The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.

BLASTX 2.1.1 [Aug-8-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig445.seq Contig445
         (648 letters)

Database: nr
           565,281 sequences; 177,575,912 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA06044.1|  (D28917) polyprotein [Hepatitis C virus]          33  3.5
emb|CAA54244.1|  (X76918) viral coding region [Hepatitis C v...    33  3.5
dbj|BAA04609.1|  (D17763) polyprotein [Hepatitis C virus]          33  3.5
gb|AAC03058.1|  (AF046866) polyprotein [Hepatitis C virus]         33  3.5
emb|CAC09673.1|  (AX031595) unnamed protein product [unident...    33  3.5
pir||PC1303  genome polyprotein core/E1 region (isolate HD10...    33  3.5
pir||PC1304  genome polyprotein core/E1 region (isolate BR36...    33  3.5
pir||PC2061  genome polyprotein N2 - hepatitis C virus >gi|4...    33  3.5
dbj|BAA03257.1|  (D14311) polyprotein precursor [Hepatitis C...    33  3.5
dbj|BAA03251.1|  (D14305) polyprotein precursor [Hepatitis C...    33  3.5
dbj|BAA03253.1|  (D14307) polyprotein precursor [Hepatitis C...    33  3.5
pir||S41288  genome polyprotein - hepatitis C virus (fragment)     33  3.5
gb|AAA67820.1|  (L39297) precursor protein [Hepatitis C viru...    33  3.5
gb|AAA67835.1|  (L39312) precursor protein [Hepatitis C viru...    33  3.5
gb|AAA67821.1|  (L39298) precursor protein [Hepatitis C viru...    33  3.5
sp|P29027|CHI2_RHIOL  CHITINASE 2 PRECURSOR >gi|422047|pir||...    32  4.6
pir||T16210  hypothetical protein F30H5.3 - Caenorhabditis e...    32  6.0

>dbj|BAA06044.1| (D28917) polyprotein [Hepatitis C virus]
          Length = 3021

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 169 LPGCSFSIFLLALFSCLIHPAASLE 193



>emb|CAA54244.1| (X76918) viral coding region [Hepatitis C virus]
          Length = 3021

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 169 LPGCSFSIFLLALFSCLIHPAASLE 193



>dbj|BAA04609.1| (D17763) polyprotein [Hepatitis C virus]
          Length = 3021

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 169 LPGCSFSIFLLALFSCLIHPAASLE 193



>gb|AAC03058.1| (AF046866) polyprotein [Hepatitis C virus]
          Length = 3021

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 169 LPGCSFSIFLLALFSCLIHPAASLE 193



>emb|CAC09673.1| (AX031595) unnamed protein product [unidentified]
 emb|CAC09750.1| (AX031865) unnamed protein product [unidentified]
 emb|CAC09826.1| (AX032135) unnamed protein product [unidentified]
          Length = 180

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 30  LPGCSFSIFLLALFSCLIHPAASLE 54



>pir||PC1303 genome polyprotein core/E1 region (isolate HD10-2) - hepatitis C
           virus (strain type 3) (fragment)
 dbj|BAA03452.1| (D14603) core protein-envelope 1 protein [Hepatitis C virus]
 emb|CAC09671.1| (AX031591) unnamed protein product [unidentified]
 emb|CAC09748.1| (AX031861) unnamed protein product [unidentified]
 emb|CAC09824.1| (AX032131) unnamed protein product [unidentified]
          Length = 180

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 30  LPGCSFSIFLLALFSCLIHPAASLE 54



>pir||PC1304 genome polyprotein core/E1 region (isolate BR36-9) - hepatitis C
           virus (strain type 3) (fragment)
 dbj|BAA03448.1| (D14599) core protein-envelope 1 protein [Hepatitis C virus]
 emb|CAC09674.1| (AX031597) unnamed protein product [unidentified]
 emb|CAC09675.1| (AX031599) unnamed protein product [unidentified]
 emb|CAC09751.1| (AX031867) unnamed protein product [unidentified]
 emb|CAC09752.1| (AX031869) unnamed protein product [unidentified]
 emb|CAC09827.1| (AX032137) unnamed protein product [unidentified]
 emb|CAC09828.1| (AX032139) unnamed protein product [unidentified]
          Length = 180

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 30  LPGCSFSIFLLALFSCLIHPAASLE 54



>pir||PC2061 genome polyprotein N2 - hepatitis C virus
 gb|AAA20155.1| (L12355) structural region [Hepatitis C virus]
          Length = 411

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 169 LPGCSFSIFLLALFSCLIHPAASLE 193



>dbj|BAA03257.1| (D14311) polyprotein precursor [Hepatitis C virus]
          Length = 503

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 169 LPGCSFSIFLLALFSCLIHPAASLE 193



>dbj|BAA03251.1| (D14305) polyprotein precursor [Hepatitis C virus]
          Length = 503

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 169 LPGCSFSIFLLALFSCLIHPAASLE 193



>dbj|BAA03253.1| (D14307) polyprotein precursor [Hepatitis C virus]
          Length = 503

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 169 LPGCSFSIFLLALFSCLIHPAASLE 193



>pir||S41288 genome polyprotein - hepatitis C virus (fragment)
          Length = 492

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 169 LPGCSFSIFLLALFSCLIHPAASLE 193



>gb|AAA67820.1| (L39297) precursor protein [Hepatitis C virus type 3]
 prf||2116349BF core-e1 protein [Hepatitis C virus]
          Length = 149

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 10  LPGCSFSIFLLALFSCLIHPAASLE 34



>gb|AAA67835.1| (L39312) precursor protein [Hepatitis C virus type 3a]
 prf||2116349BX core-e1 protein [Hepatitis C virus]
          Length = 149

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 10  LPGCSFSIFLLALFSCLIHPAASLE 34



>gb|AAA67821.1| (L39298) precursor protein [Hepatitis C virus type 3a]
 prf||2116349BG core-e1 protein [Hepatitis C virus]
          Length = 149

 Score = 32.8 bits (73), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 VPTCAFGLFFIYLFSCTLHEVLSLE 486
           +P C+F +F + LFSC +H   SLE
Sbjct: 10  LPGCSFSIFLLALFSCLIHPAASLE 34



>sp|P29027|CHI2_RHIOL CHITINASE 2 PRECURSOR
 pir||B47022 chitinase (EC 3.2.1.14) II - Rhizopus oligosporus
 dbj|BAA01022.1| (D10158) chitinase [Rhizopus microsporus var. oligosporus]
          Length = 542

 Score = 32.5 bits (72), Expect = 4.6
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
 Frame = +3

Query: 27  LLHSTNNTRS--KHTSPNKPPTANMKFXXXXXXXXXXXXXXXPSGCKPGT--------YS 176
           L+HS  +T      +S  K  T                    P  C            Y+
Sbjct: 310 LVHSGGSTPPPPSSSSATKTTTKTTATSTKTTTTTAPTATSTPGSCPVANQPCSTQNQYA 369

Query: 177 CTPDKSGWQVCDVTSQWVAAGVCPPKTGCVFYKKSASPYC 296
           CT D   + VCD   +WVA+  CP  T C+     AS YC
Sbjct: 370 CTADGK-YAVCD-HGKWVASS-CPSNTVCIPTTDGASIYC 406



>pir||T16210 hypothetical protein F30H5.3 - Caenorhabditis elegans
 gb|AAA68408.1| (U29096) coded for by C. elegans cDNA CEESI50F; coded for by C.
            elegans cDNA CEESU96F;  similar to C. elegans proteins
            ZC84.1 and ZC84.6 ; also similar to serine protease
            inhibitors (members of BPTI/Kunitz family of inhibitors)
            [Caenorhabditis elegans]
          Length = 1599

 Score = 32.1 bits (71), Expect = 6.0
 Identities = 21/46 (45%), Positives = 24/46 (51%), Gaps = 14/46 (30%)
 Frame = +3

Query: 159  KPGTYSCTP------DKSGWQVCDVTSQWVAAGV--------CPPKTGCVFYKKSASPYC 296
            KP T+S  P      D     VCD  S +V  G         CP    C F KKS + YC
Sbjct: 1389 KPSTFSSKPNGKEDGDDEAADVCDRGSAYVVNGTPKQCTASPCPSGYKCTFSKKSKNYYC 1448



  Database: nr
    Posted date:  Sep 29, 2000  9:53 PM
  Number of letters in database: 177,575,912
  Number of sequences in database:  565,281
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.270   0.0470 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 204673194
Number of Sequences: 565281
Number of extensions: 4098161
Number of successful extensions: 11218
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11200
Number of HSP's gapped (non-prelim): 20
length of query: 216
length of database: 177,575,912
effective HSP length: 52
effective length of query: 163
effective length of database: 148,181,300
effective search space: 24153551900
effective search space used: 24153551900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 69 (31.3 bits)