(Linear) MAP of: ./Contig004.seq check: 287 from: 1 to: 878 Fgr.fasta.screen.Contig4 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:45 .. AlwNI EcoRI BssSI | | | CAGAATCTGGTNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATTCGGCACGAGGGTTACTATCTCCGAAGCG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GTCTTAGACCANCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAGCCGTGCTCCCAATGATAGAGGCTTCGC a Q N L V ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? I R H E G Y Y L R S V - b R I W ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? E F G T R V T I S E A - c E S G ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? N S A R G L L S P K R - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F R T S ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? I R C S P * * R R L - e S D P ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? F E A R P N S D G F R - f L I Q ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? S N P V L T V I E S A - EcoRV BcgI BsmBI DraIII | BglI BssSI| BsrDI | | | | || | TCTCAGCACTTTGTGATATCTCTACATTCAAGATGGCCTCTGCTACCCGACAGTTTGCCCGCGCGGCCACTCGTGCCACTCGCAATGGCTTCGCTATTGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 AGAGTCGTGAAACACTATAGAGATGTAAGTTCTACCGGAGACGATGGGCTGTCAAACGGGCGCGCCGGTGAGCACGGTGAGCGTTACCGAAGCGATAACG a S A L C D I S T F K M A S A T R Q F A R A A T R A T R N G F A I A - b S Q H F V I S L H S R W P L L P D S L P A R P L V P L A M A S L L L - c L S T L * Y L Y I Q D G L C Y P T V C P R G H S C H S Q W L R Y C - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d T E A S Q S I E V N L I A E A V R C N A R A A V R A V R L P K A I A - e R L V K H Y R * M * S P R Q * G V T Q G R P W E H W E C H S R * Q - f D * C K T I D R C E L H G R S G S L K G A R G S T G S A I A E S N - BcgI EarI EarI AlwNI | | | | TCCCCGACAGGTTATCCGTCAGCAGGGTCGCCGCTACTACTCTTCCGAGCCCGCACAGAAGTCCTCTTCGGCATGGATTTGGTTGACAGGTGCTGCCGTT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGGGGCTGTCCAATAGGCAGTCGTCCCAGCGGCGATGATGAGAAGGCTCGGGCGTGTCTTCAGGAGAAGCCGTACCTAAACCAACTGTCCACGACGGCAA a P R Q V I R Q Q G R R Y Y S S E P A Q K S S S A W I W L T G A A V - b P D R L S V S R V A A T T L P S P H R S P L R H G F G * Q V L P L - c S P T G Y P S A G S P L L L F R A R T E V L F G M D L V D R C C R C - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G R C T I R * C P R R * * E E S G A C F D E E A H I Q N V P A A T - e E G V P * G D A P D G S S S K R A R V S T R K P M S K T S L H Q R - f S G S L N D T L L T A A V V R G L G C L L G R R C P N P Q C T S G N - BpmI BbsI | | GCTGGAGGTGCTGGCTACTACTTCTACGGCCACAGTGCTTCTTGTGCTACCGCCAAGGTCTTCAACCCTACCAAGGAGGACTACCAAAAGGTTTACAACG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CGACCTCCACGACCGATGATGAAGATGCCGGTGTCACGAAGAACACGATGGCGGTTCCAGAAGTTGGGATGGTTCCTCCTGATGGTTTTCCAAATGTTGC a A G G A G Y Y F Y G H S A S C A T A K V F N P T K E D Y Q K V Y N E - b L E V L A T T S T A T V L L V L P P R S S T L P R R T T K R F T T - c W R C W L L L L R P Q C F L C Y R Q G L Q P Y Q G G L P K G L Q R - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d A P P A P * * K * P W L A E Q A V A L T K L G V L S S * W F T * L - e Q Q L H Q S S S R R G C H K K H * R W P R * G * W P P S G F P K C R - f S S T S A V V E V A V T S R T S G G L D E V R G L L V V L L N V V - Pfl1108I BsrBI BseRI| BspGI AceIII | || | | AGATTGCCGCTCGCTTGGAGGAGAACGACGACTACGACTATGGCAGCTATGGTCCAGCTCTAGTTCGTGTAGCCTGGCACACCAACGGCACCTACTACAA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TCTAACGGCGAGCGAACCTCCTCTTGCTGCTGATGCTGATACCGTCGATACCAGGTCGAGATCAAGCACATCGGACCGTGTGGTTGCCGTGGATGATGTT a I A A R L E E N D D Y D Y G S Y G P A L V R V A W H T N G T Y Y N - b R L P L A W R R T T T T T M A A M V Q L * F V * P G T P T A P T T T - c D C R S L G G E R R L R L W Q L W S S S S S C S L A H Q R H L L Q - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d S I A A R K S S F S S * S * P L * P G A R T R T A Q C V L P V * * L - e S Q R E S P P S R R S R S H C S H D L E L E H L R A C W R C R S C - f L N G S A Q L L V V V V V I A A I T W S * N T Y G P V G V A G V V - BglI KpnI BsrDI XcmI |Eco57I | | | | | CGAGACTGGTACCGGGGGCAGCAATGGAGCTACCATGCGATTCTCTCCTGAGACTGAGCACAGTGCCAACGCCGGTCTGGCCGGTGCCCGTGACTTCCTT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCTCTGACCATGGCCCCCGTCGTTACCTCGATGGTACGCTAAGAGAGGACTCTGACTCGTGTCACGGTTGCGGCCAGACCGGCCACGGGCACTGAAGGAA a E T G T G G S N G A T M R F S P E T E H S A N A G L A G A R D F L - b R L V P G A A M E L P C D S L L R L S T V P T P V W P V P V T S F - c R D W Y R G Q Q W S Y H A I L S * D * A Q C Q R R S G R C P * L P S - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S V P V P P L L P A V M R N E G S V S C L A L A P R A P A R S K R - e R S Q Y R P C C H L * W A I R E Q S Q A C H W R R D P R H G H S G - f V L S T G P A A I S S G H S E R R L S L V T G V G T Q G T G T V E K - BamHI AceIII EciI BsaXI | | | | CAGCCTGTCAAGGAGAAGTTCCCTTGGGATCCCTACTCCGATCTCTGGGATCTTGCCGGGCGTGTGTGTCTTTTCAGGCGGAGCTGGGGTCGCGGCTTCA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GTCGGACAGTTCCTCTTCAAGGGAACCCTAGGGATGAGGCTAGAGACCCTAGAACGGCCCGCACACACAGAAAAGTCCGCCTCGACCCCAGCGCCGAAGT a Q P V K E K F P W D P Y S D L W D L A G R V C L F R R S W G R G F T - b S L S R R S S L G I P T P I S G I L P G V C V F S G G A G V A A S - c A C Q G E V P L G S L L R S L G S C R A C V S F Q A E L G S R L H - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d * G T L S F N G Q S G * E S R Q S R A P R T H R K L R L Q P R P K - e E A Q * P S T G K P D R S R D R P D Q R A H T D K * A S S P D R S * - f L R D L L L E R P I G V G I E P I K G P T H T K E P P A P T A A E - HgiEII BsbI BsgI | | | CCTTGCTCGGTTGGGTCTGCGGGTCGCGTGATAGTGGGGTGGGTGCAGGCCAGAGTGTTGTGGCGGGATGTCGCGGGGTGTCGGGACTGTTCGCGGGGTG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GGAACGAGCCAACCCAGACGCCCAGCGCACTATCACCCCACCCACGTCCGGTCTCACAACACCGCCCTACAGCGCCCCACAGCCCTGACAAGCGCCCCAC a L L G W V C G S R D S G V G A G Q S V V A G C R G V S G L F A G W - b P C S V G S A G R V I V G W V Q A R V L W R D V A G C R D C S R G G - c L A R L G L R V A * * W G G C R P E C C G G M S R G V G T V R G V - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d V K S P Q T Q P D R S L P T P A P W L T T A P H R P T D P S N A P H - e R A R N P R R T A H Y H P P H L G S H Q P P I D R P T P V T R P T - f G Q E T P D A P R T I T P H T C A L T N H R S T A P H R S Q E R P - BsaXI SacII | | GGTGGAGGGTGTGTGTAGGTCGCGGCTTGATGTCTGGATGGAGGGTGAAGTGGGCCGCGGAAGGGGGAGGTAGGGGAG 801 ---------+---------+---------+---------+---------+---------+---------+-------- 878 CCACCTCCCACACACATCCAGCGCCGAACTACAGACCTACCTCCCACTTCACCCGGCGCCTTCCCCCTCCATCCCCTC a V E G V C R S R L D V W M E G E V G R G R G R * G - b W R V C V G R G L M S G W R V K W A A E G G G R G - c G G G C V * V A A * C L D G G * S G P R K G E V G E - 801 ---------+---------+---------+---------+---------+---------+---------+-------- 878 d T S P T H L D R S S T Q I S P S T P R P L P L Y P L - e P P P H T Y T A A Q H R S P P H L P G R F P S T P S - f P H L T H T P R P K I D P H L T F H A A S P P P L P - Enzymes that do cut: AceIII AlwNI BamHI BbsI BcgI BglI BpmI BsaXI BsbI BseRI BsgI BsmBI BspGI BsrBI BsrDI BssSI DraIII EarI EciI Eco57I EcoRI EcoRV HgiEII KpnI Pfl1108I SacII XcmI Enzymes that do not cut: AatII AflII AhdI ApaI ApaBI ApaLI AscI AvrII Bce83I BclI BfiI BglII BplI Bpu10I Bpu1102I BsaI BsaBI BsiWI BsmI BspEI BspLU11I BspMI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DrdI DrdII EagI Eco47III EcoNI FseI FspI HindIII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XhoI XmnI