The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.1.1 [Aug-8-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig549.seq Contig549
(1444 letters)
Database: nr
565,281 sequences; 177,575,912 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA20038.1| (D88734) membrane glycoprotein [Equine herp... 40 0.053
ref|NP_041080.1| membrane glycoprotein >gi|138350|sp|P28968... 40 0.053
dbj|BAA20037.1| (D88733) membrane glycoprotein [Equine herp... 39 0.091
ref|NP_012284.1| cell surface flocculin with structure simi... 34 5.3
emb|CAB96113.1| (AJ243287) SE6 [Papillomavirus sylvilagi] 33 6.9
ref|NP_061564.1| Orf68 >gi|8895169|gb|AAF80827.1| (AF165214... 33 6.9
gb|AAB91538.1| (U91410) LE6 protein [Cottontail rabbit papi... 33 6.9
gb|AAA17405.1| (U01028) 190-kDa antigen (rOmpA) [Rickettsia... 33 9.0
>dbj|BAA20038.1| (D88734) membrane glycoprotein [Equine herpesvirus 1]
Length = 867
Score = 40.2 bits (92), Expect = 0.053
Identities = 33/134 (24%), Positives = 41/134 (29%)
Frame = -2
Query: 819 SATTQS*SKLTESPP*NSALPPTARQPSPYXXXXXXXXXXXXXXXXXXXXXXXXREVPNS 640
S TT S S T SPP S+ PPT+ S +P S
Sbjct: 44 SGTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTS 103
Query: 639 ESELQRRTVPCRSKPAAQTSTANLYTPPMASSRTSRATVFGLRITPALRMCKSRSRVVTS 460
S T P S T+TA T ++ T+ A+ T A S T
Sbjct: 104 TSTETTTTTPTASTTTPTTTTAAPTTAATTTAVTTAAST-SAETTTATATATSTPTTTTP 162
Query: 459 LRLLPLATFVLVPT 418
VPT
Sbjct: 163 TSTTTTTATTTVPT 176
>ref|NP_041080.1| membrane glycoprotein
sp|P28968|VGLX_HSVEB GLYCOPROTEIN X PRECURSOR
pir||VGBEX1 glycoprotein X precursor - equine herpesvirus 1 (strain Ab4p)
gb|AAB02506.1| (M86664) membrane glycoprotein [Equine herpesvirus 1]
Length = 797
Score = 40.2 bits (92), Expect = 0.053
Identities = 33/134 (24%), Positives = 41/134 (29%)
Frame = -2
Query: 819 SATTQS*SKLTESPP*NSALPPTARQPSPYXXXXXXXXXXXXXXXXXXXXXXXXREVPNS 640
S TT S S T SPP S+ PPT+ S +P S
Sbjct: 44 SGTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTS 103
Query: 639 ESELQRRTVPCRSKPAAQTSTANLYTPPMASSRTSRATVFGLRITPALRMCKSRSRVVTS 460
S T P S T+TA T ++ T+ A+ T A S T
Sbjct: 104 TSTETTTTTPTASTTTPTTTTAAPTTAATTTAVTTAAST-SAETTTATATATSTPTTTTP 162
Query: 459 LRLLPLATFVLVPT 418
VPT
Sbjct: 163 TSTTTTTATTTVPT 176
>dbj|BAA20037.1| (D88733) membrane glycoprotein [Equine herpesvirus 1]
Length = 866
Score = 39.5 bits (90), Expect = 0.091
Identities = 27/98 (27%), Positives = 34/98 (34%)
Frame = -2
Query: 819 SATTQS*SKLTESPP*NSALPPTARQPSPYXXXXXXXXXXXXXXXXXXXXXXXXREVPNS 640
S TT S S T SPP S+ PPT+ S +P S
Sbjct: 44 SGTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTS 103
Query: 639 ESELQRRTVPCRSKPAAQTSTANLYTPPMASSRTSRAT 526
S T P S T+TA P A++ T+ T
Sbjct: 104 TSTETTTTTPTASTTTPTTTTA---APTTAATTTAVTT 138
>ref|NP_012284.1| cell surface flocculin with structure similar to
serine/threonine-rich GPI-anchored cell wall proteins;
Muc1p
sp|P08640|AMYH_YEAST GLUCOAMYLASE S1/S2 PRECURSOR (GLUCAN 1,4-ALPHA-GLUCOSIDASE)
(1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE)
pir||S48478 glucan 1,4-alpha-glucosidase (EC 3.2.1.3) - yeast (Saccharomyces
cerevisiae)
emb|CAA86176.1| (Z38061) mal5, sta1, len: 1367, CAI: 0.3, AMYH_YEAST P08640
GLUCOAMYLASE S1 (EC 3.2.1.3) [Saccharomyces cerevisiae]
gb|AAC49609.1| (U30626) glucoamylase [Saccharomyces cerevisiae var. diastaticus]
Length = 1367
Score = 33.6 bits (75), Expect = 5.3
Identities = 36/143 (25%), Positives = 56/143 (38%)
Frame = -2
Query: 828 TPPSATTQS*SKLTESPP*NSALPPTARQPSPYXXXXXXXXXXXXXXXXXXXXXXXXREV 649
TP S+TT+S S +P ++ +A P+P V
Sbjct: 583 TPSSSTTESSSAPVPTPSSSTTESSSAPAPTP----------------SSSTTESSSAPV 626
Query: 648 PNSESELQRRTVPCRSKPAAQTSTANLYTPPMASSRTSRATVFGLRITPALRMCKSRSRV 469
+S +E VP S ++S+A + TP +++ +S A V TP+ +S S
Sbjct: 627 TSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPV----PTPSSSTTESSSAP 682
Query: 468 VTSLRLLPLATFVLVPTAE*SQA 400
VTS + V T E S A
Sbjct: 683 VTSSTTESSSAPVTSSTTESSSA 705
>emb|CAB96113.1| (AJ243287) SE6 [Papillomavirus sylvilagi]
Length = 179
Score = 33.2 bits (74), Expect = 6.9
Identities = 15/32 (46%), Positives = 18/32 (55%), Gaps = 5/32 (15%)
Frame = +2
Query: 1028 CCSCRLISVRDLGSIPCGYGLV-----CCGFCDSCRL 1123
C SC+L D G P G+ CCG CD CR+
Sbjct: 40 CSSCKLSDQGDFGGYPPSPGIAPSPGSCCGDCDVCRV 76
>ref|NP_061564.1| Orf68
gb|AAF80827.1| (AF165214) Orf68 [Pseudomonas phage D3]
Length = 249
Score = 33.2 bits (74), Expect = 6.9
Identities = 20/49 (40%), Positives = 29/49 (58%)
Frame = +1
Query: 94 GSLPSFSRLCLYPSSSRYASYMIQLGLPSKQMQQLPEWRHQEPRC*PRP 240
G LP FS Y SSS+Y++ ++ GLP +Q ++L + P C PRP
Sbjct: 173 GELPGFSDRW-YWSSSQYSANAVRHGLPRRQHERLKQ--DVRPPCPPRP 218
>gb|AAB91538.1| (U91410) LE6 protein [Cottontail rabbit papillomavirus]
emb|CAB96112.1| (AJ243287) LE6 [Papillomavirus sylvilagi]
Length = 276
Score = 33.2 bits (74), Expect = 6.9
Identities = 15/32 (46%), Positives = 18/32 (55%), Gaps = 5/32 (15%)
Frame = +2
Query: 1028 CCSCRLISVRDLGSIPCGYGLV-----CCGFCDSCRL 1123
C SC+L D G P G+ CCG CD CR+
Sbjct: 137 CSSCKLSDQGDFGGYPPSPGIAPSPGSCCGDCDVCRV 173
>gb|AAA17405.1| (U01028) 190-kDa antigen (rOmpA) [Rickettsia conorii]
Length = 2021
Score = 32.8 bits (73), Expect = 9.0
Identities = 32/109 (29%), Positives = 40/109 (36%)
Frame = -1
Query: 754 NGKATFTVPVDTDSENFSDDDLIYIVASILVGEGSAKLRKRATKTDCTLQIQAGSANVYS 575
NG ATFT DS D +A+I VG G A L K T SA ++
Sbjct: 779 NGIATFT----GDSTVTGDIGNTNALATISVGAGKATLGGAIIKATTTKLTDNASAVTFT 834
Query: 574 EPLYTTDGKFQDIKSNGIRSSDNPGAANVQVTQSCGDKPSPLTVGNVRA 428
P+ T + DN G AN + GD +GN A
Sbjct: 835 NPVVVTG------------AIDNTGNANNGIVTFTGDSTVTGNIGNTNA 871
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355380767
Number of Sequences: 565281
Number of extensions: 6772635
Number of successful extensions: 22825
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 22811
Number of HSP's gapped (non-prelim): 20
length of query: 481
length of database: 177,575,912
effective HSP length: 54
effective length of query: 426
effective length of database: 147,050,738
effective search space: 62643614388
effective search space used: 62643614388
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 73 (32.8 bits)