Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA06461.1| (D30801) TED3 [Zinnia elegans] 40 0.049
emb|CAB97482.1| (AL389901) related to pathway-specific nitr... 39 0.083
sp|P56959|FUS_MOUSE RNA-BINDING PROTEIN FUS (PIGPEN PROTEIN... 38 0.14
emb|CAA65425.1| (X96605) Ott protein [Mus musculus] 38 0.19
gb|AAF47722.1| (AE003477) CG14956 gene product [Drosophila ... 38 0.25
emb|CAA65426.1| (X96606) Ott protein [Mus musculus] 38 0.25
gb|AAB40929.1| (U83086) LimA [Dictyostelium discoideum] 38 0.25
emb|CAA65424.1| (X96604) Ott protein [Mus musculus] 37 0.32
gb|AAF14002.1| (AF206287) SUP35 homolog [Candida albicans] 36 0.72
pir||T20720 hypothetical protein F10F2.9 - Caenorhabditis e... 36 0.72
sp|O13354|ERF2_CANAL EUKARYOTIC PEPTIDE CHAIN RELEASE FACTO... 36 0.72
ref|NP_004951.1| fusion, derived from t(12;16) malignant li... 36 0.95
dbj|BAB12682.1| (AB039751) polypeptide release factor 3 [De... 36 0.95
gb|AAB27103.1| (S62138) TLS-CHOP=fusion protein(CHOP=C/EBP ... 36 0.95
gb|AAF86203.1|AF238888_1 (AF238888) putative VrrB [Bacillus... 35 1.2
emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [... 35 1.6
pir||T32761 hypothetical protein T12F5.5 - Caenorhabditis e... 34 2.1
gb|AAC35284.1| (AF071213) FUS/TLS protein [Homo sapiens] >g... 34 2.1
pir||S52714 sericin1B - silkworm >gi|755700|emb|CAA88741.1|... 34 2.1
pir||T26526 hypothetical protein Y18D10A.17 - Caenorhabditi... 34 2.8
pir||T20847 hypothetical protein F13E9.4 - Caenorhabditis e... 34 2.8
gb|AAF54964.1| (AE003701) sqd gene product [Drosophila mela... 34 3.7
pir||T15277 hypothetical protein R10F2.6 - Caenorhabditis e... 34 3.7
pir||T26825 hypothetical protein Y43C5A.3 - Caenorhabditis ... 34 3.7
pir||C29349 hypothetical protein 3 - fruit fly (Drosophila ... 34 3.7
pir||C41732 heterogeneous nuclear RNP protein clone pHRP40.... 34 3.7
pir||A47369 RNA-binding protein (alternatively spliced) Sqd... 34 3.7
sp|Q92804|RB56_HUMAN TATA-BINDING PROTEIN ASSOCIATED FACTOR... 34 3.7
ref|NP_003478.1| RNA-binding protein 56 >gi|7440065|pir||S7... 33 4.8
gb|AAF69672.1| (AF124332) double-stranded RNA-specific edit... 33 4.8
gb|AAD45326.1|AF159533_1 (AF159533) glucan synthase [Coccid... 33 4.8
pir||T04011 hypothetical protein T5L19.200 - Arabidopsis th... 33 4.8
dbj|BAA34421.1| (AB010261) TAR-binding protein [Drosophila ... 33 6.3
emb|CAB71904.1| (AL138642) RAV-like protein [Arabidopsis th... 33 6.3
gb|AAF47078.1| (AE003462) TBPH gene product [alt 1] [Drosop... 33 6.3
pir||T06256 dormancy-associated protein 2 - garden pea >gi|... 33 6.3
gb|AAF55524.1| (AE003721) CG18599 gene product [Drosophila ... 33 6.3
gb|AAF49754.1| (AE003535) CG6419 gene product [Drosophila m... 33 6.3
ref|NP_055740.1| KIAA1002 protein >gi|4589648|dbj|BAA76846.... 33 6.3
pir||S56750 single stranded D box binding factor 2 - chicken 32 8.2
gb|AAF46035.1| (AE003434) CG15784 gene product [Drosophila ... 32 8.2
sp|P11898|GRP1_CHERU GLYCINE-RICH PROTEIN HC1 >gi|81450|pir... 32 8.2
sp|P37703|GRP9_DAUCA GLYCINE-RICH PROTEIN DC9.1 >gi|486811|... 32 8.2
gb|AAA63248.1| (M60502) profilaggrin [Homo sapiens] 32 8.2
gb|AAF45593.1| (AE003420) CG11381 gene product [Drosophila ... 32 8.2
emb|CAB58085.1| (AL121806) /prediction=(method:""genefinder... 32 8.2
>dbj|BAA06461.1| (D30801) TED3 [Zinnia elegans]
Length = 319
Score = 39.9 bits (91), Expect = 0.049
Identities = 23/67 (34%), Positives = 37/67 (54%), Gaps = 15/67 (22%)
Frame = -2
Query: 459 YSSYGTGYQN--------------HASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQA 322
YS+ G GY N + NGY N + Y N+N + NG ++ +
Sbjct: 84 YSNNGNGYSNSLNENHGYSNNENGYNQNGYNNGNGYSQNGYNNNENGYNDNGNTNNENEN 143
Query: 321 GYNNDPSH-QHQDGQHWSGNSR 259
GYNN + Q+ D + +GN++
Sbjct: 144 GYNNQNGYNQNGDTNNENGNNQ 165
>emb|CAB97482.1| (AL389901) related to pathway-specific nitrogen regulator [Neurospora
crassa]
Length = 1203
Score = 39.1 bits (89), Expect = 0.083
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -2
Query: 429 HASNGYGNSWLSQPSAYEQNQNAFAH---NGRQDHGGQAGYNNDPSHQHQDGQHW 274
HAS + N+ LS PS + H N +Q H G +G+N+ PS+Q Q H+
Sbjct: 976 HASTPFDNTLLSPPSGPLTDPGGLHHQNQNQQQQHHGHSGHNSSPSYQTQGQTHY 1030
>sp|P56959|FUS_MOUSE RNA-BINDING PROTEIN FUS (PIGPEN PROTEIN)
gb|AAF70602.1| (AF224264) pigpen protein [Mus musculus]
Length = 518
Score = 38.3 bits (87), Expect = 0.14
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = -2
Query: 471 GTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNA--FAHNGRQDHGGQAGYNNDPSH 298
G YS YG Q+ ++GYG S S S+Y Q QN + Q +G GY + S
Sbjct: 34 GQQSYSGYG---QSADTSGYGQS--SYGSSYGQTQNTGYGTQSAPQGYGSTGGYGSSQSS 88
Query: 297 QHQDGQH--WSGNSREPATSA 241
Q GQ + G ++PA S+
Sbjct: 89 QSSYGQQSSYPGYGQQPAPSS 109
>emb|CAA65425.1| (X96605) Ott protein [Mus musculus]
Length = 292
Score = 37.9 bits (86), Expect = 0.19
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Frame = -2
Query: 510 HPQDSVSTDFSMEGTADYSSYGTGYQNHA-------SNGY----------GNSWLSQPSA 382
H Q SV + G + G +QNHA S+ Y NS ++ P
Sbjct: 82 HNQLSVRPHPDLSGRTLHDYSGRPHQNHAVRFQHGHSDRYHLTHTERVLPNNSGIAHPGH 141
Query: 381 YEQNQNAFAHNGRQDHGGQAGYNNDP-SHQHQDGQHWSGNSREPATSAEESRDHTYRWY* 205
E++ + G A +N+D SH G+ + G++R + D+ W
Sbjct: 142 TERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRD 201
Query: 204 SNLAWKKNVNMSSK 163
N +W+ N S +
Sbjct: 202 LNQSWRGQNNQSQR 215
>gb|AAF47722.1| (AE003477) CG14956 gene product [Drosophila melanogaster]
Length = 556
Score = 37.5 bits (85), Expect = 0.25
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Frame = -2
Query: 1035 RERSRPAPQLAPSVELEAVVSCTSDGLVVILRRARPQIPDAHNPQVPSINDRGVFAAPWA 856
R S PAP LAPS ++S S +I + + P +P + A
Sbjct: 170 RHASEPAPSLAPST--PHLLSVPSSTPYLIKQHSDPLLPRQSALHMAGSGSGSSSAMATG 227
Query: 855 QQPF---HAQYSH-----ETFHNFQAPL-APQHMPLRSGIQATGGPP 742
PF H QYSH + APL P H+ L I A+G PP
Sbjct: 228 SNPFAPLHRQYSHPLSGSNASYVTPAPLHHPHHISLPESIYASGSPP 274
>emb|CAA65426.1| (X96606) Ott protein [Mus musculus]
Length = 449
Score = 37.5 bits (85), Expect = 0.25
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Frame = -2
Query: 510 HPQDSVSTDFSMEGTADYSSYGTGYQNHA-------SNGY----------GNSWLSQPSA 382
H Q SV + G + G +QNHA S+ Y NS ++ P
Sbjct: 167 HNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGH 226
Query: 381 YEQNQNAFAHNGRQDHGGQAGYNNDP-SHQHQDGQHWSGNSREPATSAEESRDHTYRWY* 205
E++ + G A +N+D SH G+ + G++R + D+ W
Sbjct: 227 TERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRD 286
Query: 204 SNLAWKKNVNMSSK 163
N +W+ N S +
Sbjct: 287 LNQSWRGQNNQSQR 300
>gb|AAB40929.1| (U83086) LimA [Dictyostelium discoideum]
Length = 623
Score = 37.5 bits (85), Expect = 0.25
Identities = 45/209 (21%), Positives = 84/209 (39%), Gaps = 11/209 (5%)
Frame = -2
Query: 843 HAQYSHETFHNFQAPLAPQHMPLRSGIQATGGPPMDQLMQSIRDVAVFAWALCGINGNIA 664
H Q+SH H+F QH PL+ T P+ Q I + + + ++ NI
Sbjct: 213 HHQHSHSQPHSFDHN-QHQHQPLQHH-HHTHSQPISIQHQHIENKHIDSPIQHHVSHNIK 270
Query: 663 S----YSHGQPSGEAQPPDGLPIWDPTGEESS-YEGPYNXXXXXXXXXXXXXQPSLHPQD 499
+ + H PS +P + + T ++ Y+ P + S+ +
Sbjct: 271 NSHHQHQHQHPSHSDEPIVQQHVQETTKTTTTQYKPPQS---------------SIQNNN 315
Query: 498 SVSTDFSMEGTADYSSYGTGYQNHASNG------YGNSWLSQPSAYEQNQNAFAHNGRQD 337
+ + + +E + +S + H +NG Y ++++ Y QNQN H+ Q
Sbjct: 316 NNNNNLIIEDSTHHS-----HNLHNNNGRDGIKSYSKTFITDDPNYHQNQNQNQHHSHQH 370
Query: 336 HGGQAGYNNDPSHQHQDGQHWSGNSREPATSAEESRDHTY 217
H Q + HQHQ Q + + + ++ Y
Sbjct: 371 HSHQHHSHQHHHHQHQPYQQQQQQIKVDSLPPQRPKEKVY 410
>emb|CAA65424.1| (X96604) Ott protein [Mus musculus]
Length = 356
Score = 37.1 bits (84), Expect = 0.32
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Frame = -2
Query: 510 HPQDSVSTDFSMEGTADYSSYGTGYQNHA-------SNGY----------GNSWLSQPSA 382
H Q SV + G + G +QNHA S+ Y +S ++ P
Sbjct: 90 HNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPSHSGIAHPGH 149
Query: 381 YEQNQNAFAHNGRQDHGGQAGYNNDP-SHQHQDGQHWSGNSREPATSAEESRDHTYRWY* 205
E++ A +H G A +N+D SH G+ + G++ + D+ W
Sbjct: 150 TERDNQAQRGRAHDNHTGLAHHNHDGRSHHDHSGRAYHGHAMRAHNNQSWRSDNNQSWRD 209
Query: 204 SNLAWKKNVNMSSK 163
N +W+ N S +
Sbjct: 210 LNQSWRGQNNQSQR 223
>gb|AAF14002.1| (AF206287) SUP35 homolog [Candida albicans]
Length = 299
Score = 36.0 bits (81), Expect = 0.72
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 471 GTADYSSYGTGYQNHASN--GYGNSWLSQPSAYEQNQNAFA----HNGRQDHGGQAGYNN 310
G Y+ Y GYQ + +N GY + ++ Y+QN N +N Q +GG YN+
Sbjct: 73 GYNQYNQYQGGYQQNYNNRGGYQQGYNNR-GGYQQNYNNRGGYQGYNQNQQYGGYQQYNS 131
Query: 309 DPSHQHQ 289
P Q Q
Sbjct: 132 QPQQQQQ 138
>pir||T20720 hypothetical protein F10F2.9 - Caenorhabditis elegans
emb|CAA84658.1| (Z35598) Asparagine, Serine and Glycine rich predicted protein
[Caenorhabditis elegans]
emb|CAA86461.1| (Z46343) Asparagine, Serine and Glycine rich predicted protein
[Caenorhabditis elegans]
Length = 549
Score = 36.0 bits (81), Expect = 0.72
Identities = 21/66 (31%), Positives = 33/66 (49%)
Frame = -2
Query: 459 YSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQHQDGQ 280
YS G G N+ ++G+G+S S + N N G ++GG G NN ++ DG
Sbjct: 418 YSKNGYGSNNNRNDGWGSS-SSNNNNNNNNNNNGGTGGYSNNGGGWGSNN--NNNGNDGN 474
Query: 279 HWSGNS 262
+W N+
Sbjct: 475 NWESNN 480
>sp|O13354|ERF2_CANAL EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT (ERF2)
(TRANSLATION RELEASE FACTOR 3) (ERF3) (ERF-3)
gb|AAB82541.1| (AF020554) translation release factor 3 [Candida albicans]
Length = 715
Score = 36.0 bits (81), Expect = 0.72
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 471 GTADYSSYGTGYQNHASN--GYGNSWLSQPSAYEQNQNAFA----HNGRQDHGGQAGYNN 310
G Y+ Y GYQ + +N GY + ++ Y+QN N +N Q +GG YN+
Sbjct: 59 GYNQYNQYQGGYQQNYNNRGGYQQGYNNR-GGYQQNYNNRGGYQGYNQNQQYGGYQQYNS 117
Query: 309 DPSHQHQ 289
P Q Q
Sbjct: 118 QPQQQQQ 124
>ref|NP_004951.1| fusion, derived from t(12;16) malignant liposarcoma
sp|P35637|FUS_HUMAN RNA-BINDING PROTEIN FUS (ONCOGENE FUS) (ONCOGENE TLS) (TRANSLOCATED
IN LIPOSARCOMA PROTEIN) (POMP75) (75 KDA DNA-PAIRING
PROTEIN)
pir||S33799 RNA-binding protein FUS, nuclear - human
gb|AAB27102.1| (S62140) TLS=nuclear RNA-binding protein [human, Peptide, 526 aa]
[Homo sapiens]
gb|AAC35285.1| (AF071213) FUS/TLS protein [Homo sapiens]
Length = 526
Score = 35.6 bits (80), Expect = 0.95
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Frame = -2
Query: 498 SVSTDFSMEGTADYSSYG----TGYQNH-------ASNGYGNSWLSQPSAYEQNQNAFAH 352
S STD S G + YSSYG TGY ++ GYG+S SQ S+Y Q + +
Sbjct: 42 SQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQ-SSYGQQSSYPGY 100
Query: 351 NGRQDHGGQAGYNNDPSHQHQDGQHWSGN-SREPATSAEE 235
+ +G S GQ SG+ S++P+ ++
Sbjct: 101 GQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
>dbj|BAB12682.1| (AB039751) polypeptide release factor 3 [Debaryomyces hansenii]
Length = 701
Score = 35.6 bits (80), Expect = 0.95
Identities = 29/123 (23%), Positives = 42/123 (33%)
Frame = -2
Query: 648 QPSGEAQPPDGLPIWDPTGEESSYEGPYNXXXXXXXXXXXXXQPSLHPQDSVSTDFSMEG 469
QP + P + P+G++ Y+G Y Q +
Sbjct: 37 QPQQNNFNANSAPTFTPSGQQGGYQGGY--------------------QGGYQGGYQNYS 76
Query: 468 TADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQHQ 289
Y +Y GYQN+ + GY QN N +N + GG YNN + Q
Sbjct: 77 QGGYQNYNQGYQNY-NQGYQG---------YQNNNRGGYNSYNNRGGYNNYNN---YNQQ 123
Query: 288 DGQ 280
D Q
Sbjct: 124 DQQ 126
>gb|AAB27103.1| (S62138) TLS-CHOP=fusion protein(CHOP=C/EBP transcription factor,
TLS=nuclear RNA-binding protein) [human, myxoid
liposarcomas cells, Peptide Mutant, 462 aa] [Homo
sapiens]
emb|CAA50558.1| (X71427) FUS-CHOP protein fusion [Homo sapiens]
prf||1916411A TLS-CHOP protein [Homo sapiens]
Length = 462
Score = 35.6 bits (80), Expect = 0.95
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Frame = -2
Query: 498 SVSTDFSMEGTADYSSYG----TGYQNH-------ASNGYGNSWLSQPSAYEQNQNAFAH 352
S STD S G + YSSYG TGY ++ GYG+S SQ S+Y Q + +
Sbjct: 42 SQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQ-SSYGQQSSYPGY 100
Query: 351 NGRQDHGGQAGYNNDPSHQHQDGQHWSGN-SREPATSAEE 235
+ +G S GQ SG+ S++P+ ++
Sbjct: 101 GQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
>gb|AAF86203.1|AF238888_1 (AF238888) putative VrrB [Bacillus cereus]
Length = 294
Score = 35.2 bits (79), Expect = 1.2
Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Frame = -2
Query: 675 GNIASYSHGQPSGEAQPPDGLPIWDPT---GEESSYEGPYNXXXXXXXXXXXXX---QPS 514
G I S+ G P G + G+ PT G SS G P+
Sbjct: 13 GGIPSWMGGTPGGFSTSVAGVQTGIPTLTGGFPSSVAGVQTGIPTFVGGAAGGVPVGVPT 72
Query: 513 LHPQ--DSVSTDFSMEGTADYSSYGTGYQN--HASNGYGNSWLSQPS--AYEQNQNAFAH 352
P V T F + G + GY H +G+ + Q + +Q H
Sbjct: 73 AFPSFVGGVQTGFPVPGVGVVAGGVGGYPQVVHGYHGHHHHHQGQHGHHGHHHHQGQHGH 132
Query: 351 NGRQDHGGQAGYNNDPSHQHQDGQH 277
+G H GQ G++ HQ Q G H
Sbjct: 133 HGHHHHQGQHGHHGHHHHQGQHGHH 157
>emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [Plasmodium falciparum]
Length = 1946
Score = 34.8 bits (78), Expect = 1.6
Identities = 16/77 (20%), Positives = 36/77 (45%)
Frame = -2
Query: 492 STDFSMEGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYN 313
+ D + + + Y+SY + N +N + NS + + N + +HN ++ +N
Sbjct: 292 NNDNNNDNYSYYNSYNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHN 351
Query: 312 NDPSHQHQDGQHWSGNS 262
N ++ H + + S N+
Sbjct: 352 NSHNNSHNNSHNNSHNN 368
Score = 34.4 bits (77), Expect = 2.1
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = -2
Query: 486 DFSMEGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNND 307
+++ + D SY Y N +N + NS + + N + +HN ++ +NN
Sbjct: 290 EYNNDNNNDNYSYYNSYNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNS 349
Query: 306 PSHQHQDGQHWSGNS 262
++ H + + S N+
Sbjct: 350 HNNSHNNSHNNSHNN 364
>pir||T32761 hypothetical protein T12F5.5 - Caenorhabditis elegans
gb|AAB96747.1| (AF039718) contains similarity to lupus LA protein homologs
[Caenorhabditis elegans]
Length = 631
Score = 34.4 bits (77), Expect = 2.1
Identities = 20/78 (25%), Positives = 32/78 (40%), Gaps = 2/78 (2%)
Frame = -2
Query: 447 GTGYQNHASNGYGNSWLSQPSAYEQNQNAFAH--NGRQDHGGQAGYNNDPSHQHQDGQHW 274
G +NGYG Y+Q+ N H NG+Q G+ G++N + W
Sbjct: 395 GNNRNGATTNGYG---------YQQHNNRQNHYQNGQQRENGENGHHNHYQNGQSSNSWW 445
Query: 273 SGNSREPATSAEESRDHTYR 214
SGN + ++ + R
Sbjct: 446 SGNDGQTRQRKQQHNGYNNR 465
>gb|AAC35284.1| (AF071213) FUS/TLS protein [Homo sapiens]
emb|CAA50559.1| (X71428) FUS gycline rich protein [Homo sapiens]
Length = 525
Score = 34.4 bits (77), Expect = 2.1
Identities = 28/88 (31%), Positives = 45/88 (50%), Gaps = 11/88 (12%)
Frame = -2
Query: 498 SVSTDFSMEGTADYSSYGTGYQNH----------ASNGYGNSWLSQPSAYEQNQNAFAHN 349
S STD S G + YSSYG ++ ++ GYG+S SQ S+Y Q + +
Sbjct: 42 SQSTDTSGYGQSSYSSYGQSQNSYGTQSTPQGYGSTGGYGSSQSSQ-SSYGQQSSYPGYG 100
Query: 348 GRQDHGGQAGYNNDPSHQHQDGQHWSGN-SREPATSAEE 235
+ +G S GQ SG+ S++P+ ++
Sbjct: 101 QQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 139
>pir||S52714 sericin1B - silkworm
emb|CAA88741.1| (Z48802) sericin1B [Bombyx mori]
Length = 1217
Score = 34.4 bits (77), Expect = 2.1
Identities = 24/85 (28%), Positives = 40/85 (46%), Gaps = 8/85 (9%)
Frame = -2
Query: 474 EGTADYSSYGTGYQNHASNGYGNSWLSQPSAYE-QNQNAFAHNGRQDHGGQAGYNNDPSH 298
+ AD S Y N S+G ++ LS SA +N N F + + GGQA +
Sbjct: 191 DSRADSSRRSNAYYNRDSDGSESAGLSDRSASSSKNDNVFVYRTKDSIGGQAKSSRSSHS 250
Query: 297 QHQDGQH-------WSGNSREPATSAEESRDHT 220
Q D + ++ +R+ +TS ++ T
Sbjct: 251 QESDAYYNSSPDGSYNAGTRDSSTSNKKKASST 283
>pir||T26526 hypothetical protein Y18D10A.17 - Caenorhabditis elegans
emb|CAA22317.1| (AL034393) predicted using Genefinder~cDNA EST yk343c12.5 comes
from this gene; cDNA EST yk402e12.5 comes from this
gene~cDNA EST yk457e8.5 comes from this gene; cDNA EST
yk470f2.5 comes from this gene~cDNA EST yk281e3.5 comes
from this gene; cDNA EST >
Length = 340
Score = 34.0 bits (76), Expect = 2.8
Identities = 19/41 (46%), Positives = 23/41 (55%), Gaps = 14/41 (34%)
Frame = -2
Query: 378 EQNQNAFAHN--------------GRQDHGGQAGYNNDPSHQHQDGQHWSGNSRE 256
E NQ F HN GR + G GYNN HQHQ ++G R+
Sbjct: 261 ETNQETFGHNAVRSLNYRRGFGGRGRGGNRGYGGYNNGYQHQHQHRGGYNGGYRQ 315
>pir||T20847 hypothetical protein F13E9.4 - Caenorhabditis elegans
emb|CAA93412.1| (Z69383) F13E9.4 [Caenorhabditis elegans]
Length = 409
Score = 34.0 bits (76), Expect = 2.8
Identities = 23/62 (37%), Positives = 31/62 (49%), Gaps = 3/62 (4%)
Frame = -2
Query: 447 GTGYQNHASNGYGN-SWLSQPSAYEQNQNAFAH-NGRQDHGGQAGY-NNDPSHQHQDGQH 277
G G NG+G S S S + N + A+ NG + G +GY NN HQ Q G H
Sbjct: 147 GQGGYGQNQNGFGGQSGFSGQSGWGSNSLSSANSNGNNNQGSSSGYQNNQGRHQGQGGGH 206
Query: 276 WSGNS 262
S ++
Sbjct: 207 SSSSN 211
>gb|AAF54964.1| (AE003701) sqd gene product [Drosophila melanogaster]
Length = 378
Score = 33.6 bits (75), Expect = 3.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 474 EGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGY--NNDPS 301
+G Y YG GY + + GYG+ + Y + +Q Q Y NN S
Sbjct: 306 DGQGSYGGYGGGYGGYGAGGYGDYYAG--GYYNGYDYGYGKYNKQQSSAQNNYYNNNTSS 363
Query: 300 HQHQD 286
+ HQ+
Sbjct: 364 NYHQN 368
>pir||T15277 hypothetical protein R10F2.6 - Caenorhabditis elegans
gb|AAB54269.1| (AF003388) R10F2.6 gene product [Caenorhabditis elegans]
Length = 1150
Score = 33.6 bits (75), Expect = 3.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 883 SWRFRCPLGATTLPCTVFA*DLPQFPGPIGSAAYAAAQRNSGYWR 749
+W P T P + LP PGP + + +NSGYWR
Sbjct: 322 TWNLDDPEIVTGFPSQILVPSLPTLPGPQAAKKHFQRIQNSGYWR 366
>pir||T26825 hypothetical protein Y43C5A.3 - Caenorhabditis elegans
emb|CAA19503.1| (AL023838) predicted using Genefinder [Caenorhabditis elegans]
Length = 108
Score = 33.6 bits (75), Expect = 3.7
Identities = 18/47 (38%), Positives = 24/47 (50%)
Frame = -2
Query: 450 YGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNN 310
YG GY N+ GYGN + S S + + G ++GG GYNN
Sbjct: 30 YGGGYGNYG--GYGNYYPSYSSYSYYPSYGYNNYGYGNYGGYGGYNN 74
>pir||C29349 hypothetical protein 3 - fruit fly (Drosophila melanogaster)
transposon 412
emb|CAA27749.1| (X04132) ORF 3 (RNA1) [Drosophila melanogaster]
Length = 455
Score = 33.6 bits (75), Expect = 3.7
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = -2
Query: 453 SYGTGYQN--HASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQHQDGQ 280
+Y GYQN + +NGY N+ + Y N N + R + G G NN ++ +++
Sbjct: 380 NYHNGYQNNGYQNNGYQNN--GYQNRYNGNNNRYNGYNRGRYNGNRGRNNSQNNYNRNNA 437
Query: 279 H-----WSGNSREP 253
+ GNS++P
Sbjct: 438 NVRVIQEQGNSQQP 451
>pir||C41732 heterogeneous nuclear RNP protein clone pHRP40.1 - fruit fly
(Drosophila melanogaster)
emb|CAA44503.1| (X62637) hrp40.1 [Drosophila melanogaster]
Length = 321
Score = 33.6 bits (75), Expect = 3.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 474 EGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGY--NNDPS 301
+G Y YG GY + + GYG+ + Y + +Q Q Y NN S
Sbjct: 249 DGQGSYGGYGGGYGGYGAGGYGDYYAG--GYYNGYDYGYGKYNKQQSSAQNNYYNNNTSS 306
Query: 300 HQHQD 286
+ HQ+
Sbjct: 307 NYHQN 311
>pir||A47369 RNA-binding protein (alternatively spliced) SqdA - fruit fly
(Drosophila melanogaster)
gb|AAB26988.1| (S62100) SqdA=RNA-binding protein {alternatively spliced}
[Drosophila melanogaster, Peptide, 321 aa]
Length = 321
Score = 33.6 bits (75), Expect = 3.7
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 474 EGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGY--NNDPS 301
+G Y YG GY + + GYG+ + Y + +Q Q Y NN S
Sbjct: 249 DGQGSYGGYGGGYGGYGAGGYGDYYAG--GYYNGYDYGYGKYNKQQSSAQNNYYNNNTSS 306
Query: 300 HQHQD 286
+ HQ+
Sbjct: 307 NYHQN 311
>sp|Q92804|RB56_HUMAN TATA-BINDING PROTEIN ASSOCIATED FACTOR 2N (RNA-BINDING PROTEIN 56)
(TAFII68) (TAF(II)68)
gb|AAC50932.1| (U51334) putative RNA binding protein RBP56 [Homo sapiens]
dbj|BAA33811.1| (AB010067) alternative splicing [Homo sapiens]
Length = 592
Score = 33.6 bits (75), Expect = 3.7
Identities = 26/105 (24%), Positives = 33/105 (30%)
Frame = -2
Query: 582 SYEGPYNXXXXXXXXXXXXXQPSLHPQDSVSTDFSMEGTADYSSYGTGYQNHASNGYGNS 403
S G Y P S +S G SSYG Y ++S G S
Sbjct: 2 SDSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQS 61
Query: 402 WLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQHQDGQHWSG 268
SQ +NQ +Q Q YNN Q+ + G
Sbjct: 62 GYSQSYGGYENQ-------KQSSYSQQPYNNQGQQQNMESSGSQG 99
>ref|NP_003478.1| RNA-binding protein 56
pir||S71954 RNA/ssDNA-binding protein TAFII68 - human
emb|CAA67398.1| (X98893) hTAFII68 [Homo sapiens]
dbj|BAA33812.1| (AB010067) alternative splicing [Homo sapiens]
Length = 589
Score = 33.2 bits (74), Expect = 4.8
Identities = 31/117 (26%), Positives = 46/117 (38%), Gaps = 14/117 (11%)
Frame = -2
Query: 582 SYEGPYNXXXXXXXXXXXXXQPSLHPQDSVSTDFSMEGTADYSSYGTGYQNHASNGYGNS 403
S G Y P S +S G SSYG Y ++S YG S
Sbjct: 2 SDSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSS--YGQS 59
Query: 402 WLSQPSAYEQ------NQNAFAHNGRQDH-------GGQAGYNNDPSHQHQDG-QHWSGN 265
+ YE +Q + + G+Q + GG+A + P + QD SG
Sbjct: 60 YSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGY 119
Query: 264 SREPATSAEES 232
+ + E+S
Sbjct: 120 DQHQGSYDEQS 130
>gb|AAF69672.1| (AF124332) double-stranded RNA-specific editase [Danio rerio]
Length = 1382
Score = 33.2 bits (74), Expect = 4.8
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = -2
Query: 507 PQDSVSTDFSMEGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHG- 331
P+ S S+ E + + Y TGY++ SN Y + + Y + Q+ + G Q+ G
Sbjct: 123 PRGSQSSSRGEEVSTEPIQYQTGYRDFKSNSYS---FGRRNCYGRGQDNW--QGEQNFGP 177
Query: 330 -GQAGYNNDPSHQHQDGQHWS 271
++G+N H HQ GQ++S
Sbjct: 178 KKRSGWN----HPHQKGQYYS 194
>gb|AAD45326.1|AF159533_1 (AF159533) glucan synthase [Coccidioides immitis]
Length = 1860
Score = 33.2 bits (74), Expect = 4.8
Identities = 25/78 (32%), Positives = 32/78 (40%), Gaps = 2/78 (2%)
Frame = -2
Query: 465 ADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQHQD 286
ADYS +G GY + NGY + Q Y NQ +G Q Y ND +
Sbjct: 8 ADYSQHGDGYYDR--NGYDPNNPYQQDGYYDNQ----------YGYQDDYYNDQYYDQGS 55
Query: 285 G--QHWSGNSREPATSAEES 232
G +W G S E+S
Sbjct: 56 GPSNNWQGGYPRRGDSEEDS 75
>pir||T04011 hypothetical protein T5L19.200 - Arabidopsis thaliana
emb|CAB39631.1| (AL049481) putative DNA-directed RNA polymerase [Arabidopsis
thaliana]
emb|CAB78130.1| (AL161516) putative DNA-directed RNA polymerase [Arabidopsis
thaliana]
Length = 748
Score = 33.2 bits (74), Expect = 4.8
Identities = 30/116 (25%), Positives = 42/116 (35%), Gaps = 2/116 (1%)
Frame = -2
Query: 678 NGNIASYSHG--QPSGEAQPPDGLPIWDPTGEESSYEGPYNXXXXXXXXXXXXXQPSLHP 505
N +SYS G QP+ Q P G P W G + + PY+ HP
Sbjct: 368 NARPSSYSGGYNQPAYRPQGPGGPPQWGSRGPHAPH--PYD----------------YHP 409
Query: 504 QDSVSTDFSMEGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHG 331
+ S+ S + + Y + GYG W +P Y N + G Q G
Sbjct: 410 RGPYSSQGSYYNSPGFGGYPPQHM-PPRGGYGTDWDQRP-PYSGPYNYYGRQGAQSAG 465
>dbj|BAA34421.1| (AB010261) TAR-binding protein [Drosophila melanogaster]
dbj|BAA34428.1| (AB019705) TAR-binding protein [Drosophila melanogaster]
dbj|BAA34429.1| (AB019706) TAR-binding protein [Drosophila melanogaster]
Length = 531
Score = 32.8 bits (73), Expect = 6.3
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 471 GTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQH 292
GTA Y G Y ++ GY N+ N ++ + RQD G Q YN+ S+ H
Sbjct: 327 GTAGYGMGGNNYGGNSGGGYHNN--------GGNHSSGGNTNRQDGGSQ--YNSRQSNFH 376
Query: 291 QDGQHWSGN 265
Q +GN
Sbjct: 377 GMNQPHNGN 385
>emb|CAB71904.1| (AL138642) RAV-like protein [Arabidopsis thaliana]
Length = 299
Score = 32.8 bits (73), Expect = 6.3
Identities = 19/56 (33%), Positives = 27/56 (47%)
Frame = -2
Query: 975 SCTSDGLVVILRRARPQIPDAHNPQVPSINDRGVFAAPWAQQPFHAQYSHETFHNF 808
SC D L + RR RP+IPD H+ Q + P Q P + + +H +H F
Sbjct: 115 SCNKDKLYIDWRR-RPKIPDHHHQQFAGAMFPRFYTFPHPQMPTNYE-THNLYHRF 168
>gb|AAF47078.1| (AE003462) TBPH gene product [alt 1] [Drosophila melanogaster]
gb|AAF47079.1| (AE003462) TBPH gene product [alt 2] [Drosophila melanogaster]
Length = 530
Score = 32.8 bits (73), Expect = 6.3
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 471 GTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQH 292
GTA Y G Y ++ GY N+ N ++ + RQD G Q YN+ S+ H
Sbjct: 326 GTAGYGMGGNNYGGNSGGGYHNN--------GGNHSSGGNTNRQDGGSQ--YNSRQSNFH 375
Query: 291 QDGQHWSGN 265
Q +GN
Sbjct: 376 GMNQPHNGN 384
>pir||T06256 dormancy-associated protein 2 - garden pea
gb|AAB84194.1| (AF029243) dormancy-associated protein [Pisum sativum]
Length = 129
Score = 32.8 bits (73), Expect = 6.3
Identities = 21/66 (31%), Positives = 25/66 (37%)
Frame = -2
Query: 465 ADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQHQD 286
A Y YG G H GY N Y N HNG + G GY+N H
Sbjct: 42 AKYGGYGRGGGYHNGGGYHNGG----GGY--NGGGGYHNGGGGYNGGGGYHNGGGGYHNG 95
Query: 285 GQHWSG 268
G ++G
Sbjct: 96 GGGYNG 101
>gb|AAF55524.1| (AE003721) CG18599 gene product [Drosophila melanogaster]
Length = 526
Score = 32.8 bits (73), Expect = 6.3
Identities = 26/78 (33%), Positives = 36/78 (45%), Gaps = 2/78 (2%)
Frame = -2
Query: 516 SLHPQDSVSTDFSMEGTADYSSYGTGYQNHASNGYGNSWL--SQPSAYEQNQNAFAHNGR 343
SLH +++ D + Y+S N+ +NG NS S PS N ++ A NGR
Sbjct: 244 SLHDNNNIIGD---DNNKCYTSNPNNNNNNNNNGGSNSGNNNSSPSVNNFNCDSVAGNGR 300
Query: 342 QDHGGQAGYNNDPSHQHQDG 283
HGG + H HQ G
Sbjct: 301 YLHGG-----HQHPHPHQAG 315
>gb|AAF49754.1| (AE003535) CG6419 gene product [Drosophila melanogaster]
Length = 217
Score = 32.8 bits (73), Expect = 6.3
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Frame = -2
Query: 501 DSVSTDFSMEGTADYSSYGTGYQNHASNGYGNSWLSQPSA--------YEQNQNAFAHNG 346
+ +ST S+ G S Q H +G G L Q +A +Q+ H+
Sbjct: 3 ERLSTHLSLTGL----SLAHPLQTHLGSGGGTHHLGQLAAAVHQQQQQQQQSDQGLGHSH 58
Query: 345 RQDHGGQAGYNNDPSHQHQDGQHWSGNSREPATS 244
HG Q N+ H HQ QH + P +S
Sbjct: 59 HL-HGQQLSLNHQHHHPHQSPQHQQQHQHHPCSS 91
>ref|NP_055740.1| KIAA1002 protein
dbj|BAA76846.1| (AB023219) KIAA1002 protein [Homo sapiens]
Length = 840
Score = 32.8 bits (73), Expect = 6.3
Identities = 32/132 (24%), Positives = 49/132 (36%), Gaps = 8/132 (6%)
Frame = -2
Query: 1011 QLAPSVELEAVVSCTSDGLVVILRRARPQIPDAHNPQVP----SINDRGVFAAPWAQQPF 844
Q+ S + ++ CT+ ++ P +P Q P I+ + P+ Q
Sbjct: 252 QVTSSQSVRGLLPCTAQQQQQQQQQQLPALPPTPQQQPPLNNHMISQADDLSNPFGQMSL 311
Query: 843 HAQYSHETFHN----FQAPLAPQHMPLRSGIQATGGPPMDQLMQSIRDVAVFAWALCGIN 676
Q S E FQ PL QH S I A+ G P+
Sbjct: 312 SRQGSTEAADPSAALFQTPLISQHPQQTSFIMASTGQPLP-------------------T 352
Query: 675 GNIASYSHGQPSGEAQPPDG 616
N ++ SH P+ + PP G
Sbjct: 353 SNYSTSSHAPPTQQVLPPQG 372
>pir||S56750 single stranded D box binding factor 2 - chicken
Length = 353
Score = 32.5 bits (72), Expect = 8.2
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -2
Query: 471 GTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQH 292
G A ++ GY N+ + GYGN Q Y+Q + G D+ G Y P + +
Sbjct: 278 GGAQSQNWNQGYGNYWNQGYGN----QGYGYQQGYGGY---GGYDYSGYGYYGYGPGYDY 330
Query: 291 QDG 283
G
Sbjct: 331 SQG 333
>gb|AAF46035.1| (AE003434) CG15784 gene product [Drosophila melanogaster]
Length = 554
Score = 32.5 bits (72), Expect = 8.2
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 17/82 (20%)
Frame = -2
Query: 519 PSLHPQDSVSTDFSMEGTADYSSYGTGYQNHASNGYG---NSWLSQPSAYE----QNQNA 361
PS S S+ S ++ SS + + NGYG N W P + + +
Sbjct: 130 PSNTSSSSSSSSSSSSSSSSSSSSSSEDEEVFYNGYGWISNPWRRGPHGHHGFGRRLGHG 189
Query: 360 FAHNGRQDHG----------GQAGYNNDPSHQHQDGQHW 274
F H + HG G+ G++ P H H G H+
Sbjct: 190 FGHKHGRKHGHKHGHGPHHHGRHGHHGRPHHHHPHGHHF 228
>sp|P11898|GRP1_CHERU GLYCINE-RICH PROTEIN HC1
pir||S04069 glycine-rich protein - red goosefoot
emb|CAA32230.1| (X14067) glycine-rich protein (AA 1-144) rpt [Chenopodium rubrum]
Length = 144
Score = 32.5 bits (72), Expect = 8.2
Identities = 18/64 (28%), Positives = 25/64 (38%)
Frame = -2
Query: 459 YSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQHQDGQ 280
Y + G GY N G + Y + +NG H G GYNN H + G
Sbjct: 44 YHNGGGGYNNGGGYHNGGGGYNNGGGYHNGGGGY-NNGGGYHNGGGGYNNGGGHHNGGGG 102
Query: 279 HWSG 268
+ +G
Sbjct: 103 YNNG 106
>sp|P37703|GRP9_DAUCA GLYCINE-RICH PROTEIN DC9.1
pir||S35716 glycine-rich protein (clone DC 9.1), embryonic - carrot
Length = 144
Score = 32.5 bits (72), Expect = 8.2
Identities = 18/64 (28%), Positives = 25/64 (38%)
Frame = -2
Query: 459 YSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAGYNNDPSHQHQDGQ 280
Y + G GY N G + Y + +NG H G GYNN H + G
Sbjct: 44 YHNGGGGYNNGGGYHNGGGGYNNGGGYHNGGGGY-NNGGGYHNGGGGYNNGGGHHNGGGG 102
Query: 279 HWSG 268
+ +G
Sbjct: 103 YNNG 106
>gb|AAA63248.1| (M60502) profilaggrin [Homo sapiens]
Length = 797
Score = 32.5 bits (72), Expect = 8.2
Identities = 26/90 (28%), Positives = 42/90 (45%), Gaps = 2/90 (2%)
Frame = -2
Query: 498 SVSTDFSMEGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHGGQAG 319
SVS D +G ++ S +G + G SA EQ+++ H R H +AG
Sbjct: 274 SVSQDSDSQGHSEDSERRSGSASRNHRG---------SAQEQSRDGSRHP-RSHHEDRAG 323
Query: 318 YNNDPSHQHQDGQHWSGNSR--EPATSAEESR 229
+ + Q G H + NS + A+S E++R
Sbjct: 324 HGDSAESSRQSGTHHAENSSGGQAASSHEQAR 355
>gb|AAF45593.1| (AE003420) CG11381 gene product [Drosophila melanogaster]
Length = 454
Score = 32.5 bits (72), Expect = 8.2
Identities = 35/147 (23%), Positives = 53/147 (35%), Gaps = 4/147 (2%)
Frame = -2
Query: 663 SYSHGQPSGEAQPPDGLPIWDPTGEESSYEGPYNXXXXXXXXXXXXXQPSL-HPQDSVST 487
S+SHG P + D + YN P H Q V +
Sbjct: 70 SHSHGSPLDSSHQHD----------QQGPSNAYNSHHYPAQEQHGQGAPEHDHQQKEVDS 119
Query: 486 DFSMEGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHG--GQAGYN 313
+ + S+G QNH N Y + Q +Q + + +Q H GQ Y
Sbjct: 120 WQTALSQQQHESFGN-QQNH-QNAYNEGPVYQHYQGFNHQQHYGLSQQQQHESYGQEHYQ 177
Query: 312 NDPSH-QHQDGQHWSGNSREPATSAEESRDH 223
P+ QH QH + + EPA ++ + H
Sbjct: 178 QSPNQLQHHQSQHANEYAYEPAHFQQQQQHH 208
>emb|CAB58085.1| (AL121806) /prediction=(method:""genefinder"", version:""084"",
score:""71.76"")~/prediction=(method:""genscan"",
version:""1.0"") [Drosophila melanogaster]
Length = 692
Score = 32.5 bits (72), Expect = 8.2
Identities = 35/147 (23%), Positives = 53/147 (35%), Gaps = 4/147 (2%)
Frame = -2
Query: 663 SYSHGQPSGEAQPPDGLPIWDPTGEESSYEGPYNXXXXXXXXXXXXXQPSL-HPQDSVST 487
S+SHG P + D + YN P H Q V +
Sbjct: 52 SHSHGSPLDSSHQHD----------QQGPSNAYNSHHYPAQEQHGQGAPEHDHQQKEVDS 101
Query: 486 DFSMEGTADYSSYGTGYQNHASNGYGNSWLSQPSAYEQNQNAFAHNGRQDHG--GQAGYN 313
+ + S+G QNH N Y + Q +Q + + +Q H GQ Y
Sbjct: 102 WQTALSQQQHESFGN-QQNH-QNAYNEGPVYQHYQGFNHQQHYGLSQQQQHESYGQEHYQ 159
Query: 312 NDPSH-QHQDGQHWSGNSREPATSAEESRDH 223
P+ QH QH + + EPA ++ + H
Sbjct: 160 QSPNQLQHHQSQHANEYAYEPAHFQQQQQHH 190
Database: nr
Posted date: Sep 30, 2000 9:53 PM
Number of letters in database: 178,374,235
Number of sequences in database: 567,336
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387895499
Number of Sequences: 567336
Number of extensions: 9464390
Number of successful extensions: 29739
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 29582
Number of HSP's gapped (non-prelim): 141
length of query: 350
length of database: 178,374,235
effective HSP length: 54
effective length of query: 295
effective length of database: 147,738,091
effective search space: 43582736845
effective search space used: 43582736845
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)