Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA25105.1| (AB011823) translation initiation factor 3 ... 233 4e-60
sp|P78795|IF34_SCHPO PROBABLE EUKARYOTIC TRANSLATION INITIA... 231 1e-59
gb|AAB71866.1| (AF020833) eukaryotic translation initiation... 192 6e-48
gb|AAF14221.1|AF108214_1 (AF108214) eukaryotic translation ... 191 1e-47
ref|NP_058572.1| eukaryotic translation initiation factor 3... 190 2e-47
ref|NP_003746.1| eukaryotic translation initiation factor 3... 190 2e-47
gb|AAF00654.1|AC008153_6 (AC008153) putative eukaryotic tra... 168 1e-40
gb|AAF45796.1| (AE003424) CG8636 gene product [Drosophila m... 164 2e-39
gb|AAF55764.1| (AE003730) CG10881 gene product [Drosophila ... 154 1e-36
ref|NP_010717.1| translation initiation factor eIF3 subunit... 146 5e-34
dbj|BAB10805.1| (AB017060) eukaryotic translation initiatio... 132 8e-30
sp|Q19706|IF34_CAEEL PROBABLE EUKARYOTIC TRANSLATION INITIA... 121 1e-26
pir||T42420 hypothetical protein - fission yeast (Schizosac... 115 9e-25
gb|AAF21210.1|AC013483_34 (AC013483) putative RNA-binding p... 60 5e-08
emb|CAC03604.1| (AJ293800) SC35-like splicing factor SCL30a... 59 7e-08
gb|AAF17288.1|AF099940_1 (AF099940) Serine/arginine-rich pr... 58 2e-07
gb|AAF43415.1|AF232775_1 (AF232775) SR family splicing fact... 58 2e-07
emb|CAC03602.1| (AJ293798) SC35-like splicing factor SCL30,... 58 2e-07
pir||T24067 hypothetical protein R09B3.2 - Caenorhabditis e... 58 2e-07
sp|P30352|SFR2_CHICK SPLICING FACTOR, ARGININE/SERINE-RICH ... 57 3e-07
ref|NP_035488.1| splicing factor, arginine/serine-rich 2 (S... 57 3e-07
sp|Q62093|SFR2_MOUSE SPLICING FACTOR, ARGININE/SERINE-RICH ... 57 3e-07
emb|CAB75904.1| (AL132975) putative RNA binding protein [Ar... 57 3e-07
ref|NP_002130.1| RNA binding motif protein, X chromosome >g... 57 5e-07
ref|NP_035382.1| RNA binding motif protein, X chromosome >g... 57 5e-07
pir||S41766 heterogeneous nuclear ribonucleoprotein G - human 57 5e-07
pir||S43202 hnRNP G protein - human 57 5e-07
emb|CAB51361.1| (AJ237846) heterogeneous nuclear ribonucleo... 57 5e-07
pir||S58674 RNA-binding protein RbpD - Anabaena variabilis ... 56 6e-07
gb|AAG00575.1|AF288041_1 (AF288041) splicing factor arginin... 55 1e-06
dbj|BAA08403.1| (D49425) RNA-binding protein [Anabaena vari... 55 1e-06
pir||T23960 hypothetical protein R06C1.4 - Caenorhabditis e... 55 1e-06
gb|AAD00328.1| (U79567) RBM1 [Sminthopsis macroura] 55 1e-06
dbj|BAA97393.1| (AB023044) contains similarity to transcrip... 55 1e-06
pir||T09704 probable arginine/serine-rich splicing factor -... 55 2e-06
ref|NP_003007.1| splicing factor, arginine/serine-rich 2 >g... 54 2e-06
gb|AAB28794.1| 60 kda non-pathogenic specific antigen [Enta... 54 3e-06
emb|CAC03600.1| (AJ293796) splicing factor SC35 [Arabidopsi... 54 3e-06
dbj|BAB09851.1| (AB008268) contains similarity to splicing ... 54 3e-06
pir||T03586 glycine-rich RNA-binding protein 2 - rice >gi|2... 54 3e-06
pir||S58472 lysine-rich surface antigen - Entamoeba histoly... 54 3e-06
pir||S41505 12RNP2 protein - Synechococcus sp. (PCC 6301) >... 53 4e-06
dbj|BAA04177.1| (D17359) ss-DNA binding protein 12RNP2 prec... 53 5e-06
gb|AAD01997.1| (AF034741) heterogeneous nuclear ribonucleop... 53 5e-06
emb|CAA05727.1| (AJ002892) AtGRP2 [Arabidopsis thaliana] 53 5e-06
gb|AAF14355.1|AF113139_1 (AF113139) nucleolar protein Nop4 ... 53 5e-06
pir||T05254 probable RNA-binding protein F18A5.240 - Arabid... 53 5e-06
emb|CAB88326.1| (AL162459) RNA binding protein-like [Arabid... 53 5e-06
pir||S31443 glycine-rich RNA-binding protein (clone A81) - ... 53 5e-06
gb|AAD00327.1| (U79565) RBM1 [Macropus eugenii] 53 7e-06
gb|AAF04190.1|AC011560_31 (AC011560) hypothetical protein [... 53 7e-06
ref|NP_033059.1| RNA binding motif protein, X chromosome re... 53 7e-06
gb|AAC41383.1| (U71299) RNA-binding protein AxRNBP [Ambysto... 52 1e-05
sp|Q09511|SFR2_CAEEL PUTATIVE SPLICING FACTOR, ARGININE/SER... 52 2e-05
dbj|BAA77711.1| (AB003331) RNA binding protein [Anabaena va... 52 2e-05
dbj|BAB08354.1| (AB015475) contains similarity to RNA bindi... 51 2e-05
gb|AAB63831.1| (AC002337) putative FCA-related protein [Ara... 51 2e-05
gb|AAA27362.1| (L25435) RNA-binding protein [Synechococcus ... 51 3e-05
gb|AAB81555.1| (U36929) Rbm [Mus musculus] 51 3e-05
gb|AAF19004.1|AF151366_1 (AF151366) arginine/serine-rich pr... 51 3e-05
pir||T22767 hypothetical protein F56A8.6 - Caenorhabditis e... 51 3e-05
gb|AAD23688.1|AC006841_21 (AC006841) hypothetical protein [... 51 3e-05
dbj|BAA21408.1| (AB004535) hypothetical protein YPR112c [Sc... 50 4e-05
gb|AAG13056.1|AC011807_15 (AC011807) Putative Poly-A Bindin... 50 4e-05
dbj|BAA87307.1| (AB028003) Hypothetical protein YPR112c [Sc... 50 4e-05
ref|NP_055284.2| testes-specific heterogenous nuclear ribon... 50 4e-05
ref|NP_008951.1| U1-snRNP binding protein homolog (70kD) >g... 50 4e-05
emb|CAA05719.1| (AJ002763) P23 protein [Chironomus tentans]... 50 4e-05
gb|AAA16347.1| (L10911) splicing factor [Homo sapiens] 50 5e-05
ref|NP_004893.1| splicing factor (CC1.3) >gi|2136190|pir||I... 50 5e-05
gb|AAB16848.1| (U70731) putative poly(A)-binding protein Fa... 50 5e-05
gb|AAA85382.1| (L48548) RNA-binding protein [Synechococcus ... 50 5e-05
ref|NP_060577.1| hypothetical protein FLJ10482 >gi|7022544|... 50 5e-05
emb|CAA53660.1| (X76060) YRRM2 [Homo sapiens] 50 5e-05
pir||T15706 hypothetical protein C30B5.4 - Caenorhabditis e... 50 5e-05
gb|AAC41242.1| (AF017778) DAZ-like protein [Xenopus laevis] 50 6e-05
ref|NP_035383.1| RNA binding motif protein, Y chromosome, f... 50 6e-05
gb|AAD22102.1| (AF130355) Pad-1 [Neurospora crassa] 50 6e-05
dbj|BAB03001.1| (AP001297) glycine-rich RNA binding protein... 50 6e-05
sp|P20397|NUCL_XENLA NUCLEOLIN (PROTEIN C23) >gi|104148|pir... 50 6e-05
gb|AAF52478.1| (AE003616) CG11266 gene product [Drosophila ... 50 6e-05
pir||S56750 single stranded D box binding factor 2 - chicken 50 6e-05
ref|NP_001316.1| cleavage stimulation factor subunit 2 >gi|... 50 6e-05
gb|AAB50269.1| (U17394) polyadenylation factor 64 kDa subun... 50 6e-05
emb|CAB08591.1| (Z95327) Cleavage Stimulation Factor (CF-1,... 50 6e-05
pir||S56751 single stranded D box binding factor 1 - chicke... 50 6e-05
emb|CAB41262.1| (Z78021) CSTF2 (cleavage stimulation factor... 50 6e-05
gb|AAF82129.1|AF279289_1 (AF279289) testes-specific heterog... 49 8e-05
pir||S44025 RNA-binding protein - Anabaena sp >gi|7446351|p... 49 8e-05
gb|AAF67389.1| (AC007320) spermatogenesis factor AZF [Homo ... 49 8e-05
ref|NP_003810.1| poly(A)-binding protein, cytoplasmic 4 (in... 49 8e-05
pir||B49418 spermatogenesis factor AZF (clone MK29) - human 49 8e-05
ref|NP_001271.1| cold inducible RNA-binding protein >gi|592... 49 8e-05
pir||T05727 nucleic acid-binding protein - barley >gi|35504... 49 8e-05
ref|NP_031731.1| cold inducible RNA-binding protein >gi|616... 49 1e-04
sp|Q08473|SQD_DROME RNA-BINDING PROTEIN SQUID (HETEROGENEOU... 49 1e-04
pir||B41732 heterogeneous nuclear RNP protein clone pHRP40.... 49 1e-04
sp|P42731|PAB2_ARATH POLYADENYLATE-BINDING PROTEIN 2 (POLY(... 49 1e-04
pir||T24068 hypothetical protein R09B3.3 - Caenorhabditis e... 49 1e-04
pir||C41732 heterogeneous nuclear RNP protein clone pHRP40.... 49 1e-04
pir||A47369 RNA-binding protein (alternatively spliced) Sqd... 49 1e-04
ref|NP_015437.1| Mrd1p >gi|2132286|pir||S59777 hypothetical... 49 1e-04
pir||B47369 RNA-binding protein (alternatively spliced) Sqd... 49 1e-04
dbj|BAA08402.1| (D49424) RNA-binding protein [Anabaena vari... 49 1e-04
gb|AAF66823.1|AF190655_1 (AF190655) poly(A)-binding protein... 49 1e-04
dbj|BAA77713.1| (AB003332) RNA binding protein [Anabaena va... 49 1e-04
ref|NP_005049.1| RNA binding motif protein, Y chromosome, f... 49 1e-04
gb|AAF86232.1|AF248650_1 (AF248650) RNA-binding protein BRU... 49 1e-04
pir||S58673 RNA-binding protein RbpC - Anabaena variabilis ... 49 1e-04
gb|AAF53180.1| (AE003635) aret gene product [Drosophila mel... 48 1e-04
gb|AAB61993.1| (U73846) testis-specific RNP-type RNA bindin... 48 1e-04
gb|AAB58464.1| (U58976) bruno [Drosophila melanogaster] 48 1e-04
pir||S71780 RNA-binding protein sll0517 - Synechocystis sp.... 48 1e-04
sp|P17133|RU17_DROME U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 ... 48 1e-04
gb|AAF52471.1| (AE003615) snRNP70K gene product [Drosophila... 48 1e-04
gb|AAF47879.1| (AE003480) CG1316 gene product [Drosophila m... 48 2e-04
pir||S52491 polyadenylate binding protein II - human >gi|69... 48 2e-04
sp|Q10422|YDC1_SCHPO HYPOTHETICAL 33.6 KD PROTEIN C25G10.01... 48 2e-04
emb|CAB05388.1| (Z82989) FCA gamma [Arabidopsis thaliana] 48 2e-04
pir||E71429 probable FCA gamma - Arabidopsis thaliana >gi|2... 48 2e-04
sp|O04425|FCA_ARATH FLOWERING TIME CONTROL PROTEIN FCA >gi|... 48 2e-04
sp|P11940|PAB1_HUMAN POLYADENYLATE-BINDING PROTEIN 1 (POLY(... 48 2e-04
emb|CAB05392.1| (Z82992) FCA delta [Arabidopsis thaliana] >... 48 2e-04
emb|CAB05389.1| (Z82990) FCA delta [Arabidopsis thaliana] 48 2e-04
pir||T25186 hypothetical protein T23F6.4 - Caenorhabditis e... 48 2e-04
emb|CAA63557.1| (X92980) RNA-binding protein [Anabaena vari... 48 2e-04
pir||T38529 rna binding protein - fission yeast (Schizosacc... 48 2e-04
pir||S32644 nucleolin - African clawed frog >gi|295899|emb|... 48 2e-04
gb|AAD50314.1|AF176674_1 (AF176674) RNA-binding protein HuC... 48 2e-04
pir||T19389 hypothetical protein C18D11.4 - Caenorhabditis ... 48 2e-04
dbj|BAA88978.1| (AB025351) BFCIRP [Rana catesbeiana] 48 2e-04
emb|CAB56042.1| (AJ249323) glycine rich RNA binding protein... 48 2e-04
dbj|BAA95118.1| (AB032725) Etr-1 [Danio rerio] 48 2e-04
pir||S02061 heterogeneous ribonuclear particle protein A1.b... 47 3e-04
gb|AAG09816.1|AF278702_1 (AF278702) cold-inducible RNA bind... 47 3e-04
dbj|BAA04176.1| (D17358) ss-DNA binding protein 12RNP1 prec... 47 3e-04
pir||T06796 glycine-rich RNA-binding protein - garden pea >... 47 3e-04
gb|AAC16917.1| (U36610) Y-chromosome RNA recognition motif ... 47 3e-04
gb|AAF63202.1|AF240679_1 (AF240679) poly(A)-binding protein... 47 3e-04
ref|NP_062420.1| seb4 mRNA; seb4 protein >gi|481242|pir||S3... 47 3e-04
ref|NP_058089.1| RNA binding motif protein 3 >gi|6093936|sp... 47 3e-04
emb|CAB60891.1| (AL132885) predicted using Genefinder; prel... 47 3e-04
dbj|BAA77512.1| (AB026847) cold-inducible RNA-binding prote... 47 3e-04
pir||PS0381 polyadenylate-binding protein II - human (fragm... 47 3e-04
pir||S41504 12RNP1 protein - Synechococcus sp. (PCC 6301) 47 3e-04
emb|CAA18091.1| (AL022139) EG:65F1.2 [Drosophila melanogast... 47 4e-04
gb|AAF51177.1| (AE003581) Rbp9 gene product [alt 1] [Drosop... 47 4e-04
pir||A40252 elav protein - fruit fly (Drosophila virilis) 47 4e-04
gb|AAB25519.2| (S55886) RRM9 [Drosophila melanogaster] 47 4e-04
gb|AAC13645.1| (L04930) RNA-binding protein [Drosophila mel... 47 4e-04
emb|CAA77135.1| (Y18350) U2 snRNP auxiliary factor, large s... 47 4e-04
emb|CAA77136.1| (Y18351) U2 snRNP auxiliary factor, large s... 47 4e-04
gb|AAF60795.1| (AC024826) contains similarity to Pfam famil... 47 4e-04
sp|P16914|ELAV_DROME ELAV PROTEIN (EMBRYONIC LETHAL ABNORMA... 47 4e-04
pir||S20069 ribonucleoprotein A, 29K - wood tobacco >gi|197... 47 4e-04
sp|P23241|ELAV_DROVI ELAV PROTEIN >gi|157338|gb|AAA28505.1|... 47 4e-04
sp|P19683|RO31_NICSY 31 KD RIBONUCLEOPROTEIN, CHLOROPLAST P... 47 4e-04
gb|AAC13646.1| (L04930) RNA-binding protein [Drosophila mel... 47 4e-04
pir||S23780 nucleic acid-binding protein - maize >gi|168526... 47 4e-04
gb|AAF31733.1|AC020579_10 (AC020579) putative RNA-binding p... 47 4e-04
pir||S50765 RNA-binding protein - common ice plant >gi|3886... 47 4e-04
ref|NP_006734.1| RNA binding motif protein 3 >gi|1710620|sp... 47 4e-04
pir||S38382 SEB4D protein - human (fragment) 47 4e-04
gb|AAG01126.1|AF273333_11 (AF273333) BAC19.11 [Lycopersicon... 47 4e-04
pir||S46286 RNA-binding protein - wood tobacco >gi|624925|d... 47 4e-04
emb|CAA53063.1| (X75314) SEB4D [Homo sapiens] 47 4e-04
dbj|BAB08572.1| (AB015479) RNA-binding protein-like [Arabid... 47 4e-04
gb|AAF51178.1| (AE003581) Rbp9 gene product [alt 2] [Drosop... 47 4e-04
dbj|BAB09337.1| (AB016879) contains similarity to RNA-bindi... 47 4e-04
sp|O93235|CIRP_XENLA COLD-INDUCIBLE RNA-BINDING PROTEIN (GL... 46 5e-04
emb|CAA53064.1| (X75315) SEB4B [Homo sapiens] 46 5e-04
dbj|BAB09088.1| (AB025628) RNA-binding protein-like [Arabid... 46 5e-04
ref|NP_032800.1| poly A binding protein, cytoplasmic 1 >gi|... 46 5e-04
ref|NP_001410.1| ELAV (embryonic lethal, abnormal vision, D... 46 5e-04
dbj|BAB10366.1| (AB006696) contains similarity to RNA bindi... 46 5e-04
pir||T15047 RNA binding protein 3 - wood tobacco >gi|236675... 46 5e-04
pir||T16961 RNA-binding protein RGP-3 - wood tobacco (fragm... 46 5e-04
emb|CAA53824.1| (X76245) NOP77p [Saccharomyces cerevisiae] 46 5e-04
dbj|BAA77714.1| (AB003690) RNA-binding protein [Anabaena va... 46 5e-04
ref|NP_015282.1| RNA recognition motif-containing protein; ... 46 5e-04
gb|AAF55577.1| (AE003723) CstF-64 gene product [Drosophila ... 46 5e-04
pir||S38383 SEB4B protein - human (fragment) 46 5e-04
sp|P49313|RO30_NICPL 30 KD RIBONUCLEOPROTEIN, CHLOROPLAST P... 46 5e-04
gb|AAF16655.1|AC012394_4 (AC012394) putative RNA-binding pr... 46 5e-04
gb|AAD38787.1|AF153444_1 (AF153444) hnRNP A/B related prote... 46 5e-04
gb|AAD47839.1|AF170082_1 (AF170082) cleavage stimulation fa... 46 5e-04
pir||S44023 RNA-binding protein - Chlorogloeopsis sp >gi|30... 46 5e-04
pir||T06232 Ps16 protein - wheat >gi|2443390|dbj|BAA22411.1... 46 7e-04
gb|AAA81375.1| (U16800) ribonucleoprotein [Xenopus laevis] 46 7e-04
sp|P51992|RO32_XENLA HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEI... 46 7e-04
gb|AAC23648.2| (AC004684) putative RNA-binding protein [Ara... 46 7e-04
pir||S44024 RNA-binding protein - Anabaena sp >gi|304055|gb... 46 7e-04
emb|CAB41488.1| (AJ237848) putative FCA homologue [Brassica... 46 7e-04
pir||T05725 cp31AHv protein - barley >gi|3550467|emb|CAA064... 46 7e-04
pir||I39621 rbpA1 protein - Anabaena variabilis >gi|532033|... 46 7e-04
gb|AAF27665.1|AC018908_4 (AC018908) putative U2 snRNP auxil... 46 0.001
sp|O01671|SXL_MEGSC SEX-LETHAL PROTEIN HOMOLOG 46 0.001
emb|CAA04179.2| (AJ000546) Sex-lethal orthologous protein [... 46 0.001
emb|CAB16828.1| (Z99708) splicing factor-like protein [Arab... 46 0.001
emb|CAC01696.1| (AJ245662) sex-lethal homologue [Megaselia ... 46 0.001
ref|NP_037425.1| transformer-2 alpha (htra-2 alpha) >gi|403... 46 0.001
gb|AAC47508.1| (U18401) testis-specific-RRM-protein [Drosop... 46 0.001
gb|AAF54966.1| (AE003701) Rbp4 gene product [Drosophila mel... 46 0.001
gb|AAC78303.1| (AF064592) RNA-binding protein [Schistosoma ... 46 0.001
emb|CAB61832.1| (X98769) Sex-lethal orthologous protein [Me... 46 0.001
pir||S13513 heterogeneous ribonuclear particle protein A1 h... 46 0.001
sp|P21522|ROA1_SCHAM HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEI... 46 0.001
sp|Q05966|GR10_BRANA GLYCINE-RICH RNA-BINDING PROTEIN 10 >g... 46 0.001
ref|NP_035163.1| poly A binding protein, cytoplasmic 2 >gi|... 45 0.001
sp|Q28521|ROA1_MACMU HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEI... 45 0.001
gb|AAB70164.1| (AF001290) poly(A)-binding protein testis-sp... 45 0.001
gb|AAD49731.1|AF169290_1 (AF169290) hnRNP A2/B1 protein [Su... 45 0.001
ref|NP_002128.1| heterogeneous nuclear ribonucleoprotein A2... 45 0.001
ref|NP_058086.1| heterogeneous nuclear ribonucleoprotein A2... 45 0.001
gb|AAG12523.1|AC015446_4 (AC015446) Similar to Polyadenylat... 45 0.001
sp|P22626|ROA2_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEI... 45 0.001
emb|CAA78478.1| (Z14097) Negative growth regulatory protein... 45 0.001
gb|AAD50313.1|AF176673_1 (AF176673) RNA-binding protein HuA... 45 0.001
emb|CAC03601.1| (AJ293797) SC35-like splicing factor SCL28,... 45 0.001
ref|NP_009771.1| negative growth regulatory protein; Ngr1p ... 45 0.001
pir||S43599 Snf5 homolog R07E5.3 - Caenorhabditis elegans 45 0.001
emb|CAA83626.1| (Z32683) similar to RNA binding domain~cDNA... 45 0.001
sp|P51991|ROA3_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEI... 45 0.002
sp|P09651|ROA1_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEI... 45 0.002
ref|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1... 45 0.002
ref|NP_058944.1| heterogeneous nuclear ribonucleoprotein A1... 45 0.002
pir||T06817 RNA-binding protein - garden pea >gi|2330647|em... 45 0.002
ref|NP_005749.1| heterogeneous nuclear protein similar to r... 45 0.002
pir||F71890 hypothetical protein jhp0766 - Helicobacter pyl... 45 0.002
dbj|BAA13161.1| (D86728) TIS [Mus musculus] 45 0.002
pdb|1UP1| Up1, The Two Rna-Recognition Motif Domain Of H... 45 0.002
ref|NP_034615.1| HU-antigen A >gi|1655901|gb|AAB17967.1| (U... 45 0.002
dbj|BAA06519.1| (D31711) cp29 [Arabidopsis thaliana] 45 0.002
pir||S53490 RNA-binding protein cp29 precursor - Arabidopsi... 45 0.002
pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex 45 0.002
pdb|1HA1| Hnrnp A1 (Rbd1,2) From Homo Sapiens 45 0.002
emb|CAB67653.1| (AL132966) RNA-binding protein cp29 protein... 45 0.002
emb|CAB60356.1| (AL110485) cDNA EST yk345b8.5 comes from th... 45 0.002
sp|P09867|ROA1_BOVIN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEI... 45 0.002
gb|AAF81070.1|AF223427_1 (AF223427) RRM-containing protein ... 45 0.002
gb|AAG02117.1|AF293840_1 (AF293840) poly(A) binding protein... 45 0.002
emb|CAA72907.1| (Y12227) polyA binding protein PAB3 [Arabid... 45 0.002
gb|AAF43233.1|AC012654_17 (AC012654) Contains similarity to... 45 0.002
gb|AAB71977.1| (AC002292) putative RNA-binding protein [Ara... 45 0.002
dbj|BAA88269.1| (AB008022) RNA binding protein [Arabidopsis... 45 0.002
pir||T00768 polyadenylate-binding protein T22J18.7 - Arabid... 45 0.002
pir||T12196 RNA-binding protein - fava bean (fragment) >gi|... 45 0.002
ref|NP_004584.1| splicing factor, arginine/serine-rich (tra... 45 0.002
emb|CAB96420.1| (AJ271404) hypothetical protein [Xenopus la... 45 0.002
pir||S77263 RNA-binding protein ssr1480 - Synechocystis sp.... 45 0.002
>dbj|BAA25105.1| (AB011823) translation initiation factor 3 [Schizosaccharomyces
pombe]
Length = 280
Score = 233 bits (587), Expect = 4e-60
Identities = 133/279 (47%), Positives = 170/279 (60%), Gaps = 7/279 (2%)
Frame = -1
Query: 1003 DWADDDDVEETSTDLPEPQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVNPR 824
DWADD+D T LP QT N DGTKT+I FR DD+G+KVK R +R TE V
Sbjct: 6 DWADDEDY---GTGLPSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERVQHA 62
Query: 823 VADRKTWPKFGLSAKDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQLK 644
VA+RK W KFG A+ G TTSVGEN+ R + W ++++ + A K + K
Sbjct: 63 VAERKKWKKFGKEARKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAKVKAK 122
Query: 643 DKQV-KCRICNGQHFTARCPYKDTMAPIGE-----SGAADVAAGMGDEPXXXXXXXXXXX 482
V +CR C G HFTA+CPYK + P+ E S + A+G E
Sbjct: 123 GSSVVRCRACKGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGR--------- 173
Query: 481 SYVPPALRGNGSAGERMGSKFG-ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFL 305
Y+ P LR GS E S F ERDD ATLRVTN+S+ E ELRD+F RFG + RV+L
Sbjct: 174 -YIAPHLRA-GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYL 231
Query: 304 AKDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
AKD+ETG AKGFAF+S+ DR A+KA ++DG+G+ +LILR EF+K
Sbjct: 232 AKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSK 277
>sp|P78795|IF34_SCHPO PROBABLE EUKARYOTIC TRANSLATION INITIATION FACTOR 3 RNA-BINDING
SUBUNIT (EIF-3 RNA-BINDING SUBUNIT) (EIF3 P33)
(TRANSLATION INITIATION FACTOR EIF3, P33 SUBUNIT)
pir||T39767 eukaryotic translation initiation factor 3 rna-binding subunit -
fission yeast (Schizosaccharomyces pombe)
emb|CAA18400.1| (AL022304) eukaryotic translation initiation factor 3 rna-binding
subunit [Schizosaccharomyces pombe]
Length = 282
Score = 231 bits (583), Expect = 1e-59
Identities = 133/279 (47%), Positives = 169/279 (59%), Gaps = 7/279 (2%)
Frame = -1
Query: 1003 DWADDDDVEETSTDLPEPQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVNPR 824
DWADD+D T LP QT N DGTKT+I FR DD+G+KVK R +R TE V
Sbjct: 8 DWADDEDY---GTGLPSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERVQHA 64
Query: 823 VADRKTWPKFGLSAKDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQLK 644
VA+RK W KFG A G TTSVGEN+ R + W ++++ + A K + K
Sbjct: 65 VAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAKVKAK 124
Query: 643 DKQV-KCRICNGQHFTARCPYKDTMAPIGE-----SGAADVAAGMGDEPXXXXXXXXXXX 482
V +CR C G HFTA+CPYK + P+ E S + A+G E
Sbjct: 125 GSSVVRCRACKGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGR--------- 175
Query: 481 SYVPPALRGNGSAGERMGSKFG-ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFL 305
Y+ P LR GS E S F ERDD ATLRVTN+S+ E ELRD+F RFG + RV+L
Sbjct: 176 -YIAPHLRA-GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYL 233
Query: 304 AKDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
AKD+ETG AKGFAF+S+ DR A+KA ++DG+G+ +LILR EF+K
Sbjct: 234 AKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSK 279
>gb|AAB71866.1| (AF020833) eukaryotic translation initiation factor 3 subunit [Homo
sapiens]
gb|AAG15396.1|AF092453_1 (AF092453) TNF-a-inducible RNA binding protein [Homo sapiens]
gb|AAG15419.1|AF094850_1 (AF094850) TNFa-inducible RNA binding protein [Homo sapiens]
Length = 320
Score = 192 bits (483), Expect = 6e-48
Identities = 108/265 (40%), Positives = 149/265 (55%), Gaps = 6/265 (2%)
Frame = -1
Query: 961 LPEPQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVNPRVADRKTWPKFGLSA 782
LP P+ + N + KT+ ++ D+DG+K K VR R T + VA RK W KFG S
Sbjct: 53 LPPPKEVINGN-IKTVTEYKIDEDGKKFKIVRTFRI--ETRKASKAVARRKNWKKFGNSE 109
Query: 781 KDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQLKDKQVKCRICNGQHF 602
DPPGP TT+V +++ S+ + +++D M K V CRIC G H+
Sbjct: 110 FDPPGPNVATTTVSDDV----SMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHW 165
Query: 601 TARCPYKDTMAPIGESGAADVAAGMGD------EPXXXXXXXXXXXSYVPPALRGNGSAG 440
T RCPYKDT+ P+ + A + G+ E YVPP+LR S
Sbjct: 166 TTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRR 225
Query: 439 ERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFI 260
DD AT+RVTN+SE E +L+++F FG ++R++LAKD+ TG +KGFAFI
Sbjct: 226 GESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 285
Query: 259 SFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
SF R DA +A A + GFG+ HLIL VE+AK
Sbjct: 286 SFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
>gb|AAF14221.1|AF108214_1 (AF108214) eukaryotic translation initiation factor 3 p42 subunit
[Mus musculus]
Length = 320
Score = 191 bits (480), Expect = 1e-47
Identities = 107/265 (40%), Positives = 149/265 (55%), Gaps = 6/265 (2%)
Frame = -1
Query: 961 LPEPQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVNPRVADRKTWPKFGLSA 782
LP P+ + N + KT+ ++ ++DG+K K VR R T + VA RK W KFG S
Sbjct: 53 LPPPKEVINGN-IKTVTEYKIEEDGKKFKIVRTFRI--ETRKASKAVARRKNWKKFGNSE 109
Query: 781 KDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQLKDKQVKCRICNGQHF 602
DPPGP TT+V +++ S+ + +++D M K V CRIC G H+
Sbjct: 110 FDPPGPNVATTTVSDDV----SMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHW 165
Query: 601 TARCPYKDTMAPIGESGAADVAAGMGD------EPXXXXXXXXXXXSYVPPALRGNGSAG 440
T RCPYKDT+ P+ + A + G+ E YVPP+LR S
Sbjct: 166 TTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQSKTGKYVPPSLRDGASRR 225
Query: 439 ERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFI 260
DD AT+RVTN+SE E +L+++F FG ++R++LAKD+ TG +KGFAFI
Sbjct: 226 GESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 285
Query: 259 SFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
SF R DA +A A + GFG+ HLIL VE+AK
Sbjct: 286 SFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
>ref|NP_058572.1| eukaryotic translation initiation factor 3, subunit 4 (delta, 44
kDa)
sp|Q9Z1D1|IF34_MOUSE EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 4 (EIF-3 DELTA)
(EIF3 P44) (EIF-3 RNA-BINDING SUBUNIT)
gb|AAD00176.1| (U70733) eIF3-p44 [Mus musculus]
Length = 320
Score = 190 bits (479), Expect = 2e-47
Identities = 110/265 (41%), Positives = 152/265 (56%), Gaps = 7/265 (2%)
Frame = -1
Query: 961 LPEPQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVNPRVADRKTWPKFGLSA 782
LP P+ + N + KT+ ++ ++DG+K K VR R T + VA RK W KFG S
Sbjct: 53 LPPPKEVPNGN-IKTVTEYKIEEDGKKFKIVRTFRI--STRKASKAVARRKNWKKFGNSE 109
Query: 781 KDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQLKDKQVKCRICNGQHF 602
DPPGP TT+V +++ S+ + +++D M K V CRIC G H+
Sbjct: 110 FDPPGPNVATTTVSDDV----SMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHW 165
Query: 601 TARCPYKDTMAPIGESGAADVAAGMGD------EPXXXXXXXXXXXSYVPPALR-GNGSA 443
T RCPYKDT+ P+ + A + G+ E YVPP+LR G
Sbjct: 166 TTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQSKTGKYVPPSLRDGPARR 225
Query: 442 GERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAF 263
GE M DD AT+RVTN+SE E +L+++F FG ++R++LAKD+ TG +KGFAF
Sbjct: 226 GESMQPN-RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAF 284
Query: 262 ISFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
ISF R DA +A A + GFG+ HLIL VE+AK
Sbjct: 285 ISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316
>ref|NP_003746.1| eukaryotic translation initiation factor 3, subunit 4 (delta, 44kD)
sp|O75821|IF34_HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 4 (EIF-3 DELTA)
(EIF3 P44) (EIF-3 RNA-BINDING SUBUNIT) (EIF3 P42)
gb|AAC78728.1| (U96074) translation initiation factor eIF3 p44 subunit [Homo
sapiens]
Length = 320
Score = 190 bits (478), Expect = 2e-47
Identities = 107/265 (40%), Positives = 148/265 (55%), Gaps = 6/265 (2%)
Frame = -1
Query: 961 LPEPQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVNPRVADRKTWPKFGLSA 782
LP P+ + N + KT+ ++ D+DG+K K VR R T + VA RK W KFG S
Sbjct: 53 LPPPKEVINGN-IKTVTEYKIDEDGKKFKIVRTFRI--ETRKASKAVARRKNWKKFGNSE 109
Query: 781 KDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQLKDKQVKCRICNGQHF 602
DPPGP TT+V +++ S+ + +++D M K V CRIC G H+
Sbjct: 110 FDPPGPNVATTTVSDDV----SMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHW 165
Query: 601 TARCPYKDTMAPIGESGAADVAAGMGD------EPXXXXXXXXXXXSYVPPALRGNGSAG 440
T RCPYKDT+ P+ + A + G+ E YVPP+LR S
Sbjct: 166 TTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRR 225
Query: 439 ERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFI 260
DD AT+RVTN+SE E +L+++F FG ++R++LAKD+ TG +KGFAFI
Sbjct: 226 GESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 285
Query: 259 SFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
SF R D +A A + GFG+ HLIL VE+AK
Sbjct: 286 SFHRREDRARAIAGVSGFGYDHLILNVEWAK 316
>gb|AAF00654.1|AC008153_6 (AC008153) putative eukaryotic translation initiation factor 3
subunit; 21071-22901 [Arabidopsis thaliana]
emb|CAC01929.1| (AJ293728) translation initiation factor 3, subunit g (eIF3g)
[Arabidopsis thaliana]
Length = 294
Score = 168 bits (420), Expect = 1e-40
Identities = 105/280 (37%), Positives = 159/280 (56%), Gaps = 14/280 (5%)
Frame = -1
Query: 1009 KHDWADDDDVEETSTDLPEPQTIA-NKDGTKTIITFRYDDDGRKVKTVRRVRFITHTET- 836
K W + D+ E+ LP Q I +++G KT I ++++D+ KVK R R
Sbjct: 11 KFRWGEMDEDEDLDFLLPPKQVIGPDENGLKTTIEYKFNDEENKVKITTRTRVRKLASAR 70
Query: 835 VNPRVADRKTWPKFGLSAKDPPGPAPDTTSVGENIIFRPSVNWRKAEKDD-TADTATQTM 659
+N R +R+ WPKFG +A + G S E ++ RP KA++ T D +Q
Sbjct: 71 LNKRAMERRNWPKFGDAANEEAGSHLTMVSTEEILLERPRAPGTKADESKATGDGLSQLG 130
Query: 658 KDQLKDKQVKCRICN--GQHFTARCPYKDTMAPI---------GESGAADVAAGMGDEPX 512
K + CRIC+ G H+T++CPYKD AP GES A G G
Sbjct: 131 KGGAV--LMVCRICHKKGDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGK--- 185
Query: 511 XXXXXXXXXXSYVPPALRGNGSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFER 332
+YVPP++R G+ +GS R+D ++RVTN+SE E +L ++F
Sbjct: 186 ---------AAYVPPSMRA-GADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHP 235
Query: 331 FGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFA 170
FG VTRV++A D++TG+++GF F++F R DA +A K++G+G+ +LILRVE+A
Sbjct: 236 FGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>gb|AAF45796.1| (AE003424) CG8636 gene product [Drosophila melanogaster]
Length = 269
Score = 164 bits (410), Expect = 2e-39
Identities = 106/281 (37%), Positives = 153/281 (53%), Gaps = 4/281 (1%)
Frame = -1
Query: 1009 KHDWADDDDVEETSTDLPEPQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVN 830
K WAD+ VE LP P T ++G K + ++Y+ D +K K VR + + V
Sbjct: 8 KSSWADE--VELDYGGLP-PTTETVENGQKYVTEYKYNKDDKKTKVVRTYKI--SKQVVP 62
Query: 829 PRVADRKTWPKFGLSAKDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQ 650
VA R+TW KFG S D PGP TT V E II + +N ++ EK A + D
Sbjct: 63 KTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQ-FLNSKEDEK------ANDPLLDP 115
Query: 649 LKDKQVKCRICNGQHFTARCPYKDTMAPIG--ESGAADVAAGMGDEPXXXXXXXXXXXSY 476
K+ KCRICNG+H++ CPYK T E A+ AA D P Y
Sbjct: 116 TKNI-AKCRICNGEHWSVNCPYKGTAMDTNMMEKKASAAAAAAVDAPKSGK--------Y 166
Query: 475 VPPALRGN--GSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLA 302
VPP L+ + G+ G R RDD A +R++N+SE EA+L ++ ++ G ++++LA
Sbjct: 167 VPPFLKDSQKGALGMR------GRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLA 220
Query: 301 KDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
+D+ TG+ KGFA++ F R DA A ++G G+ HLIL VE++K
Sbjct: 221 RDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSK 265
>gb|AAF55764.1| (AE003730) CG10881 gene product [Drosophila melanogaster]
Length = 273
Score = 154 bits (386), Expect = 1e-36
Identities = 97/278 (34%), Positives = 148/278 (52%), Gaps = 4/278 (1%)
Frame = -1
Query: 1000 WADDDDVEETSTDLPEPQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVNPRV 821
WAD+ D + P + I K K + ++++DDG+KVK VR F + V V
Sbjct: 8 WADEVDADYVDGLPPSNEYI--KGDFKYVTEYKFNDDGKKVKVVRT--FKIEKQIVPKAV 63
Query: 820 ADRKTWPKFGLSAKDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQLKD 641
A R+ W KFG S D PGP TT E I + KD D +T D K+
Sbjct: 64 ARRRNWVKFGDSRSDKPGPNSQTTMASEEIFMQFI-----GSKD--FDQTHETQLDPGKN 116
Query: 640 KQVKCRICNGQHFTARCPYKDTMAP---IGESGAADVAAGMGDEPXXXXXXXXXXXSYVP 470
KCRICNG+H++ CPYK T + E+ A AA +P YVP
Sbjct: 117 I-AKCRICNGEHWSVNCPYKGTSMDSKTVMETKANAAAAAAISDPSKTGK-------YVP 168
Query: 469 PALR-GNGSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDR 293
P ++ G G +G + + +RDD + +R++N+SE E +L ++ ++ G T+++LA+++
Sbjct: 169 PFMKDGGGISGSKNWGRGRDRDDSSAVRISNLSESMTETDLEELVKKIGPHTKMYLAREK 228
Query: 292 ETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
+G+ KGFA++ F R DA A ++G G+ HLIL VE++K
Sbjct: 229 NSGLCKGFAYVHFKFRQDAAAAIEVLNGHGYDHLILCVEWSK 270
>ref|NP_010717.1| translation initiation factor eIF3 subunit; Tif35p
sp|Q04067|IF34_YEAST EUKARYOTIC TRANSLATION INITIATION FACTOR 3 RNA-BINDING SUBUNIT
(EIF-3 RNA-BINDING SUBUNIT) (EIF3 P33) (TRANSLATION
INITIATION FACTOR EIF3, P33 SUBUNIT)
pir||S69710 hypothetical protein YDR429c - yeast (Saccharomyces cerevisiae)
gb|AAB64884.1| (U33007) Ydr429cp; CAI: 0.25 [Saccharomyces cerevisiae]
gb|AAB82418.1| (AF004913) translation initiation factor 3 p33 subunit; Tif35p
[Saccharomyces cerevisiae]
Length = 274
Score = 146 bits (364), Expect = 5e-34
Identities = 89/267 (33%), Positives = 146/267 (54%), Gaps = 11/267 (4%)
Frame = -1
Query: 967 TDLPEPQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVNPRVADRKTWPKFGL 788
+++ + I N DG+++IIT++ +D G K K ++V+ + E V+ VA+RK W K+G
Sbjct: 2 SEVAPEEIIENADGSRSIITYKIED-GVKYKITQKVKEVKVLEKVHKSVAERKNWHKYGS 60
Query: 787 SAKDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQLKDKQVKCRICNGQ 608
P GP+ T +GE + R S NW++AE++ Q K L ++CR+C
Sbjct: 61 EKGSPAGPSAVTARLGEEVELRLSRNWKQAEEE-----RIQKEKASLTKTGLQCRLCGND 115
Query: 607 HFTARCPYKDTMAPIG-----ESGAADVAAGMGDEPXXXXXXXXXXXSYVPPALRGNGSA 443
H T CP+K ++ + + V A ++ YVPP+ R A
Sbjct: 116 HMTMNCPFKTILSELSALEDPATNEGGVEAASEEKAGQVGGAGSIPGQYVPPSRR----A 171
Query: 442 GERMGSKFG-----ERDDFATLRVTNVSEMAEEAELR-DMFERFGRVTRVFLAKDRETGM 281
G R S ERDD TL++ V+E A+E LR ++ F + RV + +++ETG
Sbjct: 172 GARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLREELLFPFAPIPRVSVVRNKETGK 231
Query: 280 AKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
++G AF++F+ A +A +DG G+ +LILRVE++K
Sbjct: 232 SRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSK 269
>dbj|BAB10805.1| (AB017060) eukaryotic translation initiation factor 3 subunit-like
protein [Arabidopsis thaliana]
Length = 308
Score = 132 bits (328), Expect = 8e-30
Identities = 89/277 (32%), Positives = 148/277 (53%), Gaps = 6/277 (2%)
Frame = -1
Query: 1000 WADDDDVEETSTD--LPEPQTIA-NKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVN 830
W + D+ EE D LP Q I+ +++G K +I ++++++ +KVK R +
Sbjct: 14 WGEIDE-EEGDYDFLLPPKQMISPDQNGVKKVIEYKFNEEDKKVKITTTTR--VQKRALT 70
Query: 829 PRVADRKTWPKFGLSAKDPPGPAPDTTSVGENIIFRPSVNWRKAEKDDTA-DTATQTMKD 653
+ +R++W KFG +A + S + I+ R AE+ + D+ +Q K
Sbjct: 71 KQAVERRSWNKFGDAAHEESSSYLTMRSTEDIILERIRAPGSNAEQSTVSGDSMSQLGKP 130
Query: 652 QLKDKQVKCRICN--GQHFTARCPYKDTMAPIGESGAADVAAGMGDEPXXXXXXXXXXXS 479
+ CR+C G H+T+RCP KD ++ + E A E +
Sbjct: 131 GAV--LMVCRLCQKKGDHWTSRCPQKDLLSLMDEPLTA--------ETSTSTITGTGRAA 180
Query: 478 YVPPALRGNGSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAK 299
YVPP++R G+ + GS R D ++RVTN+SE +L ++F FG VTR +A
Sbjct: 181 YVPPSMR-EGADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAI 239
Query: 298 DRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFA 170
D++T M++GF F+SF R DA +A K++G+G+ +LILRVE++
Sbjct: 240 DQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEWS 282
>sp|Q19706|IF34_CAEEL PROBABLE EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 4
(EIF-3 DELTA) (EIF3 P44) (EIF-3 RNA-BINDING SUBUNIT)
pir||T21238 hypothetical protein F22B5.2 - Caenorhabditis elegans
emb|CAA90354.1| (Z50044) similar to RNA binding protein~cDNA EST yk390d8.5 comes
from this gene~cDNA EST yk499d6.3 comes from this
gene~cDNA EST yk390d8.3 comes from this gene~cDNA EST
yk499d6.5 comes from this gene [Caenorhabditis elegans]
Length = 256
Score = 121 bits (301), Expect = 1e-26
Identities = 87/262 (33%), Positives = 127/262 (48%), Gaps = 1/262 (0%)
Frame = -1
Query: 952 PQTIANKDGTKTIITFRYDDDGRKVKTVRRVRFITHTETVNPRVADRKTWPKFGLSAKDP 773
P DGT+T F + DG + K V + + I + V VADRK W KFG +P
Sbjct: 20 PHIQEGADGTRTETAFT-EVDGVRWKVVTQFKVIN--KRVPKVVADRKKWVKFGSCKGEP 76
Query: 772 PGPAPDTTSVGENIIFRPSVNWRKAEKDDTADTATQTMKDQLKDKQVKCRICNGQ-HFTA 596
GP TT V E + + + N R E+ QT K ++ CR C G H++
Sbjct: 77 AGPQVATTYVAEEVDMQFTRN-RAGEQILDVQEDKQTAKTTSREH---CRHCKGNDHWST 132
Query: 595 RCPYKDTMAPIGESGAADVAAGMGDEPXXXXXXXXXXXSYVPPALRGNGSAGERMGSKFG 416
CPYK M + E AD + +R +G +R
Sbjct: 133 HCPYK-VMYQLDEEADAD---------------KDTEKDRMAMGMRPDGRQIDR------ 170
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
R D T RVTN+ + E ELRD+F + GRV R+F+A+D+ TG+ KGFAF++F R DA
Sbjct: 171 NRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDA 230
Query: 235 VKACAKMDGFGFKHLILRVEFAK 167
+A A+++ H++L+VE+ +
Sbjct: 231 ARAIAELNDIRMYHMVLKVEWTR 253
>pir||T42420 hypothetical protein - fission yeast (Schizosaccharomyces pombe)
(fragment)
dbj|BAA13806.1| (D89144) similar to Saccharomyces cerevisiae no definition line
found, GENEBANK Accession Number U33007
[Schizosaccharomyces pombe]
Length = 129
Score = 115 bits (285), Expect = 9e-25
Identities = 61/104 (58%), Positives = 77/104 (73%), Gaps = 1/104 (0%)
Frame = -1
Query: 478 YVPPALRGNGSAGERMGSKFG-ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLA 302
Y+ P LR GS E S F ERDD ATLRVTN+S+ E ELRD+F RFG + RV+LA
Sbjct: 23 YIAPHLRA-GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLA 81
Query: 301 KDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
KD+ETG AKGFAF+S+ DR A+KA ++DG+G+ +LILR EF+K
Sbjct: 82 KDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSK 126
>gb|AAF21210.1|AC013483_34 (AC013483) putative RNA-binding protein [Arabidopsis thaliana]
Length = 143
Score = 59.7 bits (142), Expect = 5e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = -1
Query: 394 LRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKM 215
L + +S +E L+D F FG V V +A D+ +G ++GF F+ FA+ GDA+ A M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 214 DGFGFKHLILRVEFA 170
DG G LR+ FA
Sbjct: 103 DGKGLLGRPLRISFA 117
>emb|CAC03604.1| (AJ293800) SC35-like splicing factor SCL30a, 30a kD [Arabidopsis
thaliana]
Length = 261
Score = 59.3 bits (141), Expect = 7e-08
Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Frame = -1
Query: 478 YVPPALRGNGSAGER---MGSKFGERD-DFAT-LRVTNVSEMAEEAELRDMFERFGRVTR 314
Y P RG G G G G RD D T L V N+ + +LR FE+FG V
Sbjct: 6 YTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKD 65
Query: 313 VFLAKDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAKK 164
++L +D TG +GF FI F D DA +A +MDG+ L V FA++
Sbjct: 66 IYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEE 115
>gb|AAF17288.1|AF099940_1 (AF099940) Serine/arginine-rich protein [Arabidopsis thaliana]
emb|CAC03603.1| (AJ293799) SC35-like splicing factor SCL33, 33 kD [Arabidopsis
thaliana]
Length = 287
Score = 58.2 bits (138), Expect = 2e-07
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Frame = -1
Query: 478 YVPPALRGNGSAGERMG--SKFG--ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRV 311
Y P RG G G ++G RD +L V N+ + +LR FE+FG V +
Sbjct: 6 YTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDI 65
Query: 310 FLAKDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAKK 164
+L +D TG +GF F+ F D DA A MDG+ L V FA++
Sbjct: 66 YLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEE 114
>gb|AAF43415.1|AF232775_1 (AF232775) SR family splicing factor SC35 [Drosophila melanogaster]
gb|AAF53192.1| (AE003636) CG5442 gene product [alt 2] [Drosophila melanogaster]
Length = 195
Score = 57.8 bits (137), Expect = 2e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Frame = -1
Query: 457 GNGSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMA 278
G G+ G D +L+V N++ +LR +FER G V +++ +DR T +
Sbjct: 4 GGGAGGLGAARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 63
Query: 277 KGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAK 167
+GFAF+ F D+ DA A MDG LRV+ A+
Sbjct: 64 RGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMAR 100
>emb|CAC03602.1| (AJ293798) SC35-like splicing factor SCL30, 30 kD [Arabidopsis
thaliana]
Length = 262
Score = 57.8 bits (137), Expect = 2e-07
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Frame = -1
Query: 472 PPALRG---NGSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLA 302
PP RG G G R GS G +L V N+ ELR+ FERFG V V++
Sbjct: 26 PPPRRGYGGGGGGGGRRGSSHG------SLLVRNIPLDCRPEELREPFERFGPVRDVYIP 79
Query: 301 KDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAKKAQ 158
+D +G +GFAF+ F D DA +A M+ F + V A +++
Sbjct: 80 RDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFSGREITVVVASESR 127
>pir||T24067 hypothetical protein R09B3.2 - Caenorhabditis elegans
emb|CAB03236.1| (Z81108) similar to RNA recognition motif. (aka RRM, RBD, or RNP
domain)~cDNA EST yk64g6.5 comes from this gene~cDNA EST
yk257f10.5 comes from this gene~cDNA EST yk51e12.3 comes
from this gene~cDNA EST yk51e12.5 comes from this
gene~cDNA EST yk60f9.3 c>
Length = 83
Score = 57.8 bits (137), Expect = 2e-07
Identities = 31/75 (41%), Positives = 40/75 (53%)
Frame = -1
Query: 388 VTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDG 209
V N E EL + F G++ V + DRETG +GFAFI FA+ G A +A +M+G
Sbjct: 9 VGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNG 68
Query: 208 FGFKHLILRVEFAKK 164
F LRV A K
Sbjct: 69 AEFNGRPLRVNLANK 83
>sp|P30352|SFR2_CHICK SPLICING FACTOR, ARGININE/SERINE-RICH 2 (SPLICING FACTOR SC35)
(SC-35) (SPLICING COMPONENT, 35 KD) (PR264 PROTEIN)
pir||B42701 PR264 protein - chicken
emb|CAA44306.1| (X62446) PR 264 [Gallus gallus]
prf||1805195A RNA-binding protein PR264 [Gallus gallus]
Length = 221
Score = 57.4 bits (136), Expect = 3e-07
Identities = 30/81 (37%), Positives = 47/81 (57%)
Frame = -1
Query: 409 DDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVK 230
+ +L+V N++ LR +FE++GRV V++ +DR T ++GFAF+ F D+ DA
Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70
Query: 229 ACAKMDGFGFKHLILRVEFAK 167
A MDG LRV+ A+
Sbjct: 71 AMDAMDGAVLDGRELRVQMAR 91
>ref|NP_035488.1| splicing factor, arginine/serine-rich 2 (SC-35)
pir||A42701 PR264/SC35 protein - human
emb|CAA44307.1| (X62447) PR 264 [Homo sapiens]
emb|CAA53383.1| (X75755) PR264/SC35 [Homo sapiens]
gb|AAC71000.1| (AF077858) splicing factor SC35 [Mus musculus]
prf||1805195B RNA-binding protein PR264 [Homo sapiens]
Length = 221
Score = 57.4 bits (136), Expect = 3e-07
Identities = 30/81 (37%), Positives = 47/81 (57%)
Frame = -1
Query: 409 DDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVK 230
+ +L+V N++ LR +FE++GRV V++ +DR T ++GFAF+ F D+ DA
Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70
Query: 229 ACAKMDGFGFKHLILRVEFAK 167
A MDG LRV+ A+
Sbjct: 71 AMDAMDGAVLDGRELRVQMAR 91
>sp|Q62093|SFR2_MOUSE SPLICING FACTOR, ARGININE/SERINE-RICH 2 (SPLICING FACTOR SC35)
(SC-35) (SPLICING COMPONENT, 35 KD) (PR264 PROTEIN)
emb|CAA67134.1| (X98511) PR264/SC35 [Mus musculus]
Length = 121
Score = 57.4 bits (136), Expect = 3e-07
Identities = 30/81 (37%), Positives = 47/81 (57%)
Frame = -1
Query: 409 DDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVK 230
+ +L+V N++ LR +FE++GRV V++ +DR T ++GFAF+ F D+ DA
Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70
Query: 229 ACAKMDGFGFKHLILRVEFAK 167
A MDG LRV+ A+
Sbjct: 71 AMDAMDGAVLDGRELRVQMAR 91
>emb|CAB75904.1| (AL132975) putative RNA binding protein [Arabidopsis thaliana]
Length = 309
Score = 57.4 bits (136), Expect = 3e-07
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Frame = -1
Query: 472 PPALRG---NGSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLA 302
PP RG G G R GS G +L V N+ ELR+ FERFG V V++
Sbjct: 26 PPPRRGYGGGGGGGGRRGSSHG------SLLVRNIPLDCRPEELREPFERFGPVRDVYIP 79
Query: 301 KDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAKKAQ 158
+D +G +GFAF+ F D DA +A M+ F + V A +++
Sbjct: 80 RDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 127
>ref|NP_002130.1| RNA binding motif protein, X chromosome
sp|P38159|ROG_HUMAN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G (HNRNP G) (GLYCOPROTEIN
P43)
emb|CAA80599.1| (Z23064) hnRNP G protein [Homo sapiens]
Length = 391
Score = 56.6 bits (134), Expect = 5e-07
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D L + ++ E L +F ++GR+ V L KDRET ++GFAF++F DA
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKKAQ*KGGR 143
A M+G ++VE A K + GR
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFESGR 93
>ref|NP_035382.1| RNA binding motif protein, X chromosome
emb|CAB51362.1| (AJ237847) heterogeneous nuclear ribonucleoprotein G [Mus musculus]
Length = 391
Score = 56.6 bits (134), Expect = 5e-07
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D L + ++ E L +F ++GR+ V L KDRET ++GFAF++F DA
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKKAQ*KGGR 143
A M+G ++VE A K + GR
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFESGR 93
>pir||S41766 heterogeneous nuclear ribonucleoprotein G - human
Length = 437
Score = 56.6 bits (134), Expect = 5e-07
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D L + ++ E L +F ++GR+ V L KDRET ++GFAF++F DA
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKKAQ*KGGR 143
A M+G ++VE A K + GR
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFESGR 93
>pir||S43202 hnRNP G protein - human
Length = 437
Score = 56.6 bits (134), Expect = 5e-07
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D L + ++ E L +F ++GR+ V L KDRET ++GFAF++F DA
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKKAQ*KGGR 143
A M+G ++VE A K + GR
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFESGR 93
>emb|CAB51361.1| (AJ237846) heterogeneous nuclear ribonucleoprotein G [Mus musculus]
Length = 289
Score = 56.6 bits (134), Expect = 5e-07
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D L + ++ E L +F ++GR+ V L KDRET ++GFAF++F DA
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKKAQ*KGGR 143
A M+G ++VE A K + GR
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPSFESGR 93
>pir||S58674 RNA-binding protein RbpD - Anabaena variabilis (fragment)
Length = 93
Score = 56.2 bits (133), Expect = 6e-07
Identities = 32/77 (41%), Positives = 43/77 (55%)
Frame = -1
Query: 397 TLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAK 218
T+ V N+S A EAEL+ +F +G V RV L DRETG +GFAF+ + A +
Sbjct: 1 TIYVGNLSYRATEAELKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITE 60
Query: 217 MDGFGFKHLILRVEFAK 167
+DG + LRV AK
Sbjct: 61 LDGAEWMGRQLRVNKAK 77
>gb|AAG00575.1|AF288041_1 (AF288041) splicing factor arginine/serine rich 2 [Oryzias latipes]
Length = 211
Score = 55.4 bits (131), Expect = 1e-06
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = -1
Query: 397 TLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAK 218
+L+V N++ LR +FE++GRV V++ +DR + ++GFAF+ F D+ DA A
Sbjct: 1 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYSKESRGFAFVRFFDKRDAEDAMDA 60
Query: 217 MDGFGFKHLILRVEFAK 167
MDG LRV+ A+
Sbjct: 61 MDGALLDGRELRVQMAR 77
>dbj|BAA08403.1| (D49425) RNA-binding protein [Anabaena variabilis]
Length = 94
Score = 55.0 bits (130), Expect = 1e-06
Identities = 31/77 (40%), Positives = 43/77 (55%)
Frame = -1
Query: 397 TLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAK 218
T+ V N+S A EA+L+ +F +G V RV L DRETG +GFAF+ + A +
Sbjct: 2 TIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITE 61
Query: 217 MDGFGFKHLILRVEFAK 167
+DG + LRV AK
Sbjct: 62 LDGAEWMGRQLRVNKAK 78
>pir||T23960 hypothetical protein R06C1.4 - Caenorhabditis elegans
emb|CAB03222.1| (Z81106) predicted using Genefinder~similar to RNA recognition
motif. (aka RRM, RBD, or RNP domain)~cDNA EST yk479b7.5
comes from this gene~cDNA EST yk206f8.3 comes from this
gene~cDNA EST yk206f8.5 comes from this gene~cDNA EST
yk222a10.3 comes from t>
Length = 84
Score = 55.0 bits (130), Expect = 1e-06
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = -1
Query: 388 VTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDG 209
V NV E E+ + F G V V + DRETG +GFAF+ F++ A +A +++G
Sbjct: 10 VGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNG 69
Query: 208 FGFKHLILRVEFAKK 164
F LRV +A K
Sbjct: 70 VAFNGRNLRVNYANK 84
>gb|AAD00328.1| (U79567) RBM1 [Sminthopsis macroura]
Length = 390
Score = 55.0 bits (130), Expect = 1e-06
Identities = 31/90 (34%), Positives = 45/90 (49%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D L + ++ E L +F ++GR+ V L KDRET ++GFAFI+F DA
Sbjct: 3 EADRPGKLFIGGLNTETNEKGLESVFGKYGRIVEVLLMKDRETNKSRGFAFITFESPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKKAQ*KGG 146
A M+G ++VE A K + G
Sbjct: 63 KDAARDMNGKSLDGKSIKVEQATKPSFESG 92
>dbj|BAA97393.1| (AB023044) contains similarity to transcription or splicing
factor~gene_id:MWD22.25 [Arabidopsis thaliana]
Length = 804
Score = 55.0 bits (130), Expect = 1e-06
Identities = 48/158 (30%), Positives = 73/158 (45%), Gaps = 15/158 (9%)
Frame = -1
Query: 634 VKCRIC-NGQHFTARCPYKDTMAPIGESGAADVAAGMGDEPXXXXXXXXXXXSYVPPAL- 461
V C+IC +G H T CP K T + + A +G + P +
Sbjct: 387 VLCKICGDGGHPTIDCPVKGTTGKKMDDEYQNFLAELGGTVPESSLKQSATLALGPGSSG 446
Query: 460 --------RGNG-SAGERMGSKF----GERDDFATLRVTNVSEMAEEAELRDMFERFGRV 320
GNG SA +GS + D L + + M E+ L ++F FG +
Sbjct: 447 SNPPWANNAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEI 506
Query: 319 TRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAKKA 161
+ KDR TG++KG+ F+ +AD A A M+G+ F+ L V A K+
Sbjct: 507 VMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKS 559
>pir||T09704 probable arginine/serine-rich splicing factor - alfalfa
emb|CAA76346.1| (Y16672) putative arginine/serine-rich splicing factor [Medicago
sativa]
Length = 286
Score = 54.7 bits (129), Expect = 2e-06
Identities = 27/80 (33%), Positives = 47/80 (58%)
Frame = -1
Query: 406 DFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKA 227
D +L V N++ +L +F+++G+V +F+ KDR TG ++GFAF+ + +A KA
Sbjct: 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKA 73
Query: 226 CAKMDGFGFKHLILRVEFAK 167
++DG + V+FAK
Sbjct: 74 VDRLDGRMVDGREITVQFAK 93
>ref|NP_003007.1| splicing factor, arginine/serine-rich 2
sp|Q01130|SFR2_HUMAN SPLICING FACTOR, ARGININE/SERINE-RICH 2 (SPLICING FACTOR SC35)
(SC-35) (SPLICING COMPONENT, 35 KD) (PR264 PROTEIN)
pir||A42634 splicing factor SC35 - human
gb|AAA60306.1| (M90104) splicing factor [Homo sapiens]
Length = 221
Score = 54.3 bits (128), Expect = 2e-06
Identities = 29/81 (35%), Positives = 46/81 (55%)
Frame = -1
Query: 409 DDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVK 230
+ +L+V N++ LR +FE++ RV V++ +DR T ++GFAF+ F D+ DA
Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYRRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70
Query: 229 ACAKMDGFGFKHLILRVEFAK 167
A MDG LRV+ A+
Sbjct: 71 AMDAMDGAVLDGRELRVQMAR 91
>gb|AAB28794.1| 60 kda non-pathogenic specific antigen [Entamoeba histolytica, SAW
1734R, Peptide Partial, 273 aa]
Length = 273
Score = 53.9 bits (127), Expect = 3e-06
Identities = 29/74 (39%), Positives = 40/74 (53%)
Frame = -1
Query: 388 VTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDG 209
+TN+ E E R F+RFG + + L D+ T +KGF + F DAVKAC +MD
Sbjct: 185 ITNLPFNCTEDEFRKEFDRFGNIAEIHLPIDKITKKSKGFGKVLFVVPQDAVKACNEMDN 244
Query: 208 FGFKHLILRVEFAK 167
K I+ V +AK
Sbjct: 245 KFIKGRIVHVTYAK 258
Score = 42.2 bits (97), Expect = 0.010
Identities = 24/74 (32%), Positives = 40/74 (53%)
Frame = -1
Query: 388 VTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDG 209
+ N+ E A+E L+ FE+FG +T + + + G+++ F FI F + A A KM+G
Sbjct: 1 IKNLPERADEKILKQQFEKFGGITDCKVMRTPQ-GVSRKFGFIGFENEDQAQTAITKMNG 59
Query: 208 FGFKHLILRVEFAK 167
+ L+V AK
Sbjct: 60 AYIQSSKLQVSLAK 73
>emb|CAC03600.1| (AJ293796) splicing factor SC35 [Arabidopsis thaliana]
Length = 303
Score = 53.9 bits (127), Expect = 3e-06
Identities = 27/80 (33%), Positives = 47/80 (58%)
Frame = -1
Query: 406 DFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKA 227
D +L V N++ +L +F ++G+V VF+ +DR TG ++GFAF+ + + +A KA
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 226 CAKMDGFGFKHLILRVEFAK 167
++DG + V+FAK
Sbjct: 74 VERLDGRVVDGREITVQFAK 93
>dbj|BAB09851.1| (AB008268) contains similarity to splicing factor~gene_id:MSJ1.4
[Arabidopsis thaliana]
Length = 303
Score = 53.9 bits (127), Expect = 3e-06
Identities = 27/80 (33%), Positives = 47/80 (58%)
Frame = -1
Query: 406 DFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKA 227
D +L V N++ +L +F ++G+V VF+ +DR TG ++GFAF+ + + +A KA
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 226 CAKMDGFGFKHLILRVEFAK 167
++DG + V+FAK
Sbjct: 74 VERLDGRVVDGREITVQFAK 93
>pir||T03586 glycine-rich RNA-binding protein 2 - rice
emb|CAA05729.1| (AJ002894) OsGRP2 [Oryza sativa]
Length = 150
Score = 53.9 bits (127), Expect = 3e-06
Identities = 34/100 (34%), Positives = 48/100 (48%)
Frame = -1
Query: 463 LRGNGSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETG 284
L + SAG R L V +S + L++ F FG VT + DRE+G
Sbjct: 16 LTSSASAGSSPAMFNAARLMSTKLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESG 75
Query: 283 MAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFAKK 164
++GF F+SFA+ DA A MDG + +RV FA +
Sbjct: 76 RSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNFANE 115
>pir||S58472 lysine-rich surface antigen - Entamoeba histolytica
emb|CAA56649.1| (X80479) surface antigen [Entamoeba histolytica]
Length = 294
Score = 53.9 bits (127), Expect = 3e-06
Identities = 29/74 (39%), Positives = 40/74 (53%)
Frame = -1
Query: 388 VTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDG 209
+TN+ E E R F+RFG + + L D+ T +KGF + F DAVKAC +MD
Sbjct: 190 ITNLPFNCTEDEFRKEFDRFGNIAEIHLPIDKITKKSKGFGKVLFVVPQDAVKACNEMDN 249
Query: 208 FGFKHLILRVEFAK 167
K I+ V +AK
Sbjct: 250 KFIKGRIVHVTYAK 263
Score = 42.2 bits (97), Expect = 0.010
Identities = 24/74 (32%), Positives = 40/74 (53%)
Frame = -1
Query: 388 VTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDG 209
+ N+ E A+E L+ FE+FG +T + + + G+++ F FI F + A A KM+G
Sbjct: 6 IKNLPERADEKILKQQFEKFGGITDCKVMRTPQ-GVSRKFGFIGFENEDQAQTAITKMNG 64
Query: 208 FGFKHLILRVEFAK 167
+ L+V AK
Sbjct: 65 AYIQSSKLQVSLAK 78
>pir||S41505 12RNP2 protein - Synechococcus sp. (PCC 6301)
dbj|BAA09863.1| (D63794) 12kDa RNA-binding, 12RNP2 [Synechococcus sp.]
Length = 100
Score = 53.5 bits (126), Expect = 4e-06
Identities = 30/77 (38%), Positives = 45/77 (57%)
Frame = -1
Query: 397 TLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAK 218
T+ V N+S A E ++R++F +G V+RV L DRETG +GFAFI + A ++
Sbjct: 2 TIYVGNLSFRATEEDVREVFAEYGPVSRVSLPDDRETGRLRGFAFIEMEEDAHEDAAISE 61
Query: 217 MDGFGFKHLILRVEFAK 167
+DG + LRV A+
Sbjct: 62 LDGAEWFGRQLRVSKAR 78
>dbj|BAA04177.1| (D17359) ss-DNA binding protein 12RNP2 precursor [Synechococcus
PCC6301]
Length = 100
Score = 53.1 bits (125), Expect = 5e-06
Identities = 30/77 (38%), Positives = 45/77 (57%)
Frame = -1
Query: 397 TLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAK 218
T+ V N+S A E ++R++F +G V+RV L DRETG +GFAFI + A ++
Sbjct: 2 TIYVGNLSFRATEEDVREVFAEYGPVSRVSLPVDRETGRLRGFAFIEMEEDAHEDAAISE 61
Query: 217 MDGFGFKHLILRVEFAK 167
+DG + LRV A+
Sbjct: 62 LDGAEWFGRQLRVSKAR 78
>gb|AAD01997.1| (AF034741) heterogeneous nuclear ribonucleoprotein G [Macropus
eugenii]
Length = 394
Score = 53.1 bits (125), Expect = 5e-06
Identities = 32/90 (35%), Positives = 45/90 (49%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D L V ++ E L +F ++GR+ V L KDRET ++GFAFI+F DA
Sbjct: 3 EADRPGKLFVGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETSKSRGFAFITFESPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKKAQ*KGG 146
A M+G ++VE A K + G
Sbjct: 63 KDAARDMNGKLLDGKSIKVEQATKPTFESG 92
>emb|CAA05727.1| (AJ002892) AtGRP2 [Arabidopsis thaliana]
Length = 150
Score = 53.1 bits (125), Expect = 5e-06
Identities = 26/62 (41%), Positives = 37/62 (58%)
Frame = -1
Query: 394 LRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKM 215
L + +S ++A LRD F FG V + DRETG ++GF F++F D G A A ++M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 214 DG 209
DG
Sbjct: 97 DG 98
>gb|AAF14355.1|AF113139_1 (AF113139) nucleolar protein Nop4 [Eremothecium gossypii]
Length = 167
Score = 53.1 bits (125), Expect = 5e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Frame = -1
Query: 406 DFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKA 227
D TL V N+ A +AEL D F +F + + KD G ++GF F+SFA D A
Sbjct: 15 DLKTLFVRNIPFDATDAELTDFFSQFAPIKHAVIVKDN-AGSSRGFGFVSFAVESDTQAA 73
Query: 226 CAKMDGFGFKHLILRVEFAKKAQ 158
K FK +LRV+ AK+ +
Sbjct: 74 LDKGRKTQFKGRLLRVDVAKRRE 96
>pir||T05254 probable RNA-binding protein F18A5.240 - Arabidopsis thaliana
emb|CAB36849.1| (AL035528) glycine-rich RNA-binding protein AtGRP2-like
[Arabidopsis thaliana]
emb|CAB78427.1| (AL161537) glycine-rich RNA-binding protein AtGRP2-like
[Arabidopsis thaliana]
Length = 158
Score = 53.1 bits (125), Expect = 5e-06
Identities = 26/62 (41%), Positives = 37/62 (58%)
Frame = -1
Query: 394 LRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKM 215
L + +S ++A LRD F FG V + DRETG ++GF F++F D G A A ++M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 214 DG 209
DG
Sbjct: 97 DG 98
>emb|CAB88326.1| (AL162459) RNA binding protein-like [Arabidopsis thaliana]
Length = 102
Score = 53.1 bits (125), Expect = 5e-06
Identities = 30/81 (37%), Positives = 42/81 (51%)
Frame = -1
Query: 400 ATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACA 221
A L V+ +S + LR +F FG++ L +D ET KGF FI+F DA KA
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 220 KMDGFGFKHLILRVEFAKKAQ 158
+DG ++ VE AK A+
Sbjct: 67 SLDGKIVDGRLIFVEVAKNAE 87
>pir||S31443 glycine-rich RNA-binding protein (clone A81) - Arabidopsis thaliana
(fragment)
emb|CAA49174.1| (X69377) glycine-rich RNA-binding protein [Arabidopsis thaliana]
Length = 139
Score = 53.1 bits (125), Expect = 5e-06
Identities = 26/62 (41%), Positives = 37/62 (58%)
Frame = -1
Query: 394 LRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKM 215
L + +S ++A LRD F FG V + DRETG ++GF F++F D G A A ++M
Sbjct: 18 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 77
Query: 214 DG 209
DG
Sbjct: 78 DG 79
>gb|AAD00327.1| (U79565) RBM1 [Macropus eugenii]
Length = 402
Score = 52.7 bits (124), Expect = 7e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = -1
Query: 397 TLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAK 218
TL + ++ E +L +F ++G + +V L KD+ET ++GFAF++F A A
Sbjct: 8 TLFIGGLNVGTNEKDLESVFGKYGHIVKVLLMKDQETNKSRGFAFVTFESPAAAKDAARD 67
Query: 217 MDGFGFKHLILRVEFAKKAQ*KGGR 143
M+G ++VE A K + GR
Sbjct: 68 MNGKALDGKSIKVEQANKPSFESGR 92
>gb|AAF04190.1|AC011560_31 (AC011560) hypothetical protein [Arabidopsis thaliana]
Length = 261
Score = 52.7 bits (124), Expect = 7e-06
Identities = 26/73 (35%), Positives = 39/73 (52%)
Frame = -1
Query: 430 GSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFA 251
G G +TL V+N+ +++ +F FG+V RV + KDR T ++G AF+ +
Sbjct: 47 GGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYV 106
Query: 250 DRGDAVKACAKMD 212
R DA KA MD
Sbjct: 107 SREDAAKAARSMD 119
>ref|NP_033059.1| RNA binding motif protein, X chromosome retrogene
sp|O35479|ROG_MOUSE HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G (HNRNP G)
gb|AAB86639.1| (AF031568) heterogeneous nuclear ribonucleoprotein G [Mus musculus]
Length = 388
Score = 52.7 bits (124), Expect = 7e-06
Identities = 29/91 (31%), Positives = 45/91 (48%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D L + ++ E L +F ++GR+ + L KDRET ++GFAF++ DA
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKKAQ*KGGR 143
A M+G ++VE A K + GR
Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPFFESGR 93
>gb|AAC41383.1| (U71299) RNA-binding protein AxRNBP [Ambystoma mexicanum]
Length = 144
Score = 51.9 bits (122), Expect = 1e-05
Identities = 33/102 (32%), Positives = 48/102 (46%)
Frame = -1
Query: 406 DFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKA 227
D L V +S + E L F ++G V + KDRETG ++GF F++F + DA +A
Sbjct: 5 DEGKLFVGGLSFDSNEHSLESAFSKYGDVCDAVVVKDRETGRSRGFGFVTFRNPSDAKEA 64
Query: 226 CAKMDGFGFKHLILRVEFAKKAQ*KGGRXXXXXXXXXXXLGG 101
M+G +RV+ A K+ GGR GG
Sbjct: 65 LHAMNGESLDGRQIRVDLAGKSS-GGGRGGGGGGYRGGSGGG 105
>sp|Q09511|SFR2_CAEEL PUTATIVE SPLICING FACTOR, ARGININE/SERINE-RICH 2 (SPLICING FACTOR
SC35) (SC-35) (SPLICING COMPONENT, 35 KD)
pir||T15917 hypothetical protein EEED8.7 - Caenorhabditis elegans
gb|AAC46767.1| (U23484) similar to splicing factor S35 (SP:SC35_HUMAN, Q01130) and
other proteins necessary for splicing of pre-mRNA
[Caenorhabditis elegans]
Length = 196
Score = 51.5 bits (121), Expect = 2e-05
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Frame = -1
Query: 451 GSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKG 272
G G+R + + + +L++ N+S +LR FER+G + V + +D+ + +KG
Sbjct: 4 GGGGDRRAAP--DINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKG 61
Query: 271 FAFISFADRGDAVKACAKMDGFGFKHLILRVEFAK---KAQ*KGGR 143
F F+ F +R DA A + DG LRV AK + +GGR
Sbjct: 62 FGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGR 107
>dbj|BAA77711.1| (AB003331) RNA binding protein [Anabaena variabilis]
Length = 99
Score = 51.5 bits (121), Expect = 2e-05
Identities = 28/85 (32%), Positives = 43/85 (49%)
Frame = -1
Query: 397 TLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAK 218
++ V N+S + +L +F +G VTRV L DRETG +GF F+ A
Sbjct: 2 SIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQA 61
Query: 217 MDGFGFKHLILRVEFAKKAQ*KGGR 143
+DG + +L+V A+ + KG R
Sbjct: 62 LDGAEWMGRVLKVNKARPREEKGAR 86
>dbj|BAB08354.1| (AB015475) contains similarity to RNA binding
protein~gene_id:MMN10.9 [Arabidopsis thaliana]
Length = 112
Score = 51.2 bits (120), Expect = 2e-05
Identities = 27/82 (32%), Positives = 43/82 (51%)
Frame = -1
Query: 403 FATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKAC 224
F+ + +S + LR +F FG++T L KD++T KGF FI+F DA KA
Sbjct: 20 FSNCSLAGLSAYTTDQSLRQLFAPFGQITESRLIKDQQTQRPKGFGFITFESEDDAQKAL 79
Query: 223 AKMDGFGFKHLILRVEFAKKAQ 158
++G ++ VE AK+ +
Sbjct: 80 KALNGKIVNGRLIFVETAKEVE 101
>gb|AAB63831.1| (AC002337) putative FCA-related protein [Arabidopsis thaliana]
Length = 324
Score = 51.2 bits (120), Expect = 2e-05
Identities = 34/110 (30%), Positives = 59/110 (52%), Gaps = 5/110 (4%)
Frame = -1
Query: 472 PPALRGNGSAGERMGSKFGERDD--FATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAK 299
PP+ G S +R + D A L V +S+ A E ++R +FE++G VT + L K
Sbjct: 84 PPSPCGGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPK 143
Query: 298 DRETGMAKGFAFISF--ADRGD-AVKACAKMDGFGFKHLILRVEFAKKAQ*KGGR 143
D+ TG + FI + + G+ A+ A + F + L ++V FA+ + + G+
Sbjct: 144 DKMTGERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGK 198
>gb|AAA27362.1| (L25435) RNA-binding protein [Synechococcus sp.]
Length = 100
Score = 50.8 bits (119), Expect = 3e-05
Identities = 29/77 (37%), Positives = 44/77 (56%)
Frame = -1
Query: 397 TLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAK 218
T+ V N+S A E ++R++F +G V+RV L DRETG + FAFI + A ++
Sbjct: 2 TIYVGNLSFRATEEDVREVFAEYGPVSRVSLPVDRETGRLRAFAFIEMEEDAHEDAAISE 61
Query: 217 MDGFGFKHLILRVEFAK 167
+DG + LRV A+
Sbjct: 62 LDGAEWFGRQLRVSKAR 78
>gb|AAB81555.1| (U36929) Rbm [Mus musculus]
Length = 380
Score = 50.8 bits (119), Expect = 3e-05
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D + + ++ + L+++F RFG V RV L +DRET ++GFAF++F DA
Sbjct: 3 ETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKK 164
A +M+G ++V+ A++
Sbjct: 63 KNAVKEMNGVILDGKRIKVKQARR 86
>gb|AAF19004.1|AF151366_1 (AF151366) arginine/serine-rich protein [Arabidopsis thaliana]
gb|AAG10821.1|AC011808_9 (AC011808) arginine/serine-rich protein [Arabidopsis thaliana]
Length = 414
Score = 50.8 bits (119), Expect = 3e-05
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Frame = -1
Query: 469 PALRGNG-----SAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFL 305
PA RG S G SK ++ L V ++S EA L+++F FG V V +
Sbjct: 71 PARRGRSPPPPPSKGASSPSKKAVQESLV-LHVDSLSRNVNEAHLKEIFGNFGEVIHVEI 129
Query: 304 AKDRETGMAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEF 173
A DR + +G ++ F R DA KA MDG +++ F
Sbjct: 130 AMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
>pir||T22767 hypothetical protein F56A8.6 - Caenorhabditis elegans
emb|CAB05746.1| (Z83230) similar to RNA recognition motif. (aka RRM, RBD, or RNP
domain)~cDNA EST yk474h4.3 comes from this gene~cDNA EST
yk505c10.3 comes from this gene~cDNA EST yk474h4.5 comes
from this gene~cDNA EST yk336e2.3 comes from this
gene~cDNA EST yk336e2.5>
Length = 336
Score = 50.8 bits (119), Expect = 3e-05
Identities = 31/98 (31%), Positives = 46/98 (46%)
Frame = -1
Query: 463 LRGNGSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETG 284
+ G +G+ +R F V N+S E +R +F + G V + + DRETG
Sbjct: 1 MMSGGYKSSGVGNDRSQRSVF----VGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETG 56
Query: 283 MAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFA 170
KG+ FI F D A A ++G+ ILRV+ A
Sbjct: 57 KPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVDSA 94
>gb|AAD23688.1|AC006841_21 (AC006841) hypothetical protein [Arabidopsis thaliana]
Length = 1003
Score = 50.8 bits (119), Expect = 3e-05
Identities = 30/98 (30%), Positives = 53/98 (53%)
Frame = -1
Query: 463 LRGNGSAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETG 284
++GN ++G + G + L + N+ A+ ++++ +F G V VF+ K+ ETG
Sbjct: 311 VKGNLIWARQLGGE-GSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETG 369
Query: 283 MAKGFAFISFADRGDAVKACAKMDGFGFKHLILRVEFA 170
+ KGFAF+ F + DA A K +G F + V++A
Sbjct: 370 LPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
Score = 36.7 bits (83), Expect = 0.45
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -1
Query: 400 ATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACA 221
AT+ V+ + A+L + F G V R FL ++ + +GFAF+ FA + D +A
Sbjct: 20 ATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIE 79
Query: 220 KMDG 209
+G
Sbjct: 80 LKNG 83
>dbj|BAA21408.1| (AB004535) hypothetical protein YPR112c [Schizosaccharomyces pombe]
Length = 833
Score = 50.4 bits (118), Expect = 4e-05
Identities = 27/76 (35%), Positives = 45/76 (58%)
Frame = -1
Query: 394 LRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKM 215
L + N++ E +L+ +F FG++ +V + D++T KGFA+I F D DAV+A ++
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 214 DGFGFKHLILRVEFAK 167
D F+ +L V AK
Sbjct: 385 DAKPFQGRLLHVLPAK 400
Score = 38.7 bits (88), Expect = 0.12
Identities = 26/81 (32%), Positives = 47/81 (57%), Gaps = 5/81 (6%)
Frame = -1
Query: 448 SAGERMGSKFGERDDFATLRVTNVSEMAEEAELRDMFERF-GRVTRVFLAKD--RETG-- 284
+ E++G++ E D AT+ V N++ ++ E + +F+ G ++ V AK + G
Sbjct: 603 TTSEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKY 662
Query: 283 MAKGFAFISFADRGDAVKACAKMDGF 206
++ GF F+ F D+ AV A M+GF
Sbjct: 663 LSMGFGFVEFKDKASAVAAMHAMNGF 688
>gb|AAG13056.1|AC011807_15 (AC011807) Putative Poly-A Binding Protein [Arabidopsis thaliana]
Length = 671
Score = 50.4 bits (118), Expect = 4e-05
Identities = 32/92 (34%), Positives = 47/92 (50%)
Frame = -1
Query: 418 GERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGD 239
GE+ F + V N+SE + EL +F FG T + +D E G +KGF F++F + D
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDD 276
Query: 238 AVKACAKMDGFGFKHLILRVEFAKKAQ*KGGR 143
A +A ++G F + F KAQ K R
Sbjct: 277 AARAVDALNGKTFDD---KEWFVGKAQKKSER 305
>dbj|BAA87307.1| (AB028003) Hypothetical protein YPR112c [Schizosaccharomyces pombe]
Length = 160
Score = 50.4 bits (118), Expect = 4e-05
Identities = 27/76 (35%), Positives = 45/76 (58%)
Frame = -1
Query: 394 LRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKM 215
L + N++ E +L+ +F FG++ +V + D++T KGFA+I F D DAV+A ++
Sbjct: 22 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 81
Query: 214 DGFGFKHLILRVEFAK 167
D F+ +L V AK
Sbjct: 82 DAKPFQGRLLHVLPAK 97
>ref|NP_055284.2| testes-specific heterogenous nuclear ribonucleoprotein G-T
gb|AAC24858.2| (AF069682) testes specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 50.4 bits (118), Expect = 4e-05
Identities = 28/84 (33%), Positives = 42/84 (49%)
Frame = -1
Query: 415 ERDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDA 236
E D L + ++ +E L F ++GR+ V L KDRET ++GFAF++F DA
Sbjct: 3 EADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 235 VKACAKMDGFGFKHLILRVEFAKK 164
A M+G ++V A K
Sbjct: 63 KAAARDMNGKSLDGKAIKVAQATK 86
>ref|NP_008951.1| U1-snRNP binding protein homolog (70kD)
pir||G02371 U1-snRNP binding protein homolog - human
gb|AAA86654.1| (U44798) U1-snRNP binding protein homolog [Homo sapiens]
gb|AAA86655.1| (U44799) U1-snRNP binding protein homolog [Homo sapiens]
Length = 246
Score = 50.4 bits (118), Expect = 4e-05
Identities = 26/87 (29%), Positives = 46/87 (51%)
Frame = -1
Query: 409 DDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVK 230
D TL V ++ +E +L+++F R+G + R+ L +D TG +KG+AFI + + +K
Sbjct: 48 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 107
Query: 229 ACAKMDGFGFKHLILRVEFAKKAQ*KG 149
A DG + V++ + KG
Sbjct: 108 AYRDADGLVIDQHEIFVDYELERTLKG 134
>emb|CAA05719.1| (AJ002763) P23 protein [Chironomus tentans]
emb|CAA06034.1| (AJ003820) hnRNP protein [Chironomus tentans]
Length = 191
Score = 50.4 bits (118), Expect = 4e-05
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Frame = -1
Query: 388 VTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDG 209
V N+++ ++ +L + F RFG++ V+LA + GFAFI FA++ +A+ AC ++G
Sbjct: 11 VGNLTDKVKKEQLEEEFTRFGKLNSVWLAHN-----PPGFAFIEFANKDEAISACDSLNG 65
Query: 208 FGFKHLILRVEFAK---KAQ*KGGR 143
LRVE +K ++ +GGR
Sbjct: 66 QELLGSKLRVEISKGKGRSNSRGGR 90
>gb|AAA16347.1| (L10911) splicing factor [Homo sapiens]
Length = 530
Score = 50.0 bits (117), Expect = 5e-05
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = -1
Query: 361 EAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDGF 206
E LR +FE FGR+ + L D ETG +KG+ FI+F+D A KA +++GF
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
>ref|NP_004893.1| splicing factor (CC1.3)
pir||I55595 splicing factor - human
gb|AAA16346.1| (L10910) splicing factor [Homo sapiens]
Length = 524
Score = 50.0 bits (117), Expect = 5e-05
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = -1
Query: 361 EAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKACAKMDGF 206
E LR +FE FGR+ + L D ETG +KG+ FI+F+D A KA +++GF
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
>gb|AAB16848.1| (U70731) putative poly(A)-binding protein FabM [Aspergillus
nidulans]
Length = 705
Score = 50.0 bits (117), Expect = 5e-05
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = -1
Query: 427 SKFGE-RDDFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFA 251
SKF E + +F + + N+ E+ E R +FE+FG +T L++D E G ++GF F++F+
Sbjct: 213 SKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS