(Linear) MAP of: ./Contig006.seq check: 2037 from: 1 to: 671 Fgr.fasta.screen.Contig6 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:45 .. EcoRI BssSI EarI EarI BbsI | | | | | GAATTCGGCACGAGGCACATCTTCAAAACTCTTCACACACACTCAACTCAAACCACAACCAACCAATCTCTCTTCTACACATCCAACATGAAGTTCTCCG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGTGTAGAAGTTTTGAGAAGTGTGTGTGAGTTGAGTTTGGTGTTGGTTGGTTAGAGAGAAGATGTGTAGGTTGTACTTCAAGAGGC a E F G T R H I F K T L H T H S T Q T T T N Q S L F Y T S N M K F S A - b N S A R G T S S K L F T H T Q L K P Q P T N L S S T H P T * S S P - c I R H E A H L Q N S S H T L N S N H N Q P I S L L H I Q H E V L R - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P V L C M K L V R * V C E V * V V V L W D R K * V D L M F N E - e I R C S A C R * F E E C V S L E F W L W G I E R R C M W C S T R R - f F E A R P V D E F S K V C V * S L G C G V L R E E V C G V H L E G - PvuII NgoAIV BsmBI| Bpu10I | || | CTGCCGTCTTCACCTTCATCGCCGCTGCCGGCGTCTCAGCTGCTCCCGCTGAGGAAAAGGCTGTCAACATGATGGCCGCCGCCCCCCAATGGACCATCCG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GACGGCAGAAGTGGAAGTAGCGGCGACGGCCGCAGAGTCGACGAGGGCGACTCCTTTTCCGACAGTTGTACTACCGGCGGCGGGGGGTTACCTGGTAGGC a A V F T F I A A A G V S A A P A E E K A V N M M A A A P Q W T I R - b L P S S P S S P L P A S Q L L P L R K R L S T * W P P P P N G P S A - c C R L H L H R R C R R L S C S R * G K G C Q H D G R R P P M D H P - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d A A T K V K M A A A P T E A A G A S S F A T L M I A A A G W H V M R - e Q R R * R * R R Q R R R L Q E R Q P F P Q * C S P R R G G I S W G - f S G D E G E D G S G A D * S S G S L F L S D V H H G G G G L P G D - BsrBI Eco47III BsaXI | Pfl1108I BsmI AatII | | | | | | CGACGCCAAGCGCTACTGCCGCTCCGACGACTCCATCTGCAACTGGAAGTTCGGCATCGACACCGGCAACGGCAAGCCCTACGAATGCCGCCACGACGTC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GCTGCGGTTCGCGATGACGGCGAGGCTGCTGAGGTAGACGTTGACCTTCAAGCCGTAGCTGTGGCCGTTGCCGTTCGGGATGCTTACGGCGGTGCTGCAG a D A K R Y C R S D D S I C N W K F G I D T G N G K P Y E C R H D V - b T P S A T A A P T T P S A T G S S A S T P A T A S P T N A A T T S - c R R Q A L L P L R R L H L Q L E V R H R H R Q R Q A L R M P P R R Q - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S A L R * Q R E S S E M Q L Q F N P M S V P L P L G * S H R W S T - e R R W A S S G S R R S W R C S S T R C R C R C R C A R R I G G R R - f A V G L A V A A G V V G D A V P L E A D V G A V A L G V F A A V V D - NarI NgoAIV BpmI ApaI | Eco47III EciI| BspMI DrdI AatII NarI | | | | || | | | | | AAGGGCCCCGGCGCCTCCAAGAAGCGCTCCGCCGGCCCTACCACCTGCGGCGACTTCACCGTCACCTCTGGCTGGAGCGACGTCTTTGGCGCCGACAACG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TTCCCGGGGCCGCGGAGGTTCTTCGCGAGGCGGCCGGGATGGTGGACGCCGCTGAAGTGGCAGTGGAGACCGACCTCGCTGCAGAAACCGCGGCTGTTGC a K G P G A S K K R S A G P T T C G D F T V T S G W S D V F G A D N G - b R A P A P P R S A P P A L P P A A T S P S P L A G A T S L A P T T - c G P R R L Q E A L R R P Y H L R R L H R H L W L E R R L W R R Q R - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d L P G P A E L F R E A P G V V Q P S K V T V E P Q L S T K P A S L - e * P G R R R W S A S R R G * W R R R S * R * R Q S S R R R Q R R C R - f L A G A G G L L A G G A R G G A A V E G D G R A P A V D K A G V V - BclI | GCTTCACCACTCTTTCTGTCGTGTCCAACTCTAAGCGTCAGATCATCTGGCCTGCTTACACCGACAAGCAGCTTGCTGGTGCCAAGATTGTCAAGCCTGA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CGAAGTGGTGAGAAAGACAGCACAGGTTGAGATTCGCAGTCTAGTAGACCGGACGAATGTGGCTGTTCGTCGAACGACCACGGTTCTAACAGTTCGGACT a F T T L S V V S N S K R Q I I W P A Y T D K Q L A G A K I V K P D - b A S P L F L S C P T L S V R S S G L L T P T S S L L V P R L S S L I - c L H H S F C R V Q L * A S D H L A C L H R Q A A C W C Q D C Q A * - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d P K V V R E T T D L E L R * I M Q G A * V S L C S A P A L I T L G S - e S * W E K Q R T W S * A D S * R A Q K C R C A A Q Q H W S Q * A Q - f A E G S K R D H G V R L T L D D P R S V G V L L K S T G L N D L R - RcaI Pfl1108I | | TCAGTCTTATGCTCCTGCTTCGCTCCCCAAATAAGCGATTTCATGAATGACTACGACATACGATAATGGTAGAACATAGTGAGGGGATTTGAGAAAGGAT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AGTCAGAATACGAGGACGAAGCGAGGGGTTTATTCGCTAAAGTACTTACTGATGCTGTATGCTATTACCATCTTGTATCACTCCCCTAAACTCTTTCCTA a Q S Y A P A S L P K * A I S * M T T T Y D N G R T * * G D L R K D - b S L M L L L R S P N K R F H E * L R H T I M V E H S E G I * E R I - c S V L C S C F A P Q I S D F M N D Y D I R * W * N I V R G F E K G L - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d * D * A G A E S G L Y A I E H I V V V Y S L P L V Y H P S K L F S - e D T K H E Q K A G W I L S K M F S * S M R Y H Y F M T L P N S F P - f I L R I S R S R E G F L R N * S H S R C V I I T S C L S P I Q S L I - TGGGGCTTTTAGCTGCATATAATGGGCTACTTGGTACATATTTATTACAATTCATGCCTTTCGAGGCCAGG 601 ---------+---------+---------+---------+---------+---------+---------+- 671 ACCCCGAAAATCGACGTATATTACCCGATGAACCATGTATAAATAATGTTAAGTACGGAAAGCTCCGGTCC a W G F * L H I M G Y L V H I Y Y N S C L S R P - b G A F S C I * W A T W Y I F I T I H A F R G Q - c G L L A A Y N G L L G T Y L L Q F M P F E A R - 601 ---------+---------+---------+---------+---------+---------+---------+- 671 d Q P K * S C I I P * K T C I * * L E H R E L G P - e N P S K A A Y L P S S P V Y K N C N M G K S A L - f P A K L Q M Y H A V Q Y M N I V I * A K R P W - Enzymes that do cut: AatII ApaI BbsI BclI BpmI Bpu10I BsaXI BsmI BsmBI BspMI BsrBI BssSI DrdI EarI EciI Eco47III EcoRI NarI NgoAIV Pfl1108I PvuII RcaI Enzymes that do not cut: AceIII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BamHI Bce83I BcgI BfiI BglI BglII BplI Bpu1102I BsaI BsaBI BsbI BseRI BsgI BsiWI BspEI BspGI BspLU11I BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdII EagI Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NcoI NdeI NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI