Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA36220.1| (AB021703) fr [Neurospora crassa] 146 3e-34
emb|CAA57411.1| (X81813) CDC1 [Saccharomyces cerevisiae] 44 0.003
ref|NP_010468.1| involved in ion homeostasis; Cdc1p >gi|170... 44 0.003
pir||T38990 cell division control protein 1 homolog - fissi... 43 0.005
dbj|BAA74831.1| (AB021139) Pax19 related gene [Halocynthia ... 34 2.5
dbj|BAA74870.1| (AB020654) KIAA0847 protein [Homo sapiens] 34 3.2
dbj|BAA74833.1| (AB021141) Pax19 related gene [Halocynthia ... 33 4.2
dbj|BAA74832.1| (AB021140) Pax19 related gene [Halocynthia ... 33 4.2
dbj|BAA74835.1| (AB021143) Pax19 related gene [Halocynthia ... 33 4.2
dbj|BAA74830.1| (AB021138) Pax19 related gene [Halocynthia ... 33 4.2
dbj|BAA74834.1| (AB021142) Pax19 related gene [Halocynthia ... 33 4.2
gb|AAC44057.1| (U51197) unknown [Sphingomonas sp. S88] 33 5.5
gb|AAB33891.1| (S75583) glial cell line-derived neurotrophi... 33 5.5
ref|NP_056816.1| early protein >gi|3915238|sp|Q89420|VE2_CO... 33 5.5
emb|CAB92370.1| (AL356612) putative membrane protein [Strep... 32 9.5
ref|NP_062012.1| glial cell line derived neutrophic factor ... 32 9.5
sp|P48540|GDNF_MOUSE GLIAL CELL LINE-DERIVED NEUROTROPHIC F... 32 9.5
ref|NP_034405.1| glial cell line derived neurotrophic facto... 32 9.5
>dbj|BAA36220.1| (AB021703) fr [Neurospora crassa]
Length = 756
Score = 146 bits (365), Expect = 3e-34
Identities = 96/223 (43%), Positives = 135/223 (60%), Gaps = 56/223 (25%)
Frame = -2
Query: 932 NVREITVKSMSMAMGVPTPGFLMVSMFNPVDS-KGKPLPGSPEQTIQTHMCLLPNQIHTY 756
+VREI+VKS+SMAMGVPTPGF MVS++NP+D GKPL G + T+QTH+CLLPNQI TY
Sbjct: 478 SVREISVKSISMAMGVPTPGFQMVSLYNPLDPVTGKPLAGDGQPTMQTHLCLLPNQISTY 537
Query: 755 MEYIVFGXXXXXXXXXXXXXXXXXXLTPFALEPEKHSSS------SVLPVYKDKMDPPEA 594
+ Y+ G L FAL+ + SS S+LPV+K K + +
Sbjct: 538 LHYVGLGIFCIILLAIRAFLVPVLNLPRFALDSDSDSSHHHPSGISILPVFKAKQEDYDE 597
Query: 593 STYRNTTSSGTSAHHFPSRAAPRHGRSASPVQTSGRWQARRGGRNDKR------------ 450
+ + S +S + + R R+AS +S + R G ++++
Sbjct: 598 YSLPSAGYSASSKYGSSGTSGERRSRTASVSSSSLKSNNLRNGHHNEKSGGSSGRSRKSS 657
Query: 449 ------------WGWGSAGG-------PRIHL----DDNLYTTGV--------------R 381
W WG G PRI + +++LY G
Sbjct: 658 VYSNSNKSVKGGWSWGGKHGHHHHYHQPRIEIPGENEEDLYYGGAFTTSSSSSKWRARQS 717
Query: 380 DKRIGGKKALGVIGRELWTTAWRVVWTVLLFFAYLAWKG 264
K+ K A+GV+ ELWTT WRV W V++ F +LAWKG
Sbjct: 718 RKKQKPKTAMGVVVTELWTTVWRVAWMVVVVFGWLAWKG 756
>emb|CAA57411.1| (X81813) CDC1 [Saccharomyces cerevisiae]
Length = 491
Score = 43.8 bits (101), Expect = 0.003
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -2
Query: 935 ENVREITVKSMSMAMGVPTPGFLMVSMFNPVDSKGKPLPGS-PEQTIQTHMCLLPNQIHT 759
+N +EITVKS +M MG+ P ++S++NP D G +T QT +C +P+
Sbjct: 332 KNAQEITVKSCAMNMGISRPAIQLLSLYNPSDLTMVNAGGEYASKTYQTELCYMPDPYKA 391
Query: 758 YMEYI 744
Y+
Sbjct: 392 IRMYL 396
>ref|NP_010468.1| involved in ion homeostasis; Cdc1p
sp|P40986|CC1_YEAST CELL DIVISION CONTROL PROTEIN 1
pir||S49779 CDC1 protein - yeast (Saccharomyces cerevisiae)
gb|AAB08444.1| (U15970) CDC1; similar to S. cerevisiae CDC1 gene product, encoded
by GenBank Accession Number X81813 [Saccharomyces
cerevisiae]
emb|CAA86689.1| (Z46727) Cdc1p [Saccharomyces cerevisiae]
Length = 491
Score = 43.8 bits (101), Expect = 0.003
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -2
Query: 935 ENVREITVKSMSMAMGVPTPGFLMVSMFNPVDSKGKPLPGS-PEQTIQTHMCLLPNQIHT 759
+N +EITVKS +M MG+ P ++S++NP D G +T QT +C +P+
Sbjct: 332 KNAQEITVKSCAMNMGISRPAIQLLSLYNPSDLTMVNAGGEYASKTYQTELCYMPDPYKA 391
Query: 758 YMEYI 744
Y+
Sbjct: 392 IRMYL 396
>pir||T38990 cell division control protein 1 homolog - fission yeast
(Schizosaccharomyces pombe)
emb|CAB52734.1| (AL109832) similar to S. cerevisiae cell division control protein
1, CC1_YEAST [Schizosaccharomyces pombe]
Length = 422
Score = 43.0 bits (99), Expect = 0.005
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = -2
Query: 923 EITVKSMSMAMGVPTPGFLMVSMFNPVDSKGKPLPGSPEQTIQTHMCLLPNQIHTYMEY 747
E VK+ SM G+ PG+ ++S+ P D+ + + QT +C+LPNQI Y+ Y
Sbjct: 292 EYNVKAFSMTSGILYPGYQLLSLNYPYDNP----KADQKSSYQTKLCILPNQIQIYVWY 346
>dbj|BAA74831.1| (AB021139) Pax19 related gene [Halocynthia roretzi]
Length = 475
Score = 34.0 bits (76), Expect = 2.5
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 646 HPQAFCPYTRTRWTLPKLQPTATRHPPALQHTTSPRAQHRATGGAHPLYRHQADGRLG 473
HP +C +T +QP ++ PP T+P RA +PLY H LG
Sbjct: 175 HPHPYCTSPAAMYTPYMMQPAGSKQPPMATVPTAPGC-FRAPAIPYPLYSHSMSEILG 231
>dbj|BAA74870.1| (AB020654) KIAA0847 protein [Homo sapiens]
Length = 645
Score = 33.6 bits (75), Expect = 3.2
Identities = 22/63 (34%), Positives = 31/63 (48%), Gaps = 3/63 (4%)
Frame = -2
Query: 659 PEKHSSSSVLPVYKDKMDPPEASTYRNTTSSGTSA---HHFPSRAAPRHGRSASPVQTSG 489
P+ S V+P P +S R ++SS + A HH ++P GRS SP SG
Sbjct: 538 PKTPPKSPVVPRRSPSASPRSSSLPRTSSSSPSRAGRPHHDQRSSSPHLGRSKSPPSHSG 597
Query: 488 RWQARR 471
+RR
Sbjct: 598 SSSSRR 603
>dbj|BAA74833.1| (AB021141) Pax19 related gene [Halocynthia roretzi]
Length = 502
Score = 33.2 bits (74), Expect = 4.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 646 HPQAFCPYTRTRWTLPKLQPTATRHPPALQHTTSPRAQHRATGGAHPLYRHQADGRLG 473
HP +C +T +QP ++ PP T+P RA +PLY H LG
Sbjct: 212 HPHPYCTSPAAMYTPYMMQPAGSKQPPMPTVPTAPGC-FRAPAIPYPLYSHSMSEILG 268
>dbj|BAA74832.1| (AB021140) Pax19 related gene [Halocynthia roretzi]
Length = 503
Score = 33.2 bits (74), Expect = 4.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 646 HPQAFCPYTRTRWTLPKLQPTATRHPPALQHTTSPRAQHRATGGAHPLYRHQADGRLG 473
HP +C +T +QP ++ PP T+P RA +PLY H LG
Sbjct: 212 HPHPYCTSPAAMYTPYMMQPAGSKQPPMPTVPTAPGC-FRAPAIPYPLYSHSMSEILG 268
>dbj|BAA74835.1| (AB021143) Pax19 related gene [Halocynthia roretzi]
Length = 503
Score = 33.2 bits (74), Expect = 4.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 646 HPQAFCPYTRTRWTLPKLQPTATRHPPALQHTTSPRAQHRATGGAHPLYRHQADGRLG 473
HP +C +T +QP ++ PP T+P RA +PLY H LG
Sbjct: 212 HPHPYCTSPAAMYTPYMMQPAGSKQPPMPTVPTAPGC-FRAPAIPYPLYSHSMSEILG 268
>dbj|BAA74830.1| (AB021138) Pax19 related gene [Halocynthia roretzi]
Length = 512
Score = 33.2 bits (74), Expect = 4.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 646 HPQAFCPYTRTRWTLPKLQPTATRHPPALQHTTSPRAQHRATGGAHPLYRHQADGRLG 473
HP +C +T +QP ++ PP T+P RA +PLY H LG
Sbjct: 212 HPHPYCTSPAAMYTPYMMQPAGSKQPPMPTVPTAPGC-FRAPAIPYPLYSHSMSEILG 268
>dbj|BAA74834.1| (AB021142) Pax19 related gene [Halocynthia roretzi]
Length = 374
Score = 33.2 bits (74), Expect = 4.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 646 HPQAFCPYTRTRWTLPKLQPTATRHPPALQHTTSPRAQHRATGGAHPLYRHQADGRLG 473
HP +C +T +QP ++ PP T+P RA +PLY H LG
Sbjct: 212 HPHPYCTSPAAMYTPYMMQPAGSKQPPMPTVPTAPGC-FRAPAIPYPLYSHSMSEILG 268
>gb|AAC44057.1| (U51197) unknown [Sphingomonas sp. S88]
Length = 670
Score = 32.8 bits (73), Expect = 5.5
Identities = 16/56 (28%), Positives = 27/56 (47%)
Frame = -1
Query: 321 GVACGLDGAVVFCISCMEGIDYTIPTEGSMCSDVLLYIVVLQYTYYVDRGGIYLLG 154
G++ DG +VF + G YT+ T G+ +D + + L Y + IY+ G
Sbjct: 461 GISLRADGELVFTVKNAAGQSYTVATSGAKMTDTATHKIALTYDSAKGKAIIYVDG 516
>gb|AAB33891.1| (S75583) glial cell line-derived neurotrophic factor GDNF633 [rats,
Schwann cells and skeletal muscle, Peptide Partial, 211
aa] [Rattus sp.]
Length = 211
Score = 32.8 bits (73), Expect = 5.5
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = -2
Query: 674 PFALEPEKHSSSSVLPVYKDKMDPPEASTYRNTTSSGTSAHHFPSRAAPRHGRSASPVQT 495
PFAL + + + D MD +A+ R +S A P R R +ASP +
Sbjct: 44 PFALTSDSNMPEDYPDQFDDVMDFIQATIKRLKSSPDKQAAALPRRKRNRQAAAASPENS 103
Query: 494 SGRWQARRGGRNDKR 450
G+ RRG R R
Sbjct: 104 RGK--GRRGQRGKNR 116
>ref|NP_056816.1| early protein
sp|Q89420|VE2_COPV REGULATORY PROTEIN E2
gb|AAA61747.1| (L22695) regulatory protein [Canine oral papillomavirus]
dbj|BAA09501.1| (D55633) early protein [Canine oral papillomavirus]
Length = 385
Score = 32.8 bits (73), Expect = 5.5
Identities = 22/57 (38%), Positives = 31/57 (53%), Gaps = 9/57 (15%)
Frame = -2
Query: 599 EASTYRNTTSSGTSAHHFPSRAA---------PRHGRSASPVQTSGRWQARRGGRNDKRW 447
+ +T T+++GTS P +A PR G S P + S R+ R GGR R
Sbjct: 190 QPTTIPTTSAAGTSGPELPGHSASGSGACSLTPRKGPSRRPGRRSSRFPRRSGGRG--RL 247
Query: 446 GWGSAG 429
G G +G
Sbjct: 248 GRGGSG 253
>emb|CAB92370.1| (AL356612) putative membrane protein [Streptomyces coelicolor
A3(2)]
Length = 687
Score = 32.1 bits (71), Expect = 9.5
Identities = 21/49 (42%), Positives = 29/49 (58%), Gaps = 11/49 (22%)
Frame = -2
Query: 530 PRHGRSASPVQTSGRWQARRGGR-----NDKRWGWGSAGGPRIHLDD------NLYTTGV 384
PR GR A+PV+ GR AR GGR +++ G G +H D +LY G+
Sbjct: 50 PRAGRDAAPVEDGGRGLARDGGREGPAEDERPAGTGVPAQRELHEDSVLPPPRDLYDDGI 109
>ref|NP_062012.1| glial cell line derived neutrophic factor
sp|Q07731|GDNF_RAT GLIAL CELL LINE-DERIVED NEUROTROPHIC FACTOR PRECURSOR
pir||A37499 glial cell line-derived neurotrophic factor precursor - rat
gb|AAA67909.1| (L15305) neurotrophic factor [Rattus norvegicus]
Length = 211
Score = 32.1 bits (71), Expect = 9.5
Identities = 23/75 (30%), Positives = 31/75 (40%)
Frame = -2
Query: 674 PFALEPEKHSSSSVLPVYKDKMDPPEASTYRNTTSSGTSAHHFPSRAAPRHGRSASPVQT 495
PFAL + + + D MD +A+ R S A P R R +ASP +
Sbjct: 44 PFALTSDSNMPEDYPDQFDDVMDFIQATIKRLKRSPDKQAAALPRRERNRQAAAASPENS 103
Query: 494 SGRWQARRGGRNDKR 450
G+ RRG R R
Sbjct: 104 RGK--GRRGQRGKNR 116
>sp|P48540|GDNF_MOUSE GLIAL CELL LINE-DERIVED NEUROTROPHIC FACTOR PRECURSOR
pir||I49686 glial cell line-derived neuotrophic factor - mouse
dbj|BAA08660.1| (D49921) GDNF [Mus musculus]
gb|AAB52953.1| (U36449) GDNF [Mus musculus]
dbj|BAB12221.1| (D88352) neurotrophic factor [Mus musculus]
Length = 211
Score = 32.1 bits (71), Expect = 9.5
Identities = 23/75 (30%), Positives = 31/75 (40%)
Frame = -2
Query: 674 PFALEPEKHSSSSVLPVYKDKMDPPEASTYRNTTSSGTSAHHFPSRAAPRHGRSASPVQT 495
PFAL + + + D MD +A+ R S A P R R +ASP +
Sbjct: 44 PFALTSDSNMPEDYPDQFDDVMDFIQATIKRLKRSPDKQAAALPRRERNRQAAAASPENS 103
Query: 494 SGRWQARRGGRNDKR 450
G+ RRG R R
Sbjct: 104 RGK--GRRGQRGKNR 116
>ref|NP_034405.1| glial cell line derived neurotrophic factor
gb|AAB18672.1| (U37459) glia-derived neurotrophic growth factor [Mus musculus]
dbj|BAA13566.1| (D88264) neurotrophic factor [Mus musculus]
dbj|BAA13591.1| (D88352) neurotrophic factor [Mus musculus]
Length = 240
Score = 32.1 bits (71), Expect = 9.5
Identities = 23/75 (30%), Positives = 31/75 (40%)
Frame = -2
Query: 674 PFALEPEKHSSSSVLPVYKDKMDPPEASTYRNTTSSGTSAHHFPSRAAPRHGRSASPVQT 495
PFAL + + + D MD +A+ R S A P R R +ASP +
Sbjct: 73 PFALTSDSNMPEDYPDQFDDVMDFIQATIKRLKRSPDKQAAALPRRERNRQAAAASPENS 132
Query: 494 SGRWQARRGGRNDKR 450
G+ RRG R R
Sbjct: 133 RGK--GRRGQRGKNR 145
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342329384
Number of Sequences: 565281
Number of extensions: 8112341
Number of successful extensions: 28607
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 28598
Number of HSP's gapped (non-prelim): 19
length of query: 317
length of database: 177,575,912
effective HSP length: 54
effective length of query: 262
effective length of database: 147,050,738
effective search space: 38527293356
effective search space used: 38527293356
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)