The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.1.1 [Aug-8-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Contig629.seq Contig629
(1437 letters)
Database: nr
565,281 sequences; 177,575,912 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA19972.1| (AB003498) subtilisin-like protease [Pneumo... 37 0.46
dbj|BAA19973.1| (AB003499) subtilisin-like protease 3 [Pneu... 37 0.46
dbj|BAA96299.1| (AB035548) Orf5 [Streptomyces virginiae] 36 0.79
pir||A34615 profilaggrin - rat (fragment) >gi|204144|gb|AAA... 36 1.0
gb|AAF47658.1| (AE003475) CG16973 gene product [Drosophila ... 36 1.0
pir||JC6316 probable protein kinase (EC 2.7.1.-) - fruit fl... 35 1.8
pir||S51306 G-box binding factor 1A - rape >gi|7488453|pir|... 34 5.2
sp|P50185|MTD5_DACSA MODIFICATION METHYLASE DSAV (CYTOSINE-... 33 6.8
dbj|BAA85429.1| (AP000616) hypothetical protein [Oryza sativa] 33 9.0
sp|O14640|DVL1_HUMAN SEGMENT POLARITY PROTEIN DISHEVELLED H... 33 9.0
gb|AAB06574.1| (L81125) monooxygenase subunit [Pseudomonas ... 33 9.0
>dbj|BAA19972.1| (AB003498) subtilisin-like protease [Pneumocystis carinii]
Length = 258
Score = 37.1 bits (84), Expect = 0.46
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 341 DNGLDYSNHARGGDHQAYGSHDVGSRDIQGPEKPPRPDGQSHGIAHANEEA 493
DN LDY+N ++ + GS+D S+D KP PD +SHG A E A
Sbjct: 160 DNALDYTNEDLAPNYNSEGSYDFDSKDFD--PKPDNPD-ESHGTKCAGEVA 207
>dbj|BAA19973.1| (AB003499) subtilisin-like protease 3 [Pneumocystis carinii]
Length = 520
Score = 37.1 bits (84), Expect = 0.46
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 341 DNGLDYSNHARGGDHQAYGSHDVGSRDIQGPEKPPRPDGQSHGIAHANEEA 493
DN LDY+N ++ + GS+D S+D KP PD +SHG A E A
Sbjct: 22 DNALDYTNEDLAPNYNSEGSYDFDSKDFD--PKPDNPD-ESHGTKCAGEVA 69
>dbj|BAA96299.1| (AB035548) Orf5 [Streptomyces virginiae]
Length = 277
Score = 36.4 bits (82), Expect = 0.79
Identities = 41/114 (35%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = -2
Query: 674 PPLQARRLSRQTPQSQPSCVAYCRRCVGTTYRRALSSRRTAAGSVFVAEHQSRANPSPRR 495
PP RRL+RQ P++ + RR GT R A RR H+SR PSP R
Sbjct: 151 PPGHLRRLARQPPRTG-RLRPHLRR-TGTPARPARGHRR----------HRSRWGPSPPR 198
Query: 494 LLLRSHAQFRGFDHRVVVAS-PALECRASRHRGTRMLDDRLHGHGYCNQGHCRPP 333
A R DHR +V PAL DRL G G+ +G RPP
Sbjct: 199 RAPGPAAPPRHADHRPLVRQLPAL------------ARDRLPGRGHV-RGEPRPP 240
>pir||A34615 profilaggrin - rat (fragment)
gb|AAA41161.1| (M21759) profilaggrin [Rattus norvegicus]
Length = 625
Score = 36.0 bits (81), Expect = 1.0
Identities = 45/165 (27%), Positives = 62/165 (37%), Gaps = 9/165 (5%)
Frame = +2
Query: 185 QRAA*MSPDHGSSRSRRGVWSHXXXXXXXXXXXXXXXXXXXX-------SQRKDTEEEDD 343
QRAA D S+R R +H + R +E
Sbjct: 370 QRAARHEQDSDSTRQRGSHQAHSSARTQEEIARGRSGATASEGPGPQREAARDSSEHAQS 429
Query: 344 NGLDYSNHARGGDHQAYGSHDVGSRDIQGPEKPPRPDGQSHGIA--HANEEATGGGWGSR 517
+ S+ R G H +H+ R Q ++ R G G A H+ EA+GG G R
Sbjct: 430 RRTETSSRGRSG-HSTGRAHE--DRHQQATDRSAR-SGSRGGQAGSHSESEASGGQAGRR 485
Query: 518 VTGALRRTPSPQQFFDSTAPADTSSQHIGGSRRRKTVAIVVSAETGAVPEEEDP 679
T A R T P+Q D+ T S S +R + S TG+ E P
Sbjct: 486 GTAATRHTSRPEQSPDTA--GRTGSSRGQQSAQRHGDSTPGSTRTGSRGRGESP 537
>gb|AAF47658.1| (AE003475) CG16973 gene product [Drosophila melanogaster]
Length = 979
Score = 36.0 bits (81), Expect = 1.0
Identities = 20/49 (40%), Positives = 27/49 (54%)
Frame = +2
Query: 410 GSRDIQGPEKPPRPDGQSHGIAHANEEATGGGWGSRVTGALRRTPSPQQ 556
GS+ PE PPR + QS G++ + A+GGG S+ AL PQQ
Sbjct: 493 GSQQQAQPEAPPRNNRQSSGLSSSGGSASGGGGSSKPAAAL-----PQQ 536
>pir||JC6316 probable protein kinase (EC 2.7.1.-) - fruit fly (Drosophila
melanogaster)
Length = 1102
Score = 35.2 bits (79), Expect = 1.8
Identities = 21/49 (42%), Positives = 28/49 (56%)
Frame = +2
Query: 410 GSRDIQGPEKPPRPDGQSHGIAHANEEATGGGWGSRVTGALRRTPSPQQ 556
GS+ Q PE PPR + QS G++ + A+GGG S+ AL PQQ
Sbjct: 542 GSQQAQ-PEAPPRNNRQSSGLSSSGGSASGGGGSSKPAAAL-----PQQ 584
>pir||S51306 G-box binding factor 1A - rape
pir||S66312 G-box binding factor 1A - rape
emb|CAA58774.1| (X83922) G-box binding factor 1A [Brassica napus]
Length = 313
Score = 33.6 bits (75), Expect = 5.2
Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 8/82 (9%)
Frame = +2
Query: 386 QAYGSHDVGSRDIQGPEKPPRPDGQSH-GIAHANEEATGG-------GWGSRVTGALRRT 541
QA G GS +G P G + G++H++E TGG + G++R+
Sbjct: 106 QAPGKKSKGSLKSKGEGGEKAPSGSGNDGVSHSDESVTGGSSDENDENANHQEHGSVRKP 165
Query: 542 PSPQQFFDSTAPADTSSQHIGGSRRRKTVA 631
Q D+++ ++T+ + I GS K +A
Sbjct: 166 SFGQMLADASSQSNTTGEMIQGSVPMKPLA 195
>sp|P50185|MTD5_DACSA MODIFICATION METHYLASE DSAV (CYTOSINE-SPECIFIC METHYLTRANSFERASE
DSAV) (M.DSAV)
pir||S50098 site-specific DNA-methyltransferase (cytosine-specific) (EC
2.1.1.73) DsaV - Dactylococcopsis salina sp. nov. (DSM
4880)
gb|AAA86046.1| (U10528) DsaV methyltransferase [Dactylococcopsis salina]
Length = 351
Score = 33.2 bits (74), Expect = 6.8
Identities = 22/64 (34%), Positives = 34/64 (52%)
Frame = -2
Query: 590 TTYRRALSSRRTAAGSVFVAEHQSRANPSPRRLLLRSHAQFRGFDHRVVVASPALECRAS 411
++Y R +S+R GS + E +AN +PR L R A+ +GF V+ P +C+A
Sbjct: 232 SSYTRTISARYYKDGSEVLVE---QANKNPRVLTPRECARLQGFPESFVI--PVSDCQAW 286
Query: 410 RHRG 399
R G
Sbjct: 287 RQFG 290
>dbj|BAA85429.1| (AP000616) hypothetical protein [Oryza sativa]
Length = 720
Score = 32.8 bits (73), Expect = 9.0
Identities = 31/94 (32%), Positives = 43/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 238 SLESLGAPRSYTYSRDCRCGCLGMEPEKGH--GRGGRQWP*LQ*PCPWRRSSSIRVPRCR 411
S+ GA R+ T +R+ G + ++G GRGGR+ P + P SS V RC
Sbjct: 364 SMRVRGASRATTRARE------GEDEQEGRTEGRGGRRVPGV----PRHASSHAPVSRCS 413
Query: 412 LARHS--RAGEATTTRWSKPRNCACERRSNRRGLGFAR 519
A G AT +WS+ R + G GF R
Sbjct: 414 AADGDGESRGRATMAQWSRSVKWEGLRWNGELGFGFYR 451
>sp|O14640|DVL1_HUMAN SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-1 (DISHEVELLED-1)
(DSH HOMOLOG 1)
gb|AAB65242.1| (AF006011) dishevelled 1 [Homo sapiens]
Length = 670
Score = 32.8 bits (73), Expect = 9.0
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = +2
Query: 341 DNGLDYSNHARGGDHQAYGSHDVGS----RDIQGPEKPPRPDGQSHGIAHANEEA---TG 499
D G Y + + G Q+ GS GS R G EK R G + ++ A G
Sbjct: 530 DPGFSYGSGSTGSQ-QSEGSKSSGSTRSSRRAPGREKERRAAGAGGSGSESDHTAPSGVG 588
Query: 500 GGWGSRVTGALRRTPSPQQFFDSTAP 577
W R G L R SP+ +TAP
Sbjct: 589 SSWRERPAGQLSRGSSPRSQASATAP 614
>gb|AAB06574.1| (L81125) monooxygenase subunit [Pseudomonas sp.]
Length = 504
Score = 32.8 bits (73), Expect = 9.0
Identities = 29/113 (25%), Positives = 40/113 (34%), Gaps = 1/113 (0%)
Frame = +1
Query: 262 RSYTYSRDCRCGC-LGMEPEKGHGRGGRQWP*LQ*PCPWRRSSSIRVPRCRLARHSRAGE 438
RS+ CR C +G HG WP PWR +S C H
Sbjct: 381 RSFRLLSSCRPTCSIGWPATAMHGCA--PWP----ATPWRSTSICGA--CAPGCHGSPAF 432
Query: 439 ATTTRWSKPRNCACERRSNRRGLGFARDWCSATNTEPAAVLRLDSARRYVVPTH 600
+P C+ R + WC+A + PAA+ RR+ PT+
Sbjct: 433 RHRLAPRRPVRCSARYTVPSRATSYPAPWCAAKASRPAAI------RRWTKPTN 480
Database: nr
Posted date: Sep 29, 2000 9:53 PM
Number of letters in database: 177,575,912
Number of sequences in database: 565,281
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.270 0.0470 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475581302
Number of Sequences: 565281
Number of extensions: 10393569
Number of successful extensions: 38844
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 38836
Number of HSP's gapped (non-prelim): 16
length of query: 479
length of database: 177,575,912
effective HSP length: 54
effective length of query: 424
effective length of database: 147,050,738
effective search space: 62349512912
effective search space used: 62349512912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 73 (32.8 bits)