(Linear) MAP of: ./Contig003.seq check: 7503 from: 1 to: 902 Fgr.fasta.screen.Contig3 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:45 .. BfiI EcoRI BssSI BsbI | | | | GGGGTTAAAGGACTGGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATTCGGCACGAGGCCAACACCGCCAATAT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCCCAATTTCCTGACCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAGCCGTGCTCCGGTTGTGGCGGTTATA a G V K G L G ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? E F G T R P T P P I C - b G L K D W G ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? N S A R G Q H R Q Y - c G * R T G ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? I R H E A N T A N M - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d T L P S P ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? S N P V L G V G G I - e P * L V P S ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? I R C S A L V A L I - f P N F S Q P ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? F E A R P W C R W Y - BsiWI SnaBI EcoRI | | GCCTGCCGCGTGGAGAGCCGCTGGTCTTACGTACGTCAACTGAATTCCCAGGCACTTCCGAAATTATCGCCTGCCGTCGAGCGACCCGTCAACGAGCACC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGGACGGCGCACCTCTCGGCGACCAGAATGCATGCAGTTGACTTAAGGGTCCGTGAAGGCTTTAATAGCGGACGGCAGCTCGCTGGGCAGTTGCTCGTGG a L P R G E P L V L R T S T E F P G T S E I I A C R R A T R Q R A P - b A C R V E S R W S Y V R Q L N S Q A L P K L S P A V E R P V N E H R - c P A A W R A A G L T Y V N * I P R H F R N Y R L P S S D P S T S T - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d H R G R P S G S T K R V D V S N G P V E S I I A Q R R A V R * R A G - e G A A H L A A P R V Y T L Q I G L C K R F * R R G D L S G D V L V - f A Q R T S L R Q D * T R * S F E W A S G F N D G A T S R G T L S C - MscI EciI Eco57I | | | GAGAAGCTAACATTGGTCGTTCCCGATAGCTACAACCGCTACCTGGCCATCGCCGCCCGCGTTGTCCGCCGCAGCCTGAAGGACGACAAGAGAATCGTTG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CTCTTCGATTGTAACCAGCAAGGGCTATCGATGTTGGCGATGGACCGGTAGCGGCGGGCGCAACAGGCGGCGTCGGACTTCCTGCTGTTCTCTTAGCAAC a R S * H W S F P I A T T A T W P S P P A L S A A A * R T T R E S L - b E A N I G R S R * L Q P L P G H R R P R C P P Q P E G R Q E N R C - c E K L T L V V P D S Y N R Y L A I A A R V V R R S L K D D K R I V A - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d L L * C Q D N G I A V V A V Q G D G G A N D A A A Q L V V L S D N - e S F S V N T T G S L * L R * R A M A A R T T R R L R F S S L L I T - f R S A L M P R E R Y S C G S G P W R R G R Q G G C G S P R C S F R Q - BspMI | CCGAGCGCCGAGGCGAGATGGATCTCCGATTTTCCAAGTGGGAGGTAAGAAGGCGACGCTGAAACCTGCGAAAACAATGAGCGATAGAGAAAAGCGACAA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GGCTCGCGGCTCCGCTCTACCTAGAGGCTAAAAGGTTCACCCTCCATTCTTCCGCTGCGACTTTGGACGCTTTTGTTACTCGCTATCTCTTTTCGCTGTT a P S A E A R W I S D F P S G R * E G D A E T C E N N E R * R K A T R - b R A P R R D G S P I F Q V G G K K A T L K P A K T M S D R E K R Q - c E R R G E M D L R F S K W E V R R R R * N L R K Q * A I E K S D K - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G L A S A L H I E S K G L P L Y S P S A S V Q S F L S R Y L F A V - e A S R R P S I S R R N E L H S T L L R R Q F R R F C H A I S F L S L - f R A G L R S P D G I K W T P P L F A V S F G A F V I L S L S F R C - EcoNI AflII | | GATTACTAACGGGTAAATTACCTCAACAGAACGGCAAGCAGGGCGAGATGCAGAACCTTGCCAAGGCCAACGCTGCCATCGCCGCCGAGAACGCCGCTTA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CTAATGATTGCCCATTTAATGGAGTTGTCTTGCCGTTCGTCCCGCTCTACGTCTTGGAACGGTTCCGGTTGCGACGGTAGCGGCGGCTCTTGCGGCGAAT a L L T G K L P Q Q N G K Q G E M Q N L A K A N A A I A A E N A A * - b D Y * R V N Y L N R T A S R A R C R T L P R P T L P S P P R T P L K - c I T N G * I T S T E R Q A G R D A E P C Q G Q R C H R R R E R R L - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d L N S V P L N G * C F P L C P S I C F R A L A L A A M A A S F A A * - e I V L P Y I V E V S R C A P R S A S G Q W P W R Q W R R R S R R K - f S * * R T F * R L L V A L L A L H L V K G L G V S G D G G L V G S - BsiWI NarI Eco57I XmnI | | | | AGGAATTTGACTCGGATGGATGATTGCGTACGGGATATTGGAAGCATGGCGCCTGAAGGGGGATTGCTCGGATGGGATGAGATGGAACTTATTCACCAAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TCCTTAAACTGAGCCTACCTACTAACGCATGCCCTATAACCTTCGTACCGCGGACTTCCCCCTAACGAGCCTACCCTACTCTACCTTGAATAAGTGGTTC a G I * L G W M I A Y G I L E A W R L K G D C S D G M R W N L F T K - b E F D S D G * L R T G Y W K H G A * R G I A R M G * D G T Y S P R - c R N L T R M D D C V R D I G S M A P E G G L L G W D E M E L I H Q E - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d P I Q S P H I I A Y P I N S A H R R F P S Q E S P I L H F K N V L - e L F K V R I S S Q T R S I P L M A G S P P N S P H S S I S S I * W - f L S N S E S P H N R V P Y Q F C P A Q L P I A R I P H S P V * E G L - PvuI SexAI Pfl1108I | | | AGCCGCCGATCGCATGAACCTGGTGCCACTGTATCATAATGATTGCTACAATACATCAATCAATTCAAAAACTACGATTGTAATTGCGAAAAAAAAAAAA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TCGGCGGCTAGCGTACTTGGACCACGGTGACATAGTATTACTAACGATGTTATGTAGTTAGTTAAGTTTTTGATGCTAACATTAACGCTTTTTTTTTTTT a S R R S H E P G A T V S * * L L Q Y I N Q F K N Y D C N C E K K K K - b A A D R M N L V P L Y H N D C Y N T S I N S K T T I V I A K K K K - c P P I A * T W C H C I I M I A T I H Q S I Q K L R L * L R K K K K - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d L R R D C S G P A V T D Y H N S C Y M L * N L F * S Q L Q S F F F - e S G G I A H V Q H W Q I M I I A V I C * D I * F S R N Y N R F F F F - f A A S R M F R T G S Y * L S Q * L V D I L E F V V I T I A F F F F - AAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TTTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX a K K ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - b K K ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - c K K ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d F F F ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - e F F ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - f F F F ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX a ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - b ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - c ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - e ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - f ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? - XX 901 -- 902 XX a - b - c - 901 -- 902 d ? - e ? - f - Enzymes that do cut: AflII BfiI BsbI BsiWI BspMI BssSI EciI Eco57I EcoNI EcoRI MscI NarI Pfl1108I PvuI SexAI SnaBI XmnI Enzymes that do not cut: AatII AceIII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BcgI BclI BglI BglII BplI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BseRI BsgI BsmI BsmBI BspEI BspGI BspLU11I BsrBI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EagI EarI Eco47III EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SfiI SgfI SgrAI SmaI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI