(Linear) MAP of: ./Contig002.seq check: 7003 from: 1 to: 915 Fgr.fasta.screen.Contig2 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:45 .. EcoRI BssSI | | TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATTCGGCACGAGGGTCAAGTTACTTTCTCCGAAGCG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAGCCGTGCTCCCAGTTCAATGAAAGAGGCTTCGC a ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? N S A R G S S Y F L R S V - b ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? I R H E G Q V T F S E A - c ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? E F G T R V K L L S P K R - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? I R C S P * T V K E S A - e ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? F E A R P D L * K R R L - f ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? S N P V L T L N S E G F R - EcoRV BcgI BsmBI DraIII | BglI BssSI| BsrDI | | | | || | TCTCAGCACTTTGTGATATCTCTACATTCAAGATGGCCTCTGCTACCCGACAGTTTGCCCGCGCGGCCACTCGTGCCACTCGCAATGGCTTCGCTATTGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 AGAGTCGTGAAACACTATAGAGATGTAAGTTCTACCGGAGACGATGGGCTGTCAAACGGGCGCGCCGGTGAGCACGGTGAGCGTTACCGAAGCGATAACG a S A L C D I S T F K M A S A T R Q F A R A A T R A T R N G F A I A - b S Q H F V I S L H S R W P L L P D S L P A R P L V P L A M A S L L L - c L S T L * Y L Y I Q D G L C Y P T V C P R G H S C H S Q W L R Y C - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d D * C K T I D R C E L H G R S G S L K G A R G S T G S A I A E S N - e T E A S Q S I E V N L I A E A V R C N A R A A V R A V R L P K A I A - f R L V K H Y R * M * S P R Q * G V T Q G R P W E H W E C H S R * Q - BcgI BbsI | | TCCCCGACAGGTTATCCGTGAGCAGGGTCGCCGCTACTACTACTTCTACGGCAACAGTGCTTCTTCTGCTACCGCCAAGGTCTTCAACCCTAGCAAGGAG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGGGGCTGTCCAATAGGCACTCGTCCCAGCGGCGATGATGATGAAGATGCCGTTGTCACGAAGAAGACGATGGCGGTTCCAGAAGTTGGGATCGTTCCTC a P R Q V I R E Q G R R Y Y Y F Y G N S A S S A T A K V F N P S K E - b P D R L S V S R V A A T T T S T A T V L L L L P P R S S T L A R R - c S P T G Y P * A G S P L L L L L R Q Q C F F C Y R Q G L Q P * Q G G - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S G S L N D T L L T A A V V V E V A V T S R R S G G L D E V R A L L - e G R C T I R S C P R R * * * K * P L L A E E A V A L T K L G L L S - f E G V P * G H A P D G S S S S R R C C H K K Q * R W P R * G * C P - Pfl1108I BsrBI BseRI| | || GACTACCAAAAGGTTGACAACGAGATTGCCGCTCGCTTGGAGGAGAAGGACGACTACGACTATGGCAGCTATGGTCCCGTTCTAGTTCGGCTTGCCTGGC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CTGATGGTTTTCCAACTGTTGCTCTAACGGCGAGCGAACCTCCTCTTCCTGCTGATGCTGATACCGTCGATACCAGGGCAAGATCAAGCCGAACGGACCG a D Y Q K V D N E I A A R L E E K D D Y D Y G S Y G P V L V R L A W H - b T T K R L T T R L P L A W R R R T T T T M A A M V P F * F G L P G - c L P K G * Q R D C R S L G G E G R L R L W Q L W S R S S S A C L A - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d V V L L N V V L N G S A Q L L L V V V V I A A I T G N * N P K G P - e S * W F T S L S I A A R K S S F S S * S * P L * P G T R T R S A Q - f P S G F P Q C R S Q R E S P P S P R S R S H C S H D R E L E A Q R A - KpnI BglI Pfl1108I PinAI| BsrDI XcmI | | || | | | ACGCCAGTGGCACCTACGACAAGGAGACTGGTACCGGTGGCAGCAATGGAGCTACCATGCGATTCGCTCCTGAGTCTGACCACGGTGCCAACGCCGGTCT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TGCGGTCACCGTGGATGCTGTTCCTCTGACCATGGCCACCGTCGTTACCTCGATGGTACGCTAAGCGAGGACTCAGACTGGTGCCACGGTTGCGGCCAGA a A S G T Y D K E T G T G G S N G A T M R F A P E S D H G A N A G L - b T P V A P T T R R L V P V A A M E L P C D S L L S L T T V P T P V W - c R Q W H L R Q G D W Y R W Q Q W S Y H A I R S * V * P R C Q R R S - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d V G T A G V V L L S T G T A A I S S G H S E S R L R V V T G V G T - e C A L P V * S L S V P V P P L L P A V M R N A G S D S W P A L A P R - f R W H C R R C P S Q Y R H C C H L * W A I R E Q T Q G R H W R R D - Eco57I BamHI NgoAIV | | | GGCCGCTGCCCGTGACTTCCTTCAGCCTGTCAAGGAGAAGTTCCCTTGGATCACCTACTCGGATCTCTGGATCCTTGCCGGCGTTTGTGCTATCCAGGAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CCGGCGACGGGCACTGAAGGAAGTCGGACAGTTCCTCTTCAAGGGAACCTAGTGGATGAGCCTAGAGACCTAGGAACGGCCGCAAACACGATAGGTCCTC a A A A R D F L Q P V K E K F P W I T Y S D L W I L A G V C A I Q E - b P L P V T S F S L S R R S S L G S P T R I S G S L P A F V L S R R - c G R C P * L P S A C Q G E V P L D H L L G S L D P C R R L C Y P G D - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d Q G S G T V E K L R D L L L E R P D G V R I E P D K G A N T S D L L - e A A A R S K R * G T L S F N G Q I V * E S R Q I R A P T Q A I W S - f P R Q G H S G E A Q * P S T G K S * R S P D R S G Q R R K H * G P - DrdI BbsI SanDI BsgI | NcoI| | | | || ATGCTGGGTCCCGCTATACCTTACCGACCTGGCCGTTCCGACCGCGATGTCTCTGGCTGCACACCCCATGGCCGTCTTCCTGACGCTTCCAAGCGCCAGG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TACGACCCAGGGCGATATGGAATGGCTGGACCGGCAAGGCTGGCGCTACAGAGACCGACGTGTGGGGTACCGGCAGAAGGACTGCGAAGGTTCGCGGTCC a M L G P A I P Y R P G R S D R D V S G C T P H G R L P D A S K R Q D - b C W V P L Y L T D L A V P T A M S L A A H P M A V F L T L P S A R - c A G S R Y T L P T W P F R P R C L W L H T P W P S S * R F Q A P G - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d H Q T G S Y R V S R A T G V A I D R A A C G M A T K R V S G L A L - e I S P G A I G * R G P R E S R S T E P Q V G W P R R G S A E L R W - f S A P D R * V K G V Q G N R G R H R Q S C V G H G D E Q R K W A G P - ApaLI Tth111I PinAI BspGI | | | | ATCATCTNCGCNGTATCTTCGGACGTATGGGTTTCAACGATCAAGAAATCGTTGCCCTCTCATGTGCACACGCTCTGGGACGATGTCACACCGACCGGTC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TAGTAGANGCGNCATAGAAGCCTGCATACCCAAAGTTGCTAGTTCTTTAGCAACGGGAGAGTACACGTGTGCGAGACCCTGCTACAGTGTGGCTGGCCAG a H L R ? I F G R M G F N D Q E I V A L S C A H A L G R C H T D R S - b I I ? A V S S D V W V S T I K K S L P S H V H T L W D D V T P T G P - c S S ? ? Y L R T Y G F Q R S R N R C P L M C T R S G T M S H R P V - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d I M ? A T D E S T H T E V I L F D N G E * T C V S Q S S T V G V P - e S * R R ? I K P R I P K L S * S I T A R E H A C A R P R H * V S R D - f D D ? ? Y R R V Y P N * R D L F R Q G R M H V R E P V I D C R G T - Pfl1108I | CAGCTACAGTGGCACCTTGGAACTGCTCCCCACTGTCCTGACCGACTACTACTTTCGCCTACTTTATTAAAAAGAAATGCCATCGTAGTAGGTGAAACGG 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GTCGATGTCACCGTGGAACCTTGACGAGGGGTGACAGGACTGGCTGATGATGAAAGCGGATGAAATAATTTTTCTTTACGGTAGCATCATCCACTTTGCC a S Y S G T L E L L P T V L T D Y Y F R L L Y * K E M P S * * V K R - b A T V A P W N C S P L S * P T T T F A Y F I K K K C H R S R * N G - c Q L Q W H L G T A P H C P D R L L L S P T L L K R N A I V V G E T A - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d G A V T A G Q F Q E G S D Q G V V V K A * K I L F F H W R L L H F P - e L * L P V K S S S G V T R V S * * K R R S * * F S I G D Y Y T F R - f W S C H C R P V A G W Q G S R S S S E G V K N F L F A M T T P S V - CCCTGCTACATACAA 901 ---------+----- 915 GGGACGATGTATGTT a P C Y I Q - b P A T Y - c L L H T - 901 ---------+----- 915 d G A V Y L - e G Q * M C - f A R S C V - Enzymes that do cut: ApaLI BamHI BbsI BcgI BglI BseRI BsgI BsmBI BspGI BsrBI BsrDI BssSI DraIII DrdI Eco57I EcoRI EcoRV KpnI NcoI NgoAIV Pfl1108I PinAI SanDI Tth111I XcmI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI AscI AvrII Bce83I BclI BfiI BglII BplI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BsiWI BsmI BspEI BspLU11I BspMI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DrdII EagI EarI EciI Eco47III EcoNI FseI FspI HgiEII HindIII HpaI MfeI MluI MscI NarI NdeI NheI NotI NruI NsiI NspV PacI PflMI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SalI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XbaI XhoI XmnI