(Linear) MAP of: ./Contig001.seq check: 5666 from: 1 to: 884 Fgr.fasta.screen.Contig1 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI | | TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATTCGGCACGAGGGCACTTCCGAATTATCGCCTGCC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 AGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAGCCGTGCTCCCGTGAAGGCTTAATAGCGGACGG a S ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? N S A R G H F R I I A C R - b L ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? I R H E G T S E L S P A - c ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? E F G T R A L P N Y R L P - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? F E A R P C K R I I A Q - e ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? S N P V L A S G F * R R G - f R ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? I R C S P V E S N D G A - MscI EciI | | GTCGAGCGACCCGTCAACGAGCACCGAGAAGCTAACATTGGTCGTTCCCGATAGCTACAACCGCTACCTGGCCATCGCCGCCCGCGTTGTCCGCCGCAGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CAGCTCGCTGGGCAGTTGCTCGTGGCTCTTCGATTGTAACCAGCAAGGGCTATCGATGTTGGCGATGGACCGGTAGCGGCGGGCGCAACAGGCGGCGTCG a R A T R Q R A P R S * H W S F P I A T T A T W P S P P A L S A A A - b V E R P V N E H R E A N I G R S R * L Q P L P G H R R P R C P P Q P - c S S D P S T S T E K L T L V V P D S Y N R Y L A I A A R V V R R S - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d R R A V R * R A G L L * C Q D N G I A V V A V Q G D G G A N D A A A - e D L S G D V L V S F S V N T T G S L * L R * R A M A A R T T R R L - f T S R G T L S C R S A L M P R E R Y S C G S G P W R R G R Q G G C - Eco57I EcoNI | | CTGAAGGACGACAAGAGAATCGTTGCCGAGCGCCGAGGCGAGATGGATCTCCGATTTTCCAAGTGGGAGAACGGCAAGCAGGGCGAGATGCAGAACCTTG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GACTTCCTGCTGTTCTCTTAGCAACGGCTCGCGGCTCCGCTCTACCTAGAGGCTAAAAGGTTCACCCTCTTGCCGTTCGTCCCGCTCTACGTCTTGGAAC a * R T T R E S L P S A E A R W I S D F P S G R T A S R A R C R T L - b E G R Q E N R C R A P R R D G S P I F Q V G E R Q A G R D A E P C - c L K D D K R I V A E R R G E M D L R F S K W E N G K Q G E M Q N L A - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d Q L V V L S D N G L A S A L H I E S K G L P L V A L L A L H L V K - e R F S S L L I T A S R R P S I S R R N E L H S F P L C P S I C F R - f G S P R C S F R Q R A G L R S P D G I K W T P S R C A P R S A S G Q - AflII BsiWI NarI | | | CCAAGGCCAACGCTGCCATCGCCGCCGAGAACGCCGCTTAAGGAATTTGACTCGGATGGATGATTGCGTACGGGATATTGGAAGCATGGCGCCTGAAGGG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GGTTCCGGTTGCGACGGTAGCGGCGGCTCTTGCGGCGAATTCCTTAAACTGAGCCTACCTACTAACGCATGCCCTATAACCTTCGTACCGCGGACTTCCC a P R P T L P S P P R T P L K E F D S D G * L R T G Y W K H G A * R G - b Q G Q R C H R R R E R R L R N L T R M D D C V R D I G S M A P E G - c K A N A A I A A E N A A * G I * L G W M I A Y G I L E A W R L K G - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G L G V S G D G G L V G S L S N S E S P H N R V P Y Q F C P A Q L - e A L A L A A M A A S F A A * P I Q S P H I I A Y P I N S A H R R F P - f W P W R Q W R R R S R R K L F K V R I S S Q T R S I P L M A G S P - Eco57I XmnI PvuI SexAI | | | | GGATTGCTCGGATGGGATGAGATGGAACTTATTCACCAAGAGCCGCCGATCGCATGAACCTGGTGCCACTGTATCATAATGATTGCTACAATACATCAAT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CCTAACGAGCCTACCCTACTCTACCTTGAATAAGTGGTTCTCGGCGGCTAGCGTACTTGGACCACGGTGACATAGTATTACTAACGATGTTATGTAGTTA a I A R M G * D G T Y S P R A A D R M N L V P L Y H N D C Y N T S I - b G L L G W D E M E L I H Q E P P I A * T W C H C I I M I A T I H Q S - c D C S D G M R W N L F T K S R R S H E P G A T V S * * L L Q Y I N - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d P I A R I P H S P V * E G L A A S R M F R T G S Y * L S Q * L V D I - e S Q E S P I L H F K N V L L R R D C S G P A V T D Y H N S C Y M L - f P N S P H S S I S S I * W S G G I A H V Q H W Q I M I I A V I C * - CAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GTTAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCTTTTTTTTTTTTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX a N S K K K K K K K K K K R G K K K K K ? ? ? ? ? ? ? ? ? ? ? ? ? ? - b I Q K K K K K K K K K K G E K K K K K ? ? ? ? ? ? ? ? ? ? ? ? ? ? - c Q F K K K K K K K K K K K G K K K K K ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d L E F F F F F F F F F F L P F F F F F ? ? ? ? ? ? ? ? ? ? ? ? ? ? - e * N L F F F F F F F F F F P F F F F F F ? ? ? ? ? ? ? ? ? ? ? ? ? - f D I * F F F F F F F F F F P S F F F F F ? ? ? ? ? ? ? ? ? ? ? ? ? ? - XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX a ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - b ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - c ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - e ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - f ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGTAAGCGTTATATTTTGGTAAAAT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTTACATTCGCAATATAAAACCATTTTA a ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Q M * A L Y F G K I - b ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? K C K R Y I L V K F - c ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? N V S V I F W * N - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? I Y A N Y K P L I - e ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? F T L T I N Q Y F - f ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? L H L R * I K T F - AceIII EciI | | TCCGTTAAATTTTGTTAATCAGCTCTTTTTTAACCAATGGGCGGAATCGGCAAATCCCTATAATCAAAAATAGACCAAATGGGT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---- 884 AGGCAATTTAAAACAATTAGTCGAGAAAAAATTGGTTACCCGCCTTAGCCGTTTAGGGATATTAGTTTTTATCTGGTTTACCCA a P L N F V N Q L F F N Q W A E S A N P Y N Q K * T K W - b R * I L L I S S F L T N G R N R Q I P I I K N R P N G - c S V K F C * S A L F * P M G G I G K S L * S K I D Q M G - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---- 884 d G N F K T L * S K K L W H A S D A F G * L * F Y V L H T - e E T L N Q * D A R K * G I P P I P L D R Y D F I S W I P - f N R * I K N I L E K K V L P R F R C I G I I L F L G F P - Enzymes that do cut: AceIII AflII BsiWI BssSI EciI Eco57I EcoNI EcoRI MscI NarI PvuI SexAI XmnI Enzymes that do not cut: AatII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BcgI BclI BfiI BglI BglII BplI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BseRI BsgI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EagI EarI Eco47III EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI