Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA86524.1| (AB033036) KIAA1210 protein [Homo sapiens] 33 2.8
gb|AAF50191.1| (AE003550) CG14165 gene product [Drosophila ... 32 3.6
ref|NP_057417.1| RNA binding protein >gi|6649242|gb|AAF2143... 32 4.8
gb|AAD38646.1|AF145671_1 (AF145671) BcDNA.GH11973 [Drosophi... 32 6.2
sp|P45525|YCJF_ECOLI HYPOTHETICAL 39.4 KDA PROTEIN IN PSPE-... 32 6.2
emb|CAB82345.1| (AL162004) hypothetical protein [Homo sapiens] 32 6.2
gb|AAF45932.1| (AE003430) CG12691 gene product [Drosophila ... 32 6.2
ref|NP_005145.1| ubiquitin specific protease 8 >gi|731046|s... 32 6.2
gb|AAF51718.1| (AE003594) BcDNA:GH11973 gene product [alt 1... 32 6.2
ref|NP_014639.1| DNA binding protein involved in transcript... 31 8.2
emb|CAB61059.1| (AL132948) predicted using Genefinder; prel... 31 8.2
sp|P34099|KAPC_DICDI CAMP-DEPENDENT PROTEIN KINASE CATALYTI... 31 8.2
gb|AAB20716.1| serine/threonine protein kinase [Dictyosteli... 31 8.2
gb|AAF49857.1| (AE003539) CG11259 gene product [Drosophila ... 31 8.2
gb|AAA34839.1| (M36822) SIN3 open reading frame [Saccharomy... 31 8.2
sp|Q03372|HMSH_DROME MUSCLE SEGMENTATION HOMEOBOX >gi|10986... 31 8.2
>dbj|BAA86524.1| (AB033036) KIAA1210 protein [Homo sapiens]
Length = 1115
Score = 32.8 bits (73), Expect = 2.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 124 LHQNSVSNPRNLATKHRTSLSPTPTKSLNLPLQNPRFSQS 243
+ Q S+P+++A + S+ P P K L PL NP+ Q+
Sbjct: 365 VEQEVSSSPKSMAVEESISMKPLPPKLLCQPLMNPKVQQN 404
>gb|AAF50191.1| (AE003550) CG14165 gene product [Drosophila melanogaster]
Length = 660
Score = 32.5 bits (72), Expect = 3.6
Identities = 26/109 (23%), Positives = 48/109 (43%), Gaps = 3/109 (2%)
Frame = +1
Query: 166 KHRTSLSPTPTKSLNLPLQNPRFSQSETHQEANP---QSHTSINPRDISPVARIP*LDIP 336
++ S+ P P + L L PR Q +Q P H S+NP+ + P IP
Sbjct: 43 RYAVSIQPQPQQQLQLQQPRPRQYQGP-YQLPLPLPAPQHRSVNPQQQQQQHQQPYQVIP 101
Query: 337 VNPRSQLAHGEQVSHVRHEKHKQHNPPDSQVWRRPQHERLIEREEEVHISEL 492
++ E + HE+ +Q Q ++ QH+ +++++ H +L
Sbjct: 102 EEQFLKILEEELQARAYHEQLRQQQQHQQQQQQQQQHQ---QQQQQQHHKQL 150
>ref|NP_057417.1| RNA binding protein
gb|AAF21439.1|AF201422_1 (AF201422) splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 32.1 bits (71), Expect = 4.8
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Frame = +3
Query: 114 SPTLAPKFGIQPEKPRYQTP-------NFAIPNTDEXXXXXXXXXXXXXXRNPSRS*PSE 272
SPT APK ++ +P TP + + ++ + S S S
Sbjct: 2162 SPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2221
Query: 273 SYQHKPKGYFPSRSHSMT*HPSKSPFPARSWRTSVPRPPREAQTAQ 410
S FP ++ + P A WR VP+PP + Q
Sbjct: 2222 SSSSSSSFPFPCKAWPSGLAQTCKPQEATPWRAEVPQPPEANRLPQ 2267
>gb|AAD38646.1|AF145671_1 (AF145671) BcDNA.GH11973 [Drosophila melanogaster]
gb|AAF51717.1| (AE003594) BcDNA:GH11973 gene product [alt 2] [Drosophila
melanogaster]
Length = 800
Score = 31.7 bits (70), Expect = 6.2
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Frame = +1
Query: 109 YNLQLLHQNSVSNPRNLATKHRTSLSPTPTKSLNLPLQNPRFS---------QSETHQEA 261
Y+ +L Q R L + R L+ + L+ R Q H E
Sbjct: 323 YDRKLQRQRERERRRQLRRQERQKLAREQKRERQRRLKEERQRLQREEQQRRQRLHHDEP 382
Query: 262 NPQSHTSINPRDISPVARIP*LDIPVN---PRSQLAHGEQVSHVRHEKHKQHNPPDSQVW 432
PQ + + P+ I + + D+ N Q EQ +R E+ KQ + + +
Sbjct: 383 KPQVNPQVKPQVIDELRQRSGEDLDKNQTDEHEQKLRNEQEKKLREEQQKQRDEQEQK-- 440
Query: 433 RRPQHERLIEREEE--VHISELRHGNRCSL 516
R + +RL + EE+ H EL+ L
Sbjct: 441 DREEQDRLKQEEEQARTHQKELKENQEQQL 470
>sp|P45525|YCJF_ECOLI HYPOTHETICAL 39.4 KDA PROTEIN IN PSPE-TYRR INTERGENIC REGION
pir||E64881 membrane protein ycjF - Escherichia coli
dbj|BAA14903.1| (D90770) ORF_ID:o260#4; similar to [SwissProt Accession Number
P43931] [Escherichia coli]
dbj|BAA14914.1| (D90771) ORF_ID:o260#4~similar to [SwissProt Accession Number
P43931] [Escherichia coli]
gb|AAC74404.1| (AE000230) orf, hypothetical protein [Escherichia coli]
Length = 353
Score = 31.7 bits (70), Expect = 6.2
Identities = 14/46 (30%), Positives = 23/46 (49%)
Frame = -2
Query: 372 LFSMSELGTGIYWDVKSWNASDWGNIPWVYAGMTLRVSFLMGFGLG 235
LF S +G G+ W + +W DW + AG + ++G G+G
Sbjct: 77 LFGASVVGQGVQWTMNAWQTQDWVALGGCAAG-----ALIIGAGVG 117
>emb|CAB82345.1| (AL162004) hypothetical protein [Homo sapiens]
Length = 1299
Score = 31.7 bits (70), Expect = 6.2
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +1
Query: 136 SVSNPRNLATKHRTSLSPTPTKSLNLPLQNPRFSQSETHQEA-NPQSHTSINPRDISPVA 312
+ S P A+ + +PTP + N P +Q++TH+ A NP TS + + P
Sbjct: 446 TASVPLAPASASAPAPAPTPVSAPNPAPPAPAQTQAQTHKPAQNPLQTTSQSSKQPPPSI 505
Query: 313 RIP*LDIPVNPRSQLAHGEQVSHVRHEKHKQHNPPDSQVW 432
R+P P N +A G+ + + + H +++W
Sbjct: 506 RLPSAQTP-NGTDYVASGKSI-----QTPQSHGTLTAELW 539
>gb|AAF45932.1| (AE003430) CG12691 gene product [Drosophila melanogaster]
Length = 150
Score = 31.7 bits (70), Expect = 6.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 376 SHVRHEKHKQHNPPDSQVWRRPQHERLIER 465
S + ++H+ HN P S + P+H RL ER
Sbjct: 82 SRLDPDEHRDHNEPSSSITAAPEHSRLQER 111
>ref|NP_005145.1| ubiquitin specific protease 8
sp|P40818|UBP8_HUMAN UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 (UBIQUITIN THIOLESTERASE 8)
(UBIQUITIN-SPECIFIC PROCESSING PROTEASE 8)
(DEUBIQUITINATING ENZYME 8) (KIAA0055)
dbj|BAA06225.1| (D29956) This gene is similar to tre oncogene(X63547). [Homo
sapiens]
Length = 1118
Score = 31.7 bits (70), Expect = 6.2
Identities = 27/103 (26%), Positives = 50/103 (48%)
Frame = +1
Query: 166 KHRTSLSPTPTKSLNLPLQNPRFSQSETHQEANPQSHTSINPRDISPVARIP*LDIPVNP 345
K+ + T ++ LP ++ S+S H++ +PQS I R PV P L +
Sbjct: 402 KNVPQIDRTKKPAVKLPEEHRIKSESTNHEQQSPQSGKVIPDRSTKPVVFSPTLMLTDEE 461
Query: 346 RSQLAHGEQVSHVRHEKHKQHNPPDSQVWRRPQHERLIEREEE 474
++++ H E + + EK+KQ + + Q E+L + E+E
Sbjct: 462 KARI-HAE--TALLMEKNKQEKELRER-QQEEQKEKLRKEEQE 500
>gb|AAF51718.1| (AE003594) BcDNA:GH11973 gene product [alt 1] [Drosophila
melanogaster]
Length = 658
Score = 31.7 bits (70), Expect = 6.2
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Frame = +1
Query: 109 YNLQLLHQNSVSNPRNLATKHRTSLSPTPTKSLNLPLQNPRFS---------QSETHQEA 261
Y+ +L Q R L + R L+ + L+ R Q H E
Sbjct: 181 YDRKLQRQRERERRRQLRRQERQKLAREQKRERQRRLKEERQRLQREEQQRRQRLHHDEP 240
Query: 262 NPQSHTSINPRDISPVARIP*LDIPVN---PRSQLAHGEQVSHVRHEKHKQHNPPDSQVW 432
PQ + + P+ I + + D+ N Q EQ +R E+ KQ + + +
Sbjct: 241 KPQVNPQVKPQVIDELRQRSGEDLDKNQTDEHEQKLRNEQEKKLREEQQKQRDEQEQK-- 298
Query: 433 RRPQHERLIEREEE--VHISELRHGNRCSL 516
R + +RL + EE+ H EL+ L
Sbjct: 299 DREEQDRLKQEEEQARTHQKELKENQEQQL 328
>ref|NP_014639.1| DNA binding protein involved in transcriptional regulation; Sin3p
sp|P22579|SIN3_YEAST PAIRED AMPHIPATHIC HELIX PROTEIN
pir||RGBYS3 regulatory protein SIN3 - yeast (Saccharomyces cerevisiae)
emb|CAA99003.1| (Z74746) ORF YOL004w [Saccharomyces cerevisiae]
Length = 1536
Score = 31.3 bits (69), Expect = 8.2
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 208 NLPLQNPRFSQSETHQEANPQSHTSINPRDISPVARIP*LDIPVNPRSQL 357
N PL + R S +E + ++ Q H +P+ ISP+A DIPV P L
Sbjct: 593 NPPLSDLRTSLTEQYAPSSIQ-HQQQHPQSISPIANTQYGDIPVRPEIDL 641
>emb|CAB61059.1| (AL132948) predicted using Genefinder; preliminary prediction
[Caenorhabditis elegans]
Length = 728
Score = 31.3 bits (69), Expect = 8.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 355 LAHGEQVSHVRHEKHKQHNPPDSQVWRRPQHERLIEREEEV 477
LA EQ V H H H + +VW HE++IE EE +
Sbjct: 684 LARMEQRFGVEHHHHIVHQEQEEEVW---DHEQIIEEEEVI 721
>sp|P34099|KAPC_DICDI CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT
pir||JQ1150 protein kinase (EC 2.7.1.37) cAMP-dependent, catalytic chain -
slime mold (Dictyostelium discoideum)
Length = 648
Score = 31.3 bits (69), Expect = 8.2
Identities = 23/87 (26%), Positives = 35/87 (39%)
Frame = +1
Query: 115 LQLLHQNSVSNPRNLATKHRTSLSPTPTKSLNLPLQNPRFSQSETHQEANPQSHTSINPR 294
L L H +S P N+ S PT+ P+ P Q ++ Q+ Q I P
Sbjct: 257 LSLQHAHSSYTPSNVLHSPTHFQSSLPTRLDTNPITTPIRQQQQSQQQLQQQQLQQIPPP 316
Query: 295 DISPVARIP*LDIPVNPRSQLAHGEQV 375
++ P PVN R +L +Q+
Sbjct: 317 TVNSFFLPP----PVNARERLKEFKQI 339
>gb|AAB20716.1| serine/threonine protein kinase [Dictyostelium, Peptide, 648 aa]
Length = 648
Score = 31.3 bits (69), Expect = 8.2
Identities = 23/87 (26%), Positives = 35/87 (39%)
Frame = +1
Query: 115 LQLLHQNSVSNPRNLATKHRTSLSPTPTKSLNLPLQNPRFSQSETHQEANPQSHTSINPR 294
L L H +S P N+ S PT+ P+ P Q ++ Q+ Q I P
Sbjct: 257 LSLQHAHSSYTPSNVLHSPTHFQSSLPTRLDTNPITTPIRQQQQSQQQLQQQQLQQIPPP 316
Query: 295 DISPVARIP*LDIPVNPRSQLAHGEQV 375
++ P PVN R +L +Q+
Sbjct: 317 TVNSFFLPP----PVNARERLKEFKQI 339
>gb|AAF49857.1| (AE003539) CG11259 gene product [Drosophila melanogaster]
Length = 996
Score = 31.3 bits (69), Expect = 8.2
Identities = 16/48 (33%), Positives = 24/48 (49%)
Frame = +1
Query: 133 NSVSNPRNLATKHRTSLSPTPTKSLNLPLQNPRFSQSETHQEANPQSH 276
+S+SNP + SPT + +P+ PR S S+T A P +H
Sbjct: 500 SSISNP-----SEKPHSSPTLSHGKKMPMPTPRISISKTQTPAKPMTH 542
>gb|AAA34839.1| (M36822) SIN3 open reading frame [Saccharomyces cerevisiae]
Length = 1538
Score = 31.3 bits (69), Expect = 8.2
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 208 NLPLQNPRFSQSETHQEANPQSHTSINPRDISPVARIP*LDIPVNPRSQL 357
N PL + R S +E + ++ Q H +P+ ISP+A DIPV P L
Sbjct: 595 NPPLSDLRTSLTEQYAPSSIQ-HQQQHPQSISPIANTQYGDIPVRPEIDL 643
>sp|Q03372|HMSH_DROME MUSCLE SEGMENTATION HOMEOBOX
gb|AAC47329.1| (U33319) MSH [Drosophila melanogaster]
gb|AAB62975.1| (AF009038) muscle segment homeobox [Drosophila melanogaster]
Length = 515
Score = 31.3 bits (69), Expect = 8.2
Identities = 26/85 (30%), Positives = 42/85 (48%), Gaps = 8/85 (9%)
Frame = +1
Query: 172 RTSLSPTPTKSLNLPLQNPRFSQSETHQEANPQSH------TSINPRDISP--VARIP*L 327
+T SPT S N P N + S ++ +N S+ TS N ++SP A + L
Sbjct: 16 QTMTSPTVPPSTNTPAGNLIITSSSSNSGSNSGSNMSSGNMTSSNLTNLSPSHPAGLNAL 75
Query: 328 DIPVNPRSQLAHGEQVSHVRHEKHKQHNPPDSQ 426
P +P + L +Q +H++H+Q Q
Sbjct: 76 ASPTSPSALLLAHQQHLLQQHQQHQQQQQQQQQ 108
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187937036
Number of Sequences: 565281
Number of extensions: 4085101
Number of successful extensions: 17232
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 17214
Number of HSP's gapped (non-prelim): 32
length of query: 183
length of database: 177,575,912
effective HSP length: 52
effective length of query: 130
effective length of database: 148,181,300
effective search space: 19263569000
effective search space used: 19263569000
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)