Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA12721.1| (D85079) homeobox [Strongylocentrotus purpu... 39 0.047
gb|AAD20910.2| (AC006234) putative LRR receptor protein kin... 39 0.081
pir||T07907 hydroxyproline-rich glycoprotein GAS28 precurso... 35 1.2
gb|AAG10390.1| (AY007501) enabled-like protein [Hirudo medi... 34 1.6
pir||T41547 hypothetical protein SPCC70.01 - fission yeast ... 34 1.6
pir||T41011 hypothetical protein SPCC1494.10 - fission yeas... 34 1.6
pir||T04652 hypothetical protein F10N7.260 - Arabidopsis th... 34 1.6
pir||T06336 proline-rich protein precursor - soybean >gi|35... 34 1.6
pir||T38547 probable cell division protein kinase - fission... 34 1.6
pir||S21323 probable endoglucanase - Ruminococcus flavefaci... 34 2.1
gb|AAC36357.1| (AF091342) neurofilament-M subunit [Bos taurus] 34 2.1
pir||T19765 hypothetical protein C36A4.5 - Caenorhabditis e... 34 2.7
pir||H72695 hypothetical protein APE0984 - Aeropyrum pernix... 33 3.5
gb|AAF22175.1|AF136381_1 (AF136381) c-Cbl-associated protei... 33 3.5
pir||S42674 adhesive protein - bifurcate mussel (fragments) 33 4.6
gb|AAG01391.1|AF199499_1 (AF199499) period 2 [Xenopus laevis] 33 4.6
dbj|BAA78424.1| (AB021264) polyprotein [Arabidopsis thaliana] 32 6.1
dbj|BAA97097.1| (AP002460) En/Spm transposon protein-like [... 32 6.1
pir||T30049 hypothetical protein K06C4.8 - Caenorhabditis e... 32 6.1
pir||S54265 glycoprotein gC - bovine herpesvirus 5 >gi|8049... 32 6.1
pir||T01397 LTR gag/pol polyprotein homolog T4I9.16 - Arabi... 32 6.1
pir||I58377 LTG19 - human >gi|436042|dbj|BAA03406.1| (D1453... 32 6.1
pir||T21338 hypothetical protein F25D7.4 - Caenorhabditis e... 32 6.1
ref|NP_010086.1| Component (p150) of COPII coat of secretor... 32 7.9
gb|AAA50367.1| (U15219) Web1p [Saccharomyces cerevisiae] 32 7.9
gb|AAB58418.1| (U37500) RNA polymerase II largest subunit [... 32 7.9
gb|AAD41978.1|AC006438_10 (AC006438) unknown protein [Arabi... 32 7.9
sp|P11414|RPB1_CRIGR DNA-DIRECTED RNA POLYMERASE II LARGEST... 32 7.9
ref|NP_056200.1| DKFZP586P1422 protein >gi|7512944|pir||T17... 32 7.9
gb|AAC41377.1| (AF036382) MLL [Takifugu rubripes] 32 7.9
pir||I38186 RNA polymerase II largest subunit - human >gi|8... 32 7.9
sp|P08775|RPB1_MOUSE DNA-DIRECTED RNA POLYMERASE II LARGEST... 32 7.9
dbj|BAA22376.1| (D87293) RNA polymerase II largest subunit ... 32 7.9
ref|NP_000928.1| polymerase (RNA) II (DNA directed) polypep... 32 7.9
ref|NP_033115.1| RNA polymerase II 1 >gi|90464|pir||A28490 ... 32 7.9
gb|AAF04257.1| (AF139114) subtilisin-like serine protease [... 32 7.9
pir||F75513 ABC transporter, ATP-binding protein, EF-3 fami... 32 7.9
sp|Q09729|YA4C_SCHPO HYPOTHETICAL 65.9 KD PROTEIN C31A2.12 ... 32 7.9
ref|NP_056526.1| glioma tumor suppressor candidate region g... 32 7.9
>dbj|BAA12721.1| (D85079) homeobox [Strongylocentrotus purpuratus]
Length = 405
Score = 39.5 bits (90), Expect = 0.047
Identities = 26/76 (34%), Positives = 38/76 (49%), Gaps = 7/76 (9%)
Frame = +3
Query: 279 RLMLLPHRECHLPIHHPLKSPARSALQAPTPTRLLTNDANHQTSRKPPSQPRQQ------ 440
++ L P R P HHP + PA A Q P +D +++T PPSQPR +
Sbjct: 23 KMRLSPDR----PSHHPARPPASLASQPLRPAHYQDDDDSYRTHTPPPSQPRTKGFSIES 78
Query: 441 -TTLFAKHRSLPKLARPTRALPS 506
+ KHR P+ + + PS
Sbjct: 79 ILSPTDKHRKSPRSPPMSPSSPS 101
>gb|AAD20910.2| (AC006234) putative LRR receptor protein kinase [Arabidopsis
thaliana]
Length = 743
Score = 38.7 bits (88), Expect = 0.081
Identities = 34/93 (36%), Positives = 41/93 (43%)
Frame = +2
Query: 182 FNQPSPKFYLSIPNFYIYASRTIKQNITIMASPPYATSPSGMSPTYPSPAQIPSKKRSSG 361
FN P P+ LSIPNF + N+TI SP T PS SP P PS S+G
Sbjct: 228 FNGPIPEKLLSIPNFIKGGNLF---NVTIAPSPSPETPPSPTSPKRPFFGP-PSPNASAG 283
Query: 362 ADANAPAHKRRKPSNLSQASVXXXXXNHPLRQT 460
+ AH R PS+ +HP R T
Sbjct: 284 ---HGQAHVRSPPSD-----------HHPSRPT 302
>pir||T07907 hydroxyproline-rich glycoprotein GAS28 precursor - Chlamydomonas
reinhardtii
gb|AAB69862.1| (AF015883) hydroxyproline-rich glycoprotein gas28p precursor
[Chlamydomonas reinhardtii]
Length = 446
Score = 34.8 bits (78), Expect = 1.2
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Frame = +2
Query: 233 YASRTIKQN-----ITIM--ASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKR 391
Y SR Q+ ++I+ A PP+ SPS SP PSP PS + P
Sbjct: 200 YTSRLFNQDRDCCPVSILGNAPPPHVPSPSPPSPPSPSPPPPPSPPPPPPPTPSPP---- 255
Query: 392 RKPSNLSQASVXXXXXNHPLRQTSFPPEARSPYPRSPF 505
P L A P PP A P PRS F
Sbjct: 256 --PPELPPAQPDAPARKRP------PPPASPPPPRSDF 285
>gb|AAG10390.1| (AY007501) enabled-like protein [Hirudo medicinalis]
Length = 509
Score = 34.4 bits (77), Expect = 1.6
Identities = 30/71 (42%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Frame = +2
Query: 272 ASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAP-------AHKRRKPS-----NLSQ 415
ASPP A SPS M+P P+P P S A A P A K KPS N +
Sbjct: 255 ASPPVAPSPSAMAPPPPAPPPPP----PSPAPAAPPPPPLPDVAQKSGKPSTSPVGNNNV 310
Query: 416 ASVXXXXXNHPLRQTSFPPEARS 484
S+ + LR S PP S
Sbjct: 311 NSLAAALKSAQLRSVSKPPNQAS 333
>pir||T41547 hypothetical protein SPCC70.01 - fission yeast (Schizosaccharomyces
pombe)
emb|CAA19351.1| (AL023794) hypothetical protein [Schizosaccharomyces pombe]
Length = 964
Score = 34.4 bits (77), Expect = 1.6
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Frame = +2
Query: 176 LRFNQPSPKFYLSIPNFYIYASRTIKQNI----TIMASPPYATSPSGM------SPTYPS 325
++ PS + ++ P + AS+ + + ++ +P +PS + +PT P
Sbjct: 183 IQLYDPSTQRQMARPMSNLQASQPVPSSTFSRSAVVPNPSLPLNPSVLQGQVMNNPTIPK 242
Query: 326 PAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHPLRQTSFPPEARSP 487
PS + P+H + P N AS NHP++ ++F P +P
Sbjct: 243 GT--PSTSIEGAKTSIPPSHAMQNPHNSFPASADRLQKNHPVQSSNFNPYTPAP 294
>pir||T41011 hypothetical protein SPCC1494.10 - fission yeast
(Schizosaccharomyces pombe) (fragment)
emb|CAA19308.1| (AL023776) hypothetical protein [Schizosaccharomyces pombe]
Length = 513
Score = 34.4 bits (77), Expect = 1.6
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Frame = +2
Query: 176 LRFNQPSPKFYLSIPNFYIYASRTIKQNI----TIMASPPYATSPSGM------SPTYPS 325
++ PS + ++ P + AS+ + + ++ +P +PS + +PT P
Sbjct: 183 IQLYDPSTQRQMARPMSNLQASQPVPSSTFSRSAVVPNPSLPLNPSVLQGQVMNNPTIPK 242
Query: 326 PAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHPLRQTSFPPEARSP 487
PS + P+H + P N AS NHP++ ++F P +P
Sbjct: 243 GT--PSTSIEGAKTSIPPSHAMQNPHNSFPASADRLQKNHPVQSSNFNPYTPAP 294
>pir||T04652 hypothetical protein F10N7.260 - Arabidopsis thaliana
emb|CAA16596.1| (AL021636) hypothetical protein [Arabidopsis thaliana]
emb|CAB79911.1| (AL161580) hypothetical protein [Arabidopsis thaliana]
Length = 191
Score = 34.4 bits (77), Expect = 1.6
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 252 NKTSQSWLLRLMLLPHRECHLPIHHPLKSPARSALQAPTPTRLLTNDANHQTSRKPPSQP 431
++T SW+ LLP+ + P KSP RS + R++ N+ +Q+ PP QP
Sbjct: 19 SRTLISWVRCKSLLPNHQSRDVTTSPAKSPFRSNI-----LRIIRNEIEYQSDYAPPHQP 73
Query: 432 RQQTTLFA 455
+ F+
Sbjct: 74 ATEFKSFS 81
>pir||T06336 proline-rich protein precursor - soybean
gb|AAC34889.1| (AF086759) proline-rich protein precursor [Glycine max]
Length = 338
Score = 34.4 bits (77), Expect = 1.6
Identities = 25/106 (23%), Positives = 39/106 (36%)
Frame = +2
Query: 185 NQPSPKFYLSIPNFYIYASRTIKQNITIMASPPYATSPSGMSPTYPSPAQIPSKKRSSGA 364
NQPS ++P + Q++T+ P +P + P +Q+P+ S
Sbjct: 75 NQPSVPVSSAVPALSHQSQPMAAQSLTMPQQPKGHLAPQVALASLPQSSQLPNIPSPS-- 132
Query: 365 DANAPAHKRRKPSNLSQASVXXXXXNHPLRQTSFPPEARSPYPRSP 502
H +P + +Q S HPL FP P R P
Sbjct: 133 -----LHSLSQPLHPTQMSTASSHLQHPLLTPGFPHMPLPPQIRQP 173
>pir||T38547 probable cell division protein kinase - fission yeast
(Schizosaccharomyces pombe)
emb|CAB16269.1| (Z99165) putative cell division protein kinase [Schizosaccharomyces
pombe]
Length = 593
Score = 34.4 bits (77), Expect = 1.6
Identities = 25/89 (28%), Positives = 41/89 (45%), Gaps = 3/89 (3%)
Frame = +2
Query: 218 PNFYIYASRTIKQNITI---MASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHK 388
P+FY S+ +N+T A ++S + +SP PS + SK+++S + P+
Sbjct: 113 PSFYRSGSQKRARNLTTKDYFAKRSESSSSASVSPISPSANRNDSKRQASSFRRSPPSSV 172
Query: 389 RRKPSNLSQASVXXXXXNHPLRQTSFPPEARS 484
KPS + V + P S P E S
Sbjct: 173 HMKPSAFNGRKVSRRPSSSPPPIPSIPHETTS 204
>pir||S21323 probable endoglucanase - Ruminococcus flavefaciens
emb|CAA39559.1| (X56082) endo-glucanase [Ruminococcus flavefaciens]
Length = 680
Score = 34.0 bits (76), Expect = 2.1
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +2
Query: 263 TIMASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRK 397
T +SPP + SPS SPT PSP+ S SS A +P + R+
Sbjct: 11 TPSSSPPTSPSPSPTSPTPPSPSTESSPTPSSPASPRSPTVRCRE 55
>gb|AAC36357.1| (AF091342) neurofilament-M subunit [Bos taurus]
Length = 810
Score = 34.0 bits (76), Expect = 2.1
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 272 ASPPYATSPSGMSPTYPSP-AQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHP 448
A P A SP+ SPT SP A+ P K + A + + P+ S + +
Sbjct: 502 AKSPVAKSPTTKSPTAKSPEAKSPEAKSPTAKSPTAKSPVAKSPTAKSPEAKSPEAKSPT 561
Query: 449 LRQ-TSFPPEARSPYPRSP 502
+ T+ P A+SP P+SP
Sbjct: 562 AKSPTAKSPAAKSPAPKSP 580
>pir||T19765 hypothetical protein C36A4.5 - Caenorhabditis elegans
emb|CAA91271.1| (Z66495) similar to claustrin like~cDNA EST yk541h12.5 comes from
this gene [Caenorhabditis elegans]
Length = 954
Score = 33.6 bits (75), Expect = 2.7
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +2
Query: 275 SPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHPLR 454
S P AT+P+ S +PA P R +D P + +Q S P
Sbjct: 438 SAPKATAPASTSS---APATAPEASRRDPSDVTIVLDDSLFPEDFNQGSAPMDIVVIP-- 492
Query: 455 QTSFPP---EARSPYPRSPFVDAQ 517
T PP EAR+ +P+ P VDA+
Sbjct: 493 PTPEPPRLEEARATHPKEPIVDAE 516
>pir||H72695 hypothetical protein APE0984 - Aeropyrum pernix (strain K1)
dbj|BAA79968.1| (AP000060) 191aa long hypothetical protein [Aeropyrum pernix]
Length = 191
Score = 33.2 bits (74), Expect = 3.5
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 315 PIHH--PLKSPARSALQAPTPTRLLTNDANHQTSRKPP 422
P HH P +P A + P P R+L N H T+R PP
Sbjct: 38 PRHHLQPRPNPTGQAQRLPRPDRVLHNPRRHNTARVPP 75
>gb|AAF22175.1|AF136381_1 (AF136381) c-Cbl-associated protein SH3P12 [Homo sapiens]
Length = 1004
Score = 33.2 bits (74), Expect = 3.5
Identities = 25/77 (32%), Positives = 29/77 (37%)
Frame = +2
Query: 272 ASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHPL 451
A PP P G PT P+ A S D P H +R P + AS P+
Sbjct: 168 ARPPTPLGPLGCVPTIPATASAASPLTFPTLDDFIPPHLQRWPHHSQPASACGSFA--PI 225
Query: 452 RQTSFPPEARSPYPRSP 502
QT PP P P P
Sbjct: 226 SQT--PPSFSPPPPLVP 240
>pir||S42674 adhesive protein - bifurcate mussel (fragments)
Length = 219
Score = 32.8 bits (73), Expect = 4.6
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 233 YASRTIKQNITIMASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSN 406
Y ++ A Y+T PS Y +PA+ P+K S G P KPS+
Sbjct: 156 YTTKPSSYGTGYKAPTKYSTKPSSYGTGYKAPAKYPTKPSSYGTGYKYPTKYTTKPSS 213
>gb|AAG01391.1|AF199499_1 (AF199499) period 2 [Xenopus laevis]
Length = 1427
Score = 32.8 bits (73), Expect = 4.6
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Frame = +2
Query: 281 PYATSPSGMSPTYPSP--------AQIPSKKRSSGADANAPAHKRRK----PSNLSQASV 424
PY P+ P +PSP AQIPS S+ AP P+ + AS+
Sbjct: 1001 PYPVLPAYPLPVFPSPQIPVPNETAQIPSANASTSQPFPAPLLPPMVALVLPNYVYPASL 1060
Query: 425 XXXXXNHPLRQTSFPPEARSPYPRSPFVDAQ 517
P Q +FP + S P+S F +Q
Sbjct: 1061 PTSLYPGPAPQPAFPAQQTSYLPQSTFPASQ 1091
>dbj|BAA78424.1| (AB021264) polyprotein [Arabidopsis thaliana]
Length = 1330
Score = 32.5 bits (72), Expect = 6.1
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +2
Query: 275 SPPYATSPSGMSPTYPSPAQIPSKKRS--SGADANAPAHK----RRKPSNLSQASVXXXX 436
SP +SPS + T S + +PS S S ++ AP+H +P ++
Sbjct: 651 SPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPI 710
Query: 437 XNHPLRQTSFP--PEARSPYPRSP 502
N+P + P P SP P+SP
Sbjct: 711 LNNPNPNSPSPNSPNQNSPLPQSP 734
>dbj|BAA97097.1| (AP002460) En/Spm transposon protein-like [Arabidopsis thaliana]
Length = 504
Score = 32.5 bits (72), Expect = 6.1
Identities = 25/84 (29%), Positives = 39/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 272 ASPP--YATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNH 445
+SPP YA +P+ + PS IP +GA ++AP ++ P + N
Sbjct: 32 SSPPQQYAFTPAATTVLVPS--SIPPLGAGAGASSSAPHYRNYPPPQ----QLFQHSTNQ 85
Query: 446 PLRQTSFPPE--ARSPYPRSPFVDAQAH 523
P R PP+ A+ P SP + +H
Sbjct: 86 PQRVDPLPPQETAQQDPPLSPDPETPSH 113
>pir||T30049 hypothetical protein K06C4.8 - Caenorhabditis elegans
gb|AAF98228.1| (U64843) similar to family 1 of G-protein coupled receptors
[Caenorhabditis elegans]
Length = 355
Score = 32.5 bits (72), Expect = 6.1
Identities = 14/30 (46%), Positives = 16/30 (52%)
Frame = +3
Query: 57 PRIGISKYVFFPSYRSASSVHHSFRAFSLL 146
P G K+ FFP Y SVH F AF L+
Sbjct: 74 PSFGTYKFPFFPGYHEIGSVHTIFSAFCLI 103
>pir||S54265 glycoprotein gC - bovine herpesvirus 5
emb|CAA89199.1| (Z49224) glycoprotein gC [Bovine herpesvirus 5]
Length = 487
Score = 32.5 bits (72), Expect = 6.1
Identities = 24/91 (26%), Positives = 36/91 (39%)
Frame = +2
Query: 230 IYASRTIKQNITIMASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSNL 409
+ A R + + ASPP +SP+ P+ P++ + GA PS+
Sbjct: 19 LLAGRGLAEEAEGEASPPPLPPRPSLSPSPSPPSPTPAETTNDGAGTLGAT--PTAPSHS 76
Query: 410 SQASVXXXXXNHPLRQTSFPPEARSPYPRSP 502
A+ + T PP A S PRSP
Sbjct: 77 PPATPKDSTTDETPLGTPAPPPANSTRPRSP 107
>pir||T01397 LTR gag/pol polyprotein homolog T4I9.16 - Arabidopsis thaliana
gb|AAC79110.1| (AF069442) putative polyprotein of LTR transposon [Arabidopsis
thaliana]
emb|CAB77781.1| (AL161495) putative polyprotein of LTR transposon [Arabidopsis
thaliana]
Length = 1456
Score = 32.5 bits (72), Expect = 6.1
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +2
Query: 275 SPPYATSPSGMSPTYPSPAQIPSKKRS--SGADANAPAHK----RRKPSNLSQASVXXXX 436
SP +SPS + T S + +PS S S ++ AP+H +P ++
Sbjct: 777 SPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPI 836
Query: 437 XNHPLRQTSFP--PEARSPYPRSP 502
N+P + P P SP P+SP
Sbjct: 837 LNNPNPNSPSPNSPNQNSPLPQSP 860
>pir||I58377 LTG19 - human
dbj|BAA03406.1| (D14539) LTG19 [Homo sapiens]
Length = 559
Score = 32.5 bits (72), Expect = 6.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 287 ATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSN 406
+TSP G P P P S KR + AD+ P+ K++K S+
Sbjct: 265 STSPKGGPPPPPPPPPRASSKRPATADSPKPSAKKQKKSS 304
>pir||T21338 hypothetical protein F25D7.4 - Caenorhabditis elegans
emb|CAB01697.1| (Z78418) similar to claustrin like~cDNA EST yk385b10.3 comes from
this gene~cDNA EST yk385b10.5 comes from this gene~cDNA
EST CEMSH64F comes from this gene~cDNA EST CEMSH64R
comes from this gene~cDNA EST yk576a11.3 comes from this
gene~cDNA EST yk576a1>
Length = 932
Score = 32.5 bits (72), Expect = 6.1
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 275 SPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHPLR 454
S P AT+P+ S +PA P R D P + +Q S P
Sbjct: 416 SAPKATAPASTSS---APATAPEASRRDPNDVTIVLDDSLFPEDFNQGSAPMDIVVIP-- 470
Query: 455 QTSFPP---EARSPYPRSPFVDAQ 517
T PP EAR+ +P+ P VDA+
Sbjct: 471 PTPEPPRLEEARATHPKEPIVDAE 494
>ref|NP_010086.1| Component (p150) of COPII coat of secretory pathway vesicles; Sec31p
sp|P38968|WEB1_YEAST WEB1 PROTEIN (PROTEIN TRANSPORT PROTEIN SEC31)
pir||S58782 SEC31 protein - yeast (Saccharomyces cerevisiae)
emb|CAA58252.1| (X83276) putative ORF [Saccharomyces cerevisiae]
emb|CAA98772.1| (Z74243) ORF YDL195w [Saccharomyces cerevisiae]
Length = 1273
Score = 32.1 bits (71), Expect = 7.9
Identities = 30/94 (31%), Positives = 41/94 (42%), Gaps = 11/94 (11%)
Frame = +2
Query: 233 YASRTIKQNITIMASP--PYATS-PSGMSPTY-----PSPAQIPSKKRSSGADANAPAHK 388
Y + +N+ ++ +P P TS PS +P Y S +P K +AP H
Sbjct: 763 YTNAKTNKNVPVLPTPGMPSTTSIPSMQAPFYGMTPGASANALPPKPYVPATTTSAPVHT 822
Query: 389 RRK---PSNLSQASVXXXXXNHPLRQTSFPPEARSPYPRSPFVDA 514
K PS S AS N R SF P P +P+ A
Sbjct: 823 EGKYAPPSQPSMASPFVNKTNSSTRLNSFAP------PPNPYATA 861
>gb|AAA50367.1| (U15219) Web1p [Saccharomyces cerevisiae]
Length = 1273
Score = 32.1 bits (71), Expect = 7.9
Identities = 30/94 (31%), Positives = 41/94 (42%), Gaps = 11/94 (11%)
Frame = +2
Query: 233 YASRTIKQNITIMASP--PYATS-PSGMSPTY-----PSPAQIPSKKRSSGADANAPAHK 388
Y + +N+ ++ +P P TS PS +P Y S +P K +AP H
Sbjct: 763 YTNAKTNKNVPVLPTPGMPSTTSIPSMQAPFYGMTPGASANALPPKPYVPATTTSAPVHT 822
Query: 389 RRK---PSNLSQASVXXXXXNHPLRQTSFPPEARSPYPRSPFVDA 514
K PS S AS N R SF P P +P+ A
Sbjct: 823 EGKYAPPSQPSMASPFVNKTNSSTRLNSFAP------PPNPYATA 861
>gb|AAB58418.1| (U37500) RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 32.1 bits (71), Expect = 7.9
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 275 SPPYATSPSG-MSPTYPSPAQIPSKKRSSGADANAPAHKRRKPS-NLSQASVXXXXXNHP 448
S PY SP G MSP+Y + + G +P++ PS + + S N+
Sbjct: 1578 SSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS 1637
Query: 449 LRQTSFPPEARSPYPRSP 502
S+ P + S P SP
Sbjct: 1638 PTSPSYSPTSPSYSPTSP 1655
>gb|AAD41978.1|AC006438_10 (AC006438) unknown protein [Arabidopsis thaliana]
Length = 727
Score = 32.1 bits (71), Expect = 7.9
Identities = 21/79 (26%), Positives = 31/79 (38%)
Frame = +2
Query: 266 IMASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNH 445
++ SPP A+SP P + +P+ P HK + P Q +
Sbjct: 443 VVHSPPPASSPPTSPPVHSTPS---------------PVHKPQPPKESPQPNDPYDQSPV 487
Query: 446 PLRQTSFPPEARSPYPRSP 502
R++ PP SP P SP
Sbjct: 488 KFRRSPPPPPVHSPPPPSP 506
>sp|P11414|RPB1_CRIGR DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (RPB1)
pir||A27677 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Chinese
hamster (fragment)
gb|AAA37008.1| (M19538) RNA polymerase II largest subunit [Cricetulus griseus]
Length = 467
Score = 32.1 bits (71), Expect = 7.9
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 275 SPPYATSPSG-MSPTYPSPAQIPSKKRSSGADANAPAHKRRKPS-NLSQASVXXXXXNHP 448
S PY SP G MSP+Y + + G +P++ PS + + S N+
Sbjct: 75 SSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS 134
Query: 449 LRQTSFPPEARSPYPRSP 502
S+ P + S P SP
Sbjct: 135 PTSPSYSPTSPSYSPTSP 152
>ref|NP_056200.1| DKFZP586P1422 protein
pir||T17257 hypothetical protein DKFZp586P1422.1 - human
emb|CAB55947.1| (AL117472) hypothetical protein [Homo sapiens]
Length = 816
Score = 32.1 bits (71), Expect = 7.9
Identities = 24/77 (31%), Positives = 28/77 (36%)
Frame = +2
Query: 272 ASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHPL 451
A PP P G PT P+ A S D P H +R P + A P+
Sbjct: 145 ARPPTPLGPLGCVPTIPATASAASPLTFPTLDDFIPPHLQRWPHHSQPARASGSFA--PI 202
Query: 452 RQTSFPPEARSPYPRSP 502
QT PP P P P
Sbjct: 203 SQT--PPSFSPPPPLVP 217
>gb|AAC41377.1| (AF036382) MLL [Takifugu rubripes]
Length = 4498
Score = 32.1 bits (71), Expect = 7.9
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +2
Query: 272 ASPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHPL 451
+S ++S S S + SP+ S ++AP+ ++++P N +S PL
Sbjct: 1494 SSSSSSSSSSSSSSSSSSPSSSAQNSPSQATQSHAPSQQQQRPVNSQASSKKDASPKIPL 1553
Query: 452 RQTSFPPEARSPYPRS 499
+T P+ S +S
Sbjct: 1554 SETKRKPQQHSAQQQS 1569
>pir||I38186 RNA polymerase II largest subunit - human
emb|CAA52862.1| (X74874) RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 32.1 bits (71), Expect = 7.9
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 275 SPPYATSPSG-MSPTYPSPAQIPSKKRSSGADANAPAHKRRKPS-NLSQASVXXXXXNHP 448
S PY SP G MSP+Y + + G +P++ PS + + S N+
Sbjct: 1578 SSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS 1637
Query: 449 LRQTSFPPEARSPYPRSP 502
S+ P + S P SP
Sbjct: 1638 PTSPSYSPTSPSYSPTSP 1655
>sp|P08775|RPB1_MOUSE DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (RPB1)
Length = 1970
Score = 32.1 bits (71), Expect = 7.9
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 275 SPPYATSPSG-MSPTYPSPAQIPSKKRSSGADANAPAHKRRKPS-NLSQASVXXXXXNHP 448
S PY SP G MSP+Y + + G +P++ PS + + S N+
Sbjct: 1578 SSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS 1637
Query: 449 LRQTSFPPEARSPYPRSP 502
S+ P + S P SP
Sbjct: 1638 PTSPSYSPTSPSYSPTSP 1655
>dbj|BAA22376.1| (D87293) RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 32.1 bits (71), Expect = 7.9
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 275 SPPYATSPSG-MSPTYPSPAQIPSKKRSSGADANAPAHKRRKPS-NLSQASVXXXXXNHP 448
S PY SP G MSP+Y + + G +P++ PS + + S N+
Sbjct: 1578 SSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS 1637
Query: 449 LRQTSFPPEARSPYPRSP 502
S+ P + S P SP
Sbjct: 1638 PTSPSYSPTSPSYSPTSP 1655
>ref|NP_000928.1| polymerase (RNA) II (DNA directed) polypeptide A (220kD)
sp|P24928|RPB1_HUMAN DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (RPB1)
pir||S21054 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - human
emb|CAA45125.1| (X63564) RNA polymerase II largest subunit [Homo sapiens]
dbj|BAA22377.1| (D87294) RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 32.1 bits (71), Expect = 7.9
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 275 SPPYATSPSG-MSPTYPSPAQIPSKKRSSGADANAPAHKRRKPS-NLSQASVXXXXXNHP 448
S PY SP G MSP+Y + + G +P++ PS + + S N+
Sbjct: 1578 SSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS 1637
Query: 449 LRQTSFPPEARSPYPRSP 502
S+ P + S P SP
Sbjct: 1638 PTSPSYSPTSPSYSPTSP 1655
>ref|NP_033115.1| RNA polymerase II 1
pir||A28490 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - mouse
gb|AAA40071.1| (M12130) RNA polymerase II [Mus musculus]
Length = 1932
Score = 32.1 bits (71), Expect = 7.9
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 275 SPPYATSPSG-MSPTYPSPAQIPSKKRSSGADANAPAHKRRKPS-NLSQASVXXXXXNHP 448
S PY SP G MSP+Y + + G +P++ PS + + S N+
Sbjct: 1540 SSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS 1599
Query: 449 LRQTSFPPEARSPYPRSP 502
S+ P + S P SP
Sbjct: 1600 PTSPSYSPTSPSYSPTSP 1617
>gb|AAF04257.1| (AF139114) subtilisin-like serine protease [Neospora caninum]
Length = 865
Score = 32.1 bits (71), Expect = 7.9
Identities = 24/81 (29%), Positives = 33/81 (40%)
Frame = +2
Query: 275 SPPYATSPSGMSPTYPSPAQIPSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHPLR 454
SP + P G SP PSP + PS+ R A +P +PS HP
Sbjct: 749 SPSKPSPPEGSSPRVPSPHRHPSRSRLPSAVEPSPPPASPQPS------------PHPSP 796
Query: 455 QTSFPPEARSPYPRSPFVDAQ 517
+ P + +P P SP D +
Sbjct: 797 PDTSPTKPSTP-PPSPSQDPE 816
>pir||F75513 ABC transporter, ATP-binding protein, EF-3 family - Deinococcus
radiodurans (strain R1)
gb|AAF10056.1|AE001907_2 (AE001907) ABC transporter, ATP-binding protein, EF-3 family
[Deinococcus radiodurans]
Length = 649
Score = 32.1 bits (71), Expect = 7.9
Identities = 20/51 (39%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
Frame = +2
Query: 338 PSKKRSSGADANAPAHKRRKPSNLSQASVXXXXXNHPLRQTSFP-PEARSPY 490
P KKR G A AP +RR + + N P +TSFP PE R Y
Sbjct: 12 PGKKRRGGQAAKAPRARRRNCVDFLRLDFSLHKFNGPGVRTSFPLPEQRVGY 63
>sp|Q09729|YA4C_SCHPO HYPOTHETICAL 65.9 KD PROTEIN C31A2.12 IN CHROMOSOME I
pir||S58106 hypothetical protein SPAC31A2.12 - fission yeast
(Schizosaccharomyces pombe)
pir||T38610 hypothetical 65.9 kd protein - fission yeast (Schizosaccharomyces
pombe)
emb|CAA90470.1| (Z50113) hypothetical 65.9 kd protein. [Schizosaccharomyces pombe]
Length = 596
Score = 32.1 bits (71), Expect = 7.9
Identities = 22/65 (33%), Positives = 36/65 (54%), Gaps = 5/65 (7%)
Frame = +2
Query: 269 MASPPYATSPSG-MSPTYPSPAQIPSKKR----SSGADANAPAHKRRKPSNLSQASVXXX 433
+ +PP TSPS +SPT + + S++ +S + +P+H ++LSQAS
Sbjct: 500 IVTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSSSGISPSHSSASLAHLSQASNPNG 559
Query: 434 XXNHPLRQTS 463
+ P R TS
Sbjct: 560 SSSAPHRPTS 569
>ref|NP_056526.1| glioma tumor suppressor candidate region gene 1
gb|AAF62874.1| (AF182077) glioma tumor suppressor candidate region protein 1 [Homo
sapiens]
Length = 1509
Score = 32.1 bits (71), Expect = 7.9
Identities = 27/101 (26%), Positives = 44/101 (42%), Gaps = 10/101 (9%)
Frame = +2
Query: 191 PSPKFYLSIPNFYIYASRTIKQNITIMASPPYATSPSGMSPTYPSPAQIPSKKRSSGADA 370
P P+ ++P ++ ++ + PP A++P+ PT P P Q P + +S +
Sbjct: 772 PPPQAPPTLPGIFVIQNQ--------LGVPPPASNPA---PTAPGPPQPPLRPQSQPPEG 820
Query: 371 NAPAHKRRKPSNLSQASVXXXXXNHPLR-------QTSFPPEA---RSPYP 493
P PS+ S A + L Q FPP +SP P
Sbjct: 821 PLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHKSPTP 871
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198067664
Number of Sequences: 565281
Number of extensions: 3903862
Number of successful extensions: 18110
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 18024
Number of HSP's gapped (non-prelim): 134
length of query: 274
length of database: 177,575,912
effective HSP length: 54
effective length of query: 219
effective length of database: 147,050,738
effective search space: 32204111622
effective search space used: 32204111622
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)