULI... 33 4.5
pir||B44841 low molecular weight neurofilament protein XNF-... 33 4.5
sp|P35616|NFL_XENLA NEUROFILAMENT TRIPLET L PROTEIN (NEUROF... 33 4.5
pir||T25711 hypothetical protein F19F10.7 - Caenorhabditis ... 33 4.5
ref|NP_040275.1| ORF 73; ECLF1 >gi|266334|sp|Q01042|IE68_HS... 33 5.8
prf||1804350B ECLF2 upstream ORF [Saimiriine herpesvirus 1] 33 5.8
gb|AAF23506.1|AF216868_1 (AF216868) glutenin, high molecula... 33 5.8
gb|AAF89661.1|AF168782_1 (AF168782) acinusL protein [Mus mu... 33 5.8
gb|AAF96084.1| (AE004357) conserved hypothetical protein [V... 33 5.8
pir||I53641 mucin - human (fragment) >gi|945219|gb|AAC41774... 33 5.8
gb|AAC34964.1| (AF023853) ElpB2 [Borrelia burgdorferi] >gi|... 32 7.6
pir||A35938 profilaggrin - human (fragments) 32 7.6
pir||A26049 cAMP receptor protein - Salmonella typhimurium ... 32 7.6
>gb|AAC32811.1| (AF043636) circumsporozoite protein [Plasmodium chabaudi]
Length = 513
Score = 44.1 bits (102), Expect = 0.002
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Frame = +1
Query: 445 RGAQAGQGARVERGAQ----EQGTQASRAEQESRGAQAWRGAQ----EQGTQASQAEQES 600
+G Q GQG + ++G Q +QG Q + +Q +G Q +GAQ QG Q Q +Q
Sbjct: 238 QGDQGGQGVQGDQGGQGVQGDQGGQGVQGDQGGQGGQGGQGAQGAQGGQGGQGVQGDQGG 297
Query: 601 RGARAGQESRE*GIQASRGAQ-EWGAQ 678
+G + GQ + G Q +G Q + GAQ
Sbjct: 298 QGGQGGQGGQ--GGQGGQGGQGDQGAQ 322
>gb|AAC25978.1| (AF007575) ES/130-related protein [Homo sapiens]
Length = 560
Score = 43.8 bits (101), Expect = 0.003
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +1
Query: 436 KESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARA 615
K++ GAQ QG + E GAQ QGT+A A+ + + A+ GAQ QG +A A+ + + A
Sbjct: 284 KKAEGAQ-NQGKKAE-GAQNQGTKAEGAQNQGKKAE---GAQNQGKKAEGAQNQGKKAEG 338
Query: 616 GQESRE*GIQASRGAQEWGAQA 681
Q + + GAQ G +A
Sbjct: 339 AQNQG----KKAEGAQNQGKKA 356
Score = 42.6 bits (98), Expect = 0.007
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +1
Query: 436 KESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARA 615
K++ GAQ QG + + GAQ QG +A A+ + + A+ GAQ QGT+A A+ + + A
Sbjct: 264 KKAEGAQ-NQGKKAD-GAQNQGKKAEGAQNQGKKAE---GAQNQGTKAEGAQNQGKKAEG 318
Query: 616 GQESRE*GIQASRGAQEWGAQA 681
Q + + GAQ G +A
Sbjct: 319 AQNQG----KKAEGAQNQGKKA 336
>ref|NP_064115.1| pr1
gb|AAF99110.1|AF232689_1 (AF232689) pr1 [rat cytomegalovirus Maastricht]
Length = 218
Score = 39.9 bits (91), Expect = 0.045
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +1
Query: 454 QAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE 633
++G+G ERGA+ +G + R + ESR R +E+G + S+ QE G G+
Sbjct: 154 KSGEGKSGERGAERRGEE--RTDSESR----QRREEEKGDRCSERRQEEEGEGGGE---- 203
Query: 634 *GIQASRGAQEWGAQ 678
G + ++G ++WG +
Sbjct: 204 -GREKAKGGRKWGGR 217
>gb|AAG00553.1|AF286474_1 (AF286474) retinitis pigmentosa GTPase regulator [Bos taurus]
Length = 934
Score = 38.3 bits (87), Expect = 0.13
Identities = 29/92 (31%), Positives = 46/92 (49%), Gaps = 2/92 (2%)
Frame = +1
Query: 439 ESRGAQAGQGARVERGAQEQG-TQASRAEQESRGAQAWRGAQE-QGTQASQAEQESRGAR 612
E +G + GQ E G +E+G + E+E G +A G +E +G + + E+E G
Sbjct: 460 EGKGDEEGQ----EGGREEEGDREGQEGEEEGEGEEAGEGEEEGEGEEEGEGEEEGEGEE 515
Query: 613 AGQESRE*GIQASRGAQEWGAQACRE*QR*GKKE 714
AG E E G R +E G + E + G++E
Sbjct: 516 AG-EGEEAGEGKGREEEEKGEEGEGEEKVGGEEE 548
Score = 32.5 bits (72), Expect = 7.6
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +1
Query: 436 KESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARA 615
+E G +AG+G E + +G + +E G + G +E+ + + E+E
Sbjct: 509 EEGEGEEAGEG---EEAGEGKGREEEEKGEEGEGEEKVGGEEEEDGEGQEGEEEEEEEGD 565
Query: 616 GQESRE 633
G+E E
Sbjct: 566 GEEEEE 571
>dbj|BAA83720.1| (AB017017) GAMP [Procambarus clarkii]
Length = 505
Score = 37.1 bits (84), Expect = 0.30
Identities = 23/70 (32%), Positives = 39/70 (54%)
Frame = +1
Query: 481 RGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE*GIQASRGA 660
+ AQEQ + A+++++ QA AQEQ + A+++++ +A QE + G A A
Sbjct: 80 QAAQEQAQEGQAAQEQAQKGQA---AQEQAQEGQVAQEQAQEGQAAQEQAQKGQVAQEQA 136
Query: 661 QEWGAQACRE 690
QE QA +E
Sbjct: 137 QE--GQAAQE 144
Score = 36.4 bits (82), Expect = 0.51
Identities = 21/73 (28%), Positives = 38/73 (51%)
Frame = +1
Query: 448 GAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQES 627
G A + A+ + AQEQ + A+++++ Q AQEQ + A+++++ + QE
Sbjct: 79 GQAAQEQAQEGQAAQEQAQKGQAAQEQAQEGQV---AQEQAQEGQAAQEQAQKGQVAQEQ 135
Query: 628 RE*GIQASRGAQE 666
+ G A AQE
Sbjct: 136 AQEGQAAQEQAQE 148
Score = 35.6 bits (80), Expect = 0.88
Identities = 24/103 (23%), Positives = 49/103 (47%)
Frame = +1
Query: 454 QAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE 633
QA +G + AQE +A++E + + AQEQ + A+++++ + QE +
Sbjct: 125 QAQKGQVAQEQAQEGQAAQEQAQEEQLAQEQAQVAQEQAQEGQAAQEQAQEEQLAQEQAQ 184
Query: 634 *GIQASRGAQEWGAQACRE*QR*GKKESPWYR*RRQWCKGQSQ 762
G Q ++ + G Q +E + G++ + Q + Q+Q
Sbjct: 185 EGQQVAQEQAQEGQQVPQEQAQEGQQVAQEQAQEEQLAQEQAQ 227
>sp|Q02916|NFL_COTJA NEUROFILAMENT TRIPLET L PROTEIN (NEUROFILAMENT LIGHT POLYPEPTIDE)
(NF-L)
dbj|BAA02504.1| (D13223) neurofilament-L [Coturnix coturnix]
Length = 556
Score = 36.4 bits (82), Expect = 0.51
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 439 ESRGAQAGQGARVERG-AQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARA 615
E++ A A +G E+ +E+ AE+E GA+ E+G + + E E A
Sbjct: 467 EAKAAPAEEGEEEEKEEGEEEEAGGEEAEEEEEGAKE---ESEEGKEGEEEEGEETAAED 523
Query: 616 GQESRE*GIQASRGAQEWGAQACRE*QR*GKKES 717
G+ES+E A+E G + E + GK+E+
Sbjct: 524 GEESQE-------TAEETGEEEKEEKEAAGKEET 550
>pir||B46024 neurofilament-L subunit - quail
Length = 556
Score = 36.4 bits (82), Expect = 0.51
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 439 ESRGAQAGQGARVERG-AQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARA 615
E++ A A +G E+ +E+ AE+E GA+ E+G + + E E A
Sbjct: 467 EAKAAPAEEGEEEEKEEGEEEEAGGEEAEEEEEGAKE---ESEEGKEGEEEEGEETAAED 523
Query: 616 GQESRE*GIQASRGAQEWGAQACRE*QR*GKKES 717
G+ES+E A+E G + E + GK+E+
Sbjct: 524 GEESQE-------TAEETGEEEKEEKEAAGKEET 550
>gb|AAF81278.1|AF252861_1 (AF252861) collagen-like protein Scl [Streptococcus pyogenes]
Length = 348
Score = 36.0 bits (81), Expect = 0.67
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 424 PRAWKESRGAQAGQGARVERGAQ-EQGTQASRAEQESRGAQAWRGAQ-EQGTQASQAEQE 597
P+ RGAQ +G R E+G Q + G + R E+ +G RG + E G Q Q E
Sbjct: 125 PQGKTGERGAQGPKGDRGEQGIQGKAGEKGERGEKGDKGETGERGEKGEAGIQGPQGEAG 184
Query: 598 SRGA----RAGQESRE*GIQASRGAQ 663
GA A E E G + GAQ
Sbjct: 185 KDGAPGKDGAPGEKGEKGDRGETGAQ 210
>dbj|BAA94345.1| (AB035520) parchorin [Oryctolagus cuniculus]
Length = 637
Score = 35.6 bits (80), Expect = 0.88
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +1
Query: 430 AWKESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGA 609
A +E+ G + G+GA + A + GT++ +++GAQ +GT+A Q +E G
Sbjct: 59 ATEEASGGRDGEGAGEQ--APDAGTESGGETPDAKGAQIEAEGAPEGTKAPQLGEEGSGG 116
Query: 610 RAGQES 627
+ +ES
Sbjct: 117 KQVEES 122
>gb|AAG00552.1|AF286473_1 (AF286473) retinitis pigmentosa GTPase regulator [Mus musculus]
Length = 538
Score = 34.8 bits (78), Expect = 1.5
Identities = 17/66 (25%), Positives = 32/66 (47%), Gaps = 2/66 (3%)
Frame = +1
Query: 436 KESRGAQAGQGARVERGAQE-QGTQASRAEQESRGAQAWRGAQE-QGTQASQAEQESRGA 609
+E G + G+G G +E +G + E+E G + G +E +G + + E++ G
Sbjct: 246 EEGEGEEEGEGEEEGEGEEEGEGEEEGEGEEEGEGEEEGEGEEEGEGEEDGEGEEDGEGE 305
Query: 610 RAGQESRE 633
G+ E
Sbjct: 306 EEGEGEEE 313
Score = 34.8 bits (78), Expect = 1.5
Identities = 23/93 (24%), Positives = 41/93 (43%), Gaps = 2/93 (2%)
Frame = +1
Query: 436 KESRGAQAGQGARVERGAQE-QGTQASRAEQESRGAQAWRGAQE-QGTQASQAEQESRGA 609
+E G + G+G G +E +G + E++ G + G +E +G + + E+E G
Sbjct: 288 EEGEGEEDGEGEEDGEGEEEGEGEEEGEREEDGEGEEDGEGEEEGEGEEEGEGEEEGEGE 347
Query: 610 RAGQESRE*GIQASRGAQEWGAQACRE*QR*GKKE 714
G+ E G EW + E + G+ E
Sbjct: 348 EEGEGEGE-----EEGEGEWEGEEEGEGEEEGEGE 377
Score = 34.4 bits (77), Expect = 2.0
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 436 KESRGAQAGQGARVERG-AQEQGTQASRAEQESRGAQAWRGAQE-QGTQASQAEQESRGA 609
+E G + G+G G +E+G E+E G + G +E +G + + E+E G
Sbjct: 336 EEGEGEEEGEGEEEGEGEGEEEGEGEWEGEEEGEGEEEGEGEEEGEGEEEGEGEEEGEGE 395
Query: 610 RAGQESRE 633
G E E
Sbjct: 396 EEGGEDDE 403
Score = 32.8 bits (73), Expect = 5.8
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 436 KESRGAQAGQGARVERGAQE-QGTQASRAEQESRGAQAWRGAQE-QGTQASQAEQESRGA 609
+E G + G+G G +E +G + E++ G + G +E +G + + E++ G
Sbjct: 264 EEGEGEEEGEGEEEGEGEEEGEGEEEGEGEEDGEGEEDGEGEEEGEGEEEGEREEDGEGE 323
Query: 610 RAGQESRE 633
G+ E
Sbjct: 324 EDGEGEEE 331
Score = 32.5 bits (72), Expect = 7.6
Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 2/63 (3%)
Frame = +1
Query: 436 KESRGAQAGQGARVERGAQE-QGTQASRAEQESRGAQAWRGAQE-QGTQASQAEQESRGA 609
+E G + G+G E G E +G + E+E G + G +E +G + + E+E
Sbjct: 342 EEGEGEEEGEGEGEEEGEGEWEGEEEGEGEEEGEGEEEGEGEEEGEGEEEGEGEEEGGED 401
Query: 610 RAGQE 624
G+E
Sbjct: 402 DEGEE 406
>prf||2009326A beta glucosidase [Cellvibrio gilvus]
Length = 854
Score = 34.8 bits (78), Expect = 1.5
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +1
Query: 427 RAWKESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRG 606
+ W +R Q Q +RG Q + RA+ G G EQG A+ +Q SRG
Sbjct: 638 QGWPPARALQGDQHR--QRGRQGRAAGVRRADVHQMGGAEAPGRLEQGRPAAGRDQGSRG 695
Query: 607 ----ARAGQESRE 633
ARAG RE
Sbjct: 696 RGGAARAGHVRRE 708
>gb|AAG00551.1| (AF286472) retinitis pigmentosa GTPase regulator [Homo sapiens]
Length = 567
Score = 34.8 bits (78), Expect = 1.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 439 ESRGAQAGQGARVERGAQEQGT-QASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARA 615
E RG + +G VE G E+G + E+E G + +E+ + + E E +G
Sbjct: 217 EGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEE 276
Query: 616 GQE 624
G+E
Sbjct: 277 GEE 279
>pir||E75383 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11109.1|AE001998_6 (AE001998) conserved hypothetical protein [Deinococcus radiodurans]
Length = 581
Score = 34.8 bits (78), Expect = 1.5
Identities = 25/72 (34%), Positives = 37/72 (50%)
Frame = +1
Query: 451 AQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESR 630
AQA AR + AQ+Q A+RAE ++R A+ Q Q +QA Q+ R +E R
Sbjct: 387 AQAEAAARAQ--AQQQAAAAARAEAQARAAR-------QAQQQAQAAQKVREQAVAREQR 437
Query: 631 E*GIQASRGAQE 666
+ Q + AQ+
Sbjct: 438 DLQTQQQQTAQQ 449
>emb|CAB62715.1| (AL133423) putative secreted protein [Streptomyces coelicolor A3(2)]
Length = 1545
Score = 34.8 bits (78), Expect = 1.5
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 12/88 (13%)
Frame = +1
Query: 427 RAWKESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQ------- 585
+A KE+ + + A + AQ++ T+A A++ + A + +G +A++
Sbjct: 712 KAEKETAAQKQAEAAEHKTKAQQRATEAKDAKERAETADTTATEKRKGAEAARDKAKALR 771
Query: 586 -----AEQESRGARAGQESRE*GIQASRGAQEWGAQACRE 690
AEQ++ ARA +++E QAS A E AQ R+
Sbjct: 772 DDAWDAEQKANAARAKADAKEAYAQAS--ASEDNAQEARK 809
>pir||T31555 hypothetical protein Y53H1C.2 - Caenorhabditis elegans
emb|CAB55064.1| (AL117201) predicted using Genefinder [Caenorhabditis elegans]
Length = 1400
Score = 34.8 bits (78), Expect = 1.5
Identities = 31/80 (38%), Positives = 42/80 (51%), Gaps = 5/80 (6%)
Frame = +1
Query: 448 GAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQ--EQGTQASQ-AEQESRGARAG 618
GAQ QGA GAQ A A+ GAQ +GAQ QG Q Q Q ++GA G
Sbjct: 870 GAQGAQGAHF--GAQGVQFGAQGAQGAHFGAQGAQGAQFGAQGAQGEQFGAQGAQGAHFG 927
Query: 619 QESRE*GIQASRGAQ--EWGAQACR 687
+ + ++GAQ ++GAQ +
Sbjct: 928 AQGAQGAHFGAQGAQGTQFGAQGAQ 952
>gb|AAG01128.1|AF273333_13 (AF273333) BAC19.13 [Lycopersicon esculentum]
Length = 499
Score = 34.4 bits (77), Expect = 2.0
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 427 RAWKESRGAQAGQGARVERG-AQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESR 603
R +E +A + R+E AQ + +A R +QE +A R +E T+ + E+E
Sbjct: 376 RQHEEEAEREAEEARRIEEEEAQREAEEARRIQQEEEAERARRREEEAETRRKE-EEEEE 434
Query: 604 GARAGQESRE*GIQASRGAQ 663
R +ESR +A+R A+
Sbjct: 435 SRRQEEESRRSEEEAAREAE 454
>emb|CAB09569.2| (Z96795) hypothetical protein [Trypanosoma brucei]
Length = 679
Score = 34.0 bits (76), Expect = 2.6
Identities = 30/119 (25%), Positives = 41/119 (34%)
Frame = +1
Query: 322 GGRGRWQKAGWEREPXXXXXXXXXXXXXXXXXXXPRAWKESRGAQAGQGARVERGAQEQG 501
GGRG W G +R + SRG +G + ++ G
Sbjct: 78 GGRGEWGDRGGQRGDNQRDYGDQRNYDN----------RGSRGEWGDRGGQRGGNQRDYG 127
Query: 502 TQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE*GIQASRGAQEWGAQ 678
Q + + SRG RG Q G Q +Q + R G+ G RG Q G Q
Sbjct: 128 DQRNYDNRGSRGEWGDRGGQRGGNQRDYGDQRNYDNRGGR-----GEWGDRGGQRGGNQ 181
Score = 33.6 bits (75), Expect = 3.4
Identities = 33/117 (28%), Positives = 42/117 (35%), Gaps = 10/117 (8%)
Frame = +1
Query: 322 GGRGRWQKAGWEREPXXXXXXXXXXXXXXXXXXXPRAWKESRGAQAGQGARVERGAQEQG 501
GGRG W G +R R RG Q G R +
Sbjct: 49 GGRGEWGDRGGQR----GDNQRDYRDQRNYDNRGGRGEWGDRGGQRGDNQRDYGDQRNYD 104
Query: 502 TQASRAEQESRGAQAWRGAQEQGTQ------ASQAEQESRGARAGQESRE*GIQAS---- 651
+ SR E RG Q ++ G Q S+ E RG + G R+ G Q +
Sbjct: 105 NRGSRGEWGDRGGQRGGNQRDYGDQRNYDNRGSRGEWGDRGGQRGGNQRDYGDQRNYDNR 164
Query: 652 RGAQEWG 672
G EWG
Sbjct: 165 GGRGEWG 171
>pir||T02785 probable homeotic protein - rice
gb|AAC32818.1| (AF050181) KNOX class homeodomain protein [Oryza sativa]
Length = 357
Score = 34.0 bits (76), Expect = 2.6
Identities = 16/36 (44%), Positives = 22/36 (60%)
Frame = +2
Query: 251 DSHLDTEARGTSGDLNGGSGASRLVVGDGGRRLAGS 358
+S LDT A G G GG+G++RL++ DG GS
Sbjct: 178 ESQLDTIAGGGHGGSGGGAGSARLLLADGKSECVGS 213
>pir||F70868 hypothetical glycine-rich protein Rv2487c - Mycobacterium
tuberculosis (strain H37RV)
emb|CAA16064.1| (AL021246) PE_PGRS [Mycobacterium tuberculosis]
Length = 694
Score = 33.6 bits (75), Expect = 3.4
Identities = 19/49 (38%), Positives = 26/49 (52%)
Frame = +2
Query: 230 GKDTSSGDSHLDTEARGTSGDLNGGSGASRLVVGDGGRRLAGSGSLVAA 376
G D SG S L G +G + G GAS +++G+GG GSG + A
Sbjct: 529 GGDGGSGGSSLGVGGVGGAGGVGGKGGASGMLIGNGGN--GGSGGVGGA 575
>pir||T04623 cruciferin F20O9.210 - Arabidopsis thaliana
gb|AAB17379.1| (U66916) 12S cruciferin seed storage protein [Arabidopsis thaliana]
emb|CAA16892.1| (AL021749) 12S cruciferin seed storage protein [Arabidopsis
thaliana]
emb|CAB81440.1| (AL161573) 12S cruciferin seed storage protein [Arabidopsis
thaliana]
Length = 524
Score = 33.6 bits (75), Expect = 3.4
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 445 RGAQAGQGARVERGAQEQGTQASRAE-QESRGAQAWRGAQEQGTQASQAEQESRGARAGQ 621
+G Q GQ + +G Q Q + + Q+ R Q W G +QG Q Q +Q GQ
Sbjct: 124 QGQQQGQPWQGRQGQQGQPWEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQ 183
Query: 622 ESRE 633
+ ++
Sbjct: 184 QGQQ 187
>dbj|BAB08783.1| (AB011482) contains similarity to AAA-type ATPase~gene_id:MUA2.5
[Arabidopsis thaliana]
Length = 520
Score = 33.6 bits (75), Expect = 3.4
Identities = 29/95 (30%), Positives = 41/95 (42%), Gaps = 2/95 (2%)
Frame = +2
Query: 83 QIHNNSSTTTWQALKSSKSYYIHSEAYYVVINNEQQGKILCS--MMHLQKNGKDTSSGDS 256
++H+NS SSKS + + I CS + + +KN + SS S
Sbjct: 272 EVHSNSELRKLLMKTSSKSIIVIED-------------IDCSINLTNRKKNSSNVSSQRS 318
Query: 257 HLDTEARGTSGDLNGGSGASRLVVGDGGRRLAGSGSL 367
+ D E R SG +GGSG G G + SG L
Sbjct: 319 YYDAETRNGSGSGSGGSGEE----GGNGNTITLSGLL 351
>pir||S04789 mobilization protein mobA - Escherichia coli plasmid ColK
Length = 529
Score = 33.2 bits (74), Expect = 4.5
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Frame = +1
Query: 457 AGQGARVERGAQEQGTQASRAEQESR-------GAQAWRGAQEQGTQASQAEQESRGARA 615
A Q + R A QGT+ RAE +SR G + A++ +A QA +E G A
Sbjct: 255 AEQRVQEARSACRQGTELKRAENQSRYQRTHSSGERTTGDAEQCRERAVQAHRERTGPAA 314
Query: 616 GQESRE*GIQA 648
G+ + E G +A
Sbjct: 315 GRAALEAGQRA 325
>gb|AAA32989.1| (J05233) cruciferin precursor [Brassica napus]
Length = 506
Score = 33.2 bits (74), Expect = 4.5
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 460 GQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE*G 639
G RV G E + + + +G Q W+G Q Q Q Q Q+ + + GQ+ ++ G
Sbjct: 101 GISGRVVPGCAETFMDSQPMQGQQQG-QPWQGQQGQQGQQGQQGQQGQQGQQGQQGQQ-G 158
Query: 640 IQASRGAQEWG 672
Q +G Q+ G
Sbjct: 159 QQGQQGQQQQG 169
>emb|CAB89812.1| (AJ276683) convicilin [Lens culinaris]
Length = 518
Score = 33.2 bits (74), Expect = 4.5
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +1
Query: 424 PRAWKESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQA----WRGAQEQGTQASQAE 591
P W+ S G + + + ++ AQ + R E E + + WRG+Q G ++
Sbjct: 60 PGQWRPSHGKEEDEEEKEQKEAQSGREKWERKEDEEKVVEEEEGEWRGSQRHGDPEERSR 119
Query: 592 QESRGARAGQESRE*GIQASRGAQEWGAQ 678
Q R + ++ E + R Q G +
Sbjct: 120 QRHREEKTKRQVEEQTEEKDRRYQHEGKE 148
>pir||T02634 rep protein homolog - slime mold (Dictyostelium discoideum) plasmid
Ddp5
gb|AAC14390.1| (AF000580) Rep-like [Dictyostelium discoideum]
Length = 1038
Score = 33.2 bits (74), Expect = 4.5
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 436 KESRGAQAGQGARVERGAQEQGTQASRAEQ----ESRGAQAWRGAQEQGTQASQAEQESR 603
+E + Q Q R R QEQ Q + EQ E + Q + QEQ Q Q EQE +
Sbjct: 934 QEQQEQQEQQEQRERREQQEQQEQQEQQEQQEQQEQQEQQEQQEQQEQQEQQEQREQEEQ 993
Query: 604 GARAGQESRE 633
+ QE +E
Sbjct: 994 EEQREQEEQE 1003
Score = 32.8 bits (73), Expect = 5.8
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 427 RAWKESRGAQAGQGARVERGAQEQGTQASRAEQ-ESRGAQAWRGAQEQGTQASQAEQESR 603
R +E + Q Q + ++ QEQ Q + EQ E + Q R +EQ Q Q EQE +
Sbjct: 946 RERREQQEQQEQQEQQEQQEQQEQQEQQEQQEQQEQQEQQEQREQEEQEEQREQEEQEEQ 1005
Query: 604 GARAGQESRE 633
+ QE E
Sbjct: 1006 EEQEEQEEEE 1015
>pir||A35540 cruciferin 1 precursor - rape
Length = 509
Score = 33.2 bits (74), Expect = 4.5
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 460 GQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE*G 639
G RV G E + + + +G Q W+G Q Q Q Q Q+ + + GQ+ ++ G
Sbjct: 104 GISGRVVPGCAETFMDSQPMQGQQQG-QPWQGQQGQQGQQGQQGQQGQQGQQGQQGQQ-G 161
Query: 640 IQASRGAQEWG 672
Q +G Q+ G
Sbjct: 162 QQGQQGQQQQG 172
>sp|P33525|CRU3_BRANA CRUCIFERIN CRU1 PRECURSOR (11S GLOBULIN) (12S STORAGE PROTEIN)
emb|CAA44042.1| (X62120) cuciferin subunit [Brassica napus]
Length = 509
Score = 33.2 bits (74), Expect = 4.5
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 460 GQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE*G 639
G RV G E + + + +G Q W+G Q Q Q Q Q+ + + GQ+ ++ G
Sbjct: 104 GISGRVVPGCAETFMDSQPMQGQQQG-QPWQGQQGQQGQQGQQGQQGQQGQQGQQGQQ-G 161
Query: 640 IQASRGAQEWG 672
Q +G Q+ G
Sbjct: 162 QQGQQGQQQQG 172
>pir||B44841 low molecular weight neurofilament protein XNF-L - African clawed
frog
Length = 544
Score = 33.2 bits (74), Expect = 4.5
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +1
Query: 424 PRAWKESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQA----- 588
P +E + G+G E+G +A E E G Q E+G ++A
Sbjct: 463 PEEEEEEAAEEEGEGGEEAEEEGEEGEEAKEEEAEEEGGQEKEEEGEEGEGEAEAEGDGE 522
Query: 589 -EQESRGARAGQESRE 633
E ES+G A +E E
Sbjct: 523 EEGESKGDEAAEEESE 538
>sp|P35616|NFL_XENLA NEUROFILAMENT TRIPLET L PROTEIN (NEUROFILAMENT LIGHT POLYPEPTIDE)
(NF-L)
gb|AAA83018.1| (M86654) neurofilament protein [Xenopus laevis]
Length = 544
Score = 33.2 bits (74), Expect = 4.5
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +1
Query: 424 PRAWKESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQA----- 588
P +E + G+G E+G +A E E G Q E+G ++A
Sbjct: 463 PEEEEEEAAEEEGEGGEEAEEEGEEGEEAKEEEAEEEGGQEKEEEGEEGEGEAEAEGDGE 522
Query: 589 -EQESRGARAGQESRE 633
E ES+G A +E E
Sbjct: 523 EEGESKGDEAAEEESE 538
>pir||T25711 hypothetical protein F19F10.7 - Caenorhabditis elegans
gb|AAB52285.1| (U97005) F19F10.7 gene product [Caenorhabditis elegans]
Length = 183
Score = 33.2 bits (74), Expect = 4.5
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +2
Query: 89 HNNSSTTTWQALKSSKSYYIHSE------AYYVVINNEQQGKILCSMMHLQKNGKDT 241
H + STTT Q K + I E + VIN+E++ KILC+ + Q +G +T
Sbjct: 3 HPDPSTTTRQKQCPDKRFTIFDENWCFLIVFNSVINSEEKAKILCNNSNAQLSGPET 59
>ref|NP_040275.1| ORF 73; ECLF1
sp|Q01042|IE68_HSVSA IMMEDIATE-EARLY PROTEIN
pir||EDBEQ3 immediate-early protein - saimiriine herpesvirus 1 (strain 11)
emb|CAA45696.1| (X64346) ORF 73~ECLF1 [Saimiriine herpesvirus 2]
gb|AAB21116.1| (S76368) ORF 5' of ECRF3 [herpesvirus saimiri HVS, host-squirrel
monkey, Peptide, 407 aa] [Saimiriine herpesvirus 2]
gb|AAA46149.1| (M86409) first methionine codon in the ECLF1 ORF [Saimiriine
herpesvirus 2]
Length = 407
Score = 32.8 bits (73), Expect = 5.8
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 469 ARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE*GIQA 648
A E + + +A AE+E+ +A A+E+ +A +AE+E+ E E +A
Sbjct: 138 AEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAEEAEEAEEAEEA 197
Query: 649 SRGAQE 666
A+E
Sbjct: 198 EEEAEE 203
>prf||1804350B ECLF2 upstream ORF [Saimiriine herpesvirus 1]
Length = 407
Score = 32.8 bits (73), Expect = 5.8
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 469 ARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE*GIQA 648
A E + + +A AE+E+ +A A+E+ +A +AE+E+ E E +A
Sbjct: 138 AEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAEEAEEAEEAEEA 197
Query: 649 SRGAQE 666
A+E
Sbjct: 198 EEEAEE 203
>gb|AAF23506.1|AF216868_1 (AF216868) glutenin, high molecular weight subunit type x precursor
[Triticum aestivum]
Length = 766
Score = 32.8 bits (73), Expect = 5.8
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +1
Query: 427 RAWKESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRG 606
+A + G Q+GQG + E+G +QG + +Q +G Q +G + G + ++Q +G
Sbjct: 145 QAQQPGHGQQSGQGQQPEKG--QQGYYPTTPQQPGQGQQPGQG--QPGYYLTSSQQPGQG 200
Query: 607 ARAGQ 621
+ GQ
Sbjct: 201 QQPGQ 205
>gb|AAF89661.1|AF168782_1 (AF168782) acinusL protein [Mus musculus]
Length = 1338
Score = 32.8 bits (73), Expect = 5.8
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 478 ERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE 633
E+G E+G + +R+++E+R + R QE+ TQ QE ++ Q E
Sbjct: 334 EKGELEKGGRVTRSQEEARRSHLARQQQEKETQIVSLPQEENEVKSSQSLEE 385
>gb|AAF96084.1| (AE004357) conserved hypothetical protein [Vibrio cholerae]
Length = 646
Score = 32.8 bits (73), Expect = 5.8
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 463 QGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAGQESRE 633
Q + ++ Q+Q Q + +Q+ + Q + Q+Q Q Q +Q+S +GQE++E
Sbjct: 446 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQDSSSGASGQEAQE 502
>pir||I53641 mucin - human (fragment)
gb|AAC41774.1| (L46721) mucin [Homo sapiens]
Length = 164
Score = 32.8 bits (73), Expect = 5.8
Identities = 20/87 (22%), Positives = 30/87 (33%), Gaps = 2/87 (2%)
Frame = -1
Query: 958 SVTTKTYPVSTTVCAVTEEHPSKPTGY--APPNXXXXXXXXXXXXXXXXXXTECGPEVKD 785
+ +T + P ++T A T S PT + P CGP
Sbjct: 68 TTSTPSAPTTSTTLAPTTSTTSAPTTSTTSTPTSSTTSTPQTSTTSASTTSITCGPGTTP 127
Query: 784 CPYGSVKTETVPCTTVYATGTKEIPSYPT 698
P + T + P T+ + T S PT
Sbjct: 128 SPVPTTSTTSAPTTSTTSAATTSTISAPT 156
>gb|AAC34964.1| (AF023853) ElpB2 [Borrelia burgdorferi]
gb|AAF29801.1|AF169008_28 (AF169008) ORF29/ElpB2 [Borrelia burgdorferi]
Length = 406
Score = 32.5 bits (72), Expect = 7.6
Identities = 26/97 (26%), Positives = 45/97 (45%), Gaps = 2/97 (2%)
Frame = +1
Query: 439 ESRGAQAGQGARVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESRGARAG 618
ES+G + + E+ E+G + E++ +G + Q Q E+ ++ A+A
Sbjct: 119 ESKGEEEKVEGKKEKQDSEKGKVEEKKEKQENAEGNTKGKEVIEQQKKQQEETAKKAKAQ 178
Query: 619 QE--SRE*GIQASRGAQEWGAQACRE*QR*GKKESPWYR 729
+E RE IQ + Q+ A+ E QR K+E R
Sbjct: 179 KEKREREQKIQQKQEEQQRRAKEEEEQQRRAKEEEEQQR 217
>pir||A35938 profilaggrin - human (fragments)
Length = 2248
Score = 32.5 bits (72), Expect = 7.6
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 436 KESRGAQAGQGA----RVERGAQEQGTQASRAEQESRGAQAWRGAQEQGTQASQAEQESR 603
+ SR +QAGQG R R +Q S ++ S ++ W G+ + + S EQ
Sbjct: 1701 ESSRHSQAGQGQSAGPRTSRNQGSSVSQDSDSQGHSEDSERWSGSASRNHRGSAQEQSRD 1760
Query: 604 GAR 612
G+R
Sbjct: 1761 GSR 1763
>pir||A26049 cAMP receptor protein - Salmonella typhimurium
gb|AAA62414.1| (M13770) cyclic AMP receptor protein [Salmonella typhimurium]
Length = 210
Score = 32.5 bits (72), Expect = 7.6
Identities = 17/58 (29%), Positives = 32/58 (54%)
Frame = +2
Query: 44 MEWYL**TRQCYIQIHNNSSTTTWQALKSSKSYYIHSEAYYVVINNEQQGKILCSMMH 217
+EW+L C+I + + ST Q K+ SYYI + V+I +E+ +++ S ++
Sbjct: 12 LEWFL---SHCHIHKYPSKSTLIHQGEKAETSYYIVKGSVAVLIKDEEGKEMILSYLN 66
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205874372
Number of Sequences: 565281
Number of extensions: 3764363
Number of successful extensions: 17152
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 16976
Number of HSP's gapped (non-prelim): 149
length of query: 331
length of database: 177,575,912
effective HSP length: 54
effective length of query: 276
effective length of database: 147,050,738
effective search space: 40586003688
effective search space used: 40586003688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)