(Linear) MAP of: ./Contig005.seq check: 3048 from: 1 to: 825 Fgr.fasta.screen.Contig5 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:45 .. EcoRI BssSI AhdI XhoI | | | | GAATTCGGCACGAGGCAACTTCAAAACCTCGGTCATTCTTGGTTTTGAACGGACTCTGAGTCTCTCGAGTCTATAGGAACTCTATTTGGAGTTTTCTTTC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGTTGAAGTTTTGGAGCCAGTAAGAACCAAAACTTGCCTGAGACTCAGAGAGCTCAGATATCCTTGAGATAAACCTCAAAAGAAAG a E F G T R Q L Q N L G H S W F * T D S E S L E S I G T L F G V F F L - b N S A R G N F K T S V I L G F E R T L S L S S L * E L Y L E F S F - c I R H E A T S K P R S F L V L N G L * V S R V Y R N S I W S F L S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P L K L V E T M R P K S R V R L R E L R Y S S * K S N E K - e N P V L C S * F R P * E Q N Q V S E S D R S D I P V R N P T K K - f I R C S A V E F G R D N K T K F P S Q T E R T * L F E I Q L K R E - FspI Eco47III EarI NruI | | | | TTTTGCGCACTTCCCAGCGCTATAATTACGACAAAACACCATCAACCTCTTCTGTGTCGTATCGCGAACTATCGCCAACTTCAACATTTCTCACAATGGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 AAAACGCGTGAAGGGTCGCGATATTAATGCTGTTTTGTGGTAGTTGGAGAAGACACAGCATAGCGCTTGATAGCGGTTGAAGTTGTAAAGAGTGTTACCG a L R T S Q R Y N Y D K T P S T S S V S Y R E L S P T S T F L T M A - b F C A L P S A I I T T K H H Q P L L C R I A N Y R Q L Q H F S Q W R - c F A H F P A L * L R Q N T I N L F C V V S R T I A N F N I S H N G - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d K Q A S G L A I I V V F C W * G R R H R I A F * R W S * C K E C H - e R K R V E W R * L * S L V G D V E E T D Y R S S D G V E V N R V I A - f K A C K G A S Y N R C F V M L R K Q T T D R V I A L K L M E * L P - BsrDI BspLU11I ApaBI | | | GTCCGACGAGATTATTTGGAACATTATCAACGGCAATGGTGGATTCTGCTCTTACAGACTTAAAACCCCACATGTGAAAGCACAAAATGCCTTCTGTCGT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CAGGCTGCTCTAATAAACCTTGTAATAGTTGCCGTTACCACCTAAGACGAGAATGTCTGAATTTTGGGGTGTACACTTTCGTGTTTTACGGAAGACAGCA a S D E I I W N I I N G N G G F C S Y R L K T P H V K A Q N A F C R - b P T R L F G T L S T A M V D S A L T D L K P H M * K H K M P S V V - c V R R D Y L E H Y Q R Q W W I L L L Q T * N P T C E S T K C L L S * - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d R G V L N N P V N D V A I T S E A R V S K F G W M H F C L I G E T T - e D S S I I Q F M I L P L P P N Q E * L S L V G C T F A C F A K Q R - f T R R S * K S C * * R C H H I R S K C V * F G V H S L V F H R R D - EarI | AACGAATACAACCACAGTGGCTTGTGTAACCGTCAGTCTTGTCCTCTCGCCAACTCTCGCTATGCCACGATTCGAGAAGAGAACGGGAAGTTATACGCTT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TTGCTTATGTTGGTGTCACCGAACACATTGGCAGTCAGAACAGGAGAGCGGTTGAGAGCGATACGGTGCTAAGCTCTTCTCTTGCCCTTCAATATGCGAA a N E Y N H S G L C N R Q S C P L A N S R Y A T I R E E N G K L Y A C - b T N T T T V A C V T V S L V L S P T L A M P R F E K R T G S Y T L - c R I Q P Q W L V * P S V L S S R Q L S L C H D S R R E R E V I R L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d V F V V V T A Q T V T L R T R E G V R A I G R N S F L V P L * V S - e L S Y L W L P K H L R * D Q G R A L E R * A V I R S S F P F N Y A - f Y R I C G C H S T Y G D T K D E R W S E S H W S E L L S R S T I R K - NdeI Eco47III Bce83I | | | GCCTTAAAACGGTTGAAAGATCACATATGCCTAGCAAATTATGGGAAAAGCGCTTGTTGTCTCGTTCTTATAGTGAAGCTCTCAAGCAACTGGATGAGTT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CGGAATTTTGCCAACTTTCTAGTGTATACGGATCGTTTAATACCCTTTTCGCGAACAACAGAGCAAGAATATCACTTCGAGAGTTCGTTGACCTACTCAA a L K T V E R S H M P S K L W E K R L L S R S Y S E A L K Q L D E L - b A L K R L K D H I C L A N Y G K S A C C L V L I V K L S S N W M S C - c P * N G * K I T Y A * Q I M G K A L V V S F L * * S S Q A T G * V - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d A K F R N F S * M H R A F * P F L A Q Q R T R I T F S E L L Q I L - e Q R L V T S L D C I G L L N H S F R K N D R E * L S A R L C S S S N - f G * F P Q F I V Y A * C I I P F A S T T E N K Y H L E * A V P H T - BsrDI Bpu10I SphI | PvuII| | | || GTTGATCTACTGGCCCAAGTATATGATCCACAGGTGCAAGCAACGTCTTACACGCCTGACACAAGTTCAAATCCGCATGCGCCGCATTGCAGCTGAGGAT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CAACTAGATGACCGGGTTCATATACTAGGTGTCCACGTTCGTTGCAGAATGTGCGGACTGTGTTCAAGTTTAGGCGTACGCGGCGTAACGTCGACTCCTA a L I Y W P K Y M I H R C K Q R L T R L T Q V Q I R M R R I A A E D - b * S T G P S I * S T G A S N V L H A * H K F K S A C A A L Q L R M - c V D L L A Q V Y D P Q V Q A T S Y T P D T S S N P H A P H C S * G * - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d Q Q D V P G L I H D V P A L L T K C A Q C L N L D A H A A N C S L I - e N I * Q G L Y I I W L H L C R R V R R V C T * I R M R R M A A S S - f T S R S A W T Y S G C T C A V D * V G S V L E F G C A G C Q L Q P - NruI BcgI PvuII XhoI | | | | GAACGATTGGGCGAGAAGCTCGTCCCGAAGATGGCACCCAAGATCAAGCATCGCGAGCAGGCCCGTGAGCGCAAGGGCCGAGGCAGCTGCCAAACTCGAG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CTTGCTAACCCGCTCTTCGAGCAGGGCTTCTACCGTGGGTTCTAGTTCGTAGCGCTCGTCCGGGCACTCGCGTTCCCGGCTCCGTCGACGGTTTGAGCTC a E R L G E K L V P K M A P K I K H R E Q A R E R K G R G S C Q T R A - b N D W A R S S S R R W H P R S S I A S R P V S A R A E A A A K L E - c T I G R E A R P E D G T Q D Q A S R A G P * A Q G P R Q L P N S S - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d F S Q A L L E D R L H C G L D L M A L L G T L A L A S A A A L S S - e S R N P S F S T G F I A G L I L C R S C A R S R L P R P L Q W V R - f H V I P R S A R G S S P V W S * A D R A P G H A C P G L C S G F E L - EcoNI BcgI SacI Pfl1108I| BclI Sse8647I | | || | | CGCACGATTGAGCGTGAGCTCGTCGAACGCCTACGACAGGGTGCCTACGGTGATCAGCCCCTCAACGTCAGCGAGCACATCTGGTAAGAAGGTCCTCAAC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GCGTGCTAACTCGCACTCGAGCAGCTTGCGGATGCTGTCCCACGGATGCCACTAGTCGGGGAGTTGCAGTCGCTCGTGTAGACCATTCTTCCAGGAGTTG a H D * A * A R R T P T T G C L R * S A P Q R Q R A H L V R R S S T - b R T I E R E L V E R L R Q G A Y G D Q P L N V S E H I W * E G P Q R - c A R L S V S S S N A Y D R V P T V I S P S T S A S T S G K K V L N - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d R V I S R S S T S R R R C P A * P S * G R L T L S C M Q Y S P G * - e A C S Q A H A R R V G V V P H R R H D A G * R * R A C R T L L D E V - f A R N L T L E D F A * S L T G V T I L G E V D A L V D P L F T R L - NcoI | GCCATGGGAGCGTGACCGCGCTGGC 801 ---------+---------+----- 825 CGGTACCCTCGCACTGGCGCGACCG a P W E R D R A G - b H G S V T A L - c A M G A * P R W - 801 ---------+---------+----- 825 d R W P L T V A S A - e G H S R S R A P - f A M P A H G R Q - Enzymes that do cut: AhdI ApaBI Bce83I BcgI BclI Bpu10I BspLU11I BsrDI BssSI EarI Eco47III EcoNI EcoRI FspI NcoI NdeI NruI Pfl1108I PvuII SacI SphI Sse8647I XhoI Enzymes that do not cut: AatII AceIII AflII AlwNI ApaI ApaLI AscI AvrII BamHI BbsI BfiI BglI BglII BplI BpmI Bpu1102I BsaI BsaBI BsaXI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspMI BsrBI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EagI EciI Eco57I EcoRV FseI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NgoAIV NheI NotI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI RcaI RsrII SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I SspI StuI SwaI Tth111I VspI XbaI XcmI XmnI