(Linear) MAP of: ./Contig007.seq check: 5452 from: 1 to: 645 Fgr.fasta.screen.Contig7 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:45 .. EcoRI BssSI Bst1107I Bce83I | | | | GAATTCGGCACGAGGCTTCTTCAAAACTGTATACTGCCCTTAGTTTGATTATACTCATCAATCTCAACTCATACCATCTAACCAGTAACCATGTCTCTCA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGAAGAAGTTTTGACATATGACGGGAATCAAACTAATATGAGTAGTTAGAGTTGAGTATGGTAGATTGGTCATTGGTACAGAGAGT a E F G T R L L Q N C I L P L V * L Y S S I S T H T I * P V T M S L K - b N S A R G F F K T V Y C P * F D Y T H Q S Q L I P S N Q * P C L S - c I R H E A S S K L Y T A L S L I I L I N L N S Y H L T S N H V S Q - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P K K L V T Y Q G * N S * V * * D * S M G D L W Y G H R E - e N P V L S R * F Q I S G K T Q N Y E D I E V * V M * G T V M D R - f I R C S A E E F S Y V A R L K I I S M L R L E Y W R V L L W T E * - PvuI EagI BsaBI | | | | AGAACGACAAGTTTCCCGCCTCGGCCGCCTTCGACGCCATCCAAGAGGCTATCAACGCCAGCGATGCCGATCGCAAGGACGCCATCAAGCAGGGCAACGG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TCTTGCTGTTCAAAGGGCGGAGCCGGCGGAAGCTGCGGTAGGTTCTCCGATAGTTGCGGTCGCTACGGCTAGCGTTCCTGCGGTAGTTCGTCCCGTTGCC a N D K F P A S A A F D A I Q E A I N A S D A D R K D A I K Q G N G - b R T T S F P P R P P S T P S K R L S T P A M P I A R T P S S R A T V - c E R Q V S R L G R L R R H P R G Y Q R Q R C R S Q G R H Q A G Q R - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d L V V L K G G R G G E V G D L L S D V G A I G I A L V G D L L A V - e L F S L N G A E A A K S A M W S A I L A L S A S R L S A M L C P L P - f S R C T E R R P R R R R W G L P * * R W R H R D C P R W * A P C R - PvuII Bce83I BsrBI Bce83I| BsaI | | || | TGTTTACGCCTTCACCCTCAAGCAACGCGAGCGGCGACGAGGCCAGCTGGCATATCGACCTCAAGGAGACCGGAAAGGTTGCCACTGGCACTGGCGAAAA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 ACAAATGCGGAAGTGGGAGTTCGTTGCGCTCGCCGCTGCTCCGGTCGACCGTATAGCTGGAGTTCCTCTGGCCTTTCCAACGGTGACCGTGACCGCTTTT a V Y A F T L K Q R E R R R G Q L A Y R P Q G D R K G C H W H W R K - b F T P S P S S N A S G D E A S W H I D L K E T G K V A T G T G E K - c C L R L H P Q A T R A A T R P A G I S T S R R P E R L P L A L A K S - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d T N V G E G E L L A L P S S A L Q C I S R L S V P F T A V P V P S F - e T * A K V R L C R S R R R P W S A Y R G * P S R F P Q W Q C Q R F - f H K R R * G * A V R A A V L G A P M D V E L L G S L N G S A S A F - EarI Bce83I | AatII EarI BcgI Eco57I BcgI BsmBI | | | | | | | | GCCCGACGTCACCCTCGTCCTCTCTGAAGAGAACTTTGGCAAGCTCGTCGCTGGCAAGGCCAATGCCCAGCGTCTCTTCATGGGTGGCAAGCTCAAGATT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CGGGCTGCAGTGGGAGCAGGAGAGACTTCTCTTGAAACCGTTCGAGCAGCGACCGTTCCGGTTACGGGTCGCAGAGAAGTACCCACCGTTCGAGTTCTAA a A R R H P R P L * R E L W Q A R R W Q G Q C P A S L H G W Q A Q D * - b P D V T L V L S E E N F G K L V A G K A N A Q R L F M G G K L K I - c P T S P S S S L K R T L A S S S L A R P M P S V S S W V A S S R L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G S T V R T R E S S F K P L S T A P L A L A W R R K M P P L S L I - e A R R * G R G R Q L S S Q C A R R Q C P W H G A D R * P H C A * S - f L G V D G E D E R F L V K A L E D S A L G I G L T E E H T A L E L N - RcaI Eco57I | | AAGGGCAACGTCATGAAGGCGACCAAGCTCGACCCTGTGCTGAAGAAGGCCCAGACCAAGGCCAAGCTGTAGTTGAAGCGTGTTTTTTTATATGCCTTTT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TTCCCGTTGCAGTACTTCCGCTGGTTCGAGCTGGGACACGACTTCTTCCGGGTCTGGTTCCGGTTCGACATCAACTTCGCACAAAAAAATATACGGAAAA a G Q R H E G D Q A R P C A E E G P D Q G Q A V V E A C F F I C L F - b K G N V M K A T K L D P V L K K A Q T K A K L * L K R V F L Y A F L - c R A T S * R R P S S T L C * R R P R P R P S C S * S V F F Y M P F - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d L P L T M F A V L S S G T S F F A W V L A L S Y N F R T K K Y A K - e * P C R * S P S W A R G Q A S S P G S W P W A T T S A H K K I H R K - f L A V D H L R G L E V R H Q L L G L G L G L Q L Q L T N K * I G K - BsmI BsrGI EcoRV PflMI NsiI | | | | TGGATAGCATTGTACATTGTTTTGTTGTTTCTTTCTGTATGATATCCACTTGCTGGTTGTCAATCGCTCCATGCTTCCTGGATGCGAATGCATATAGGAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 ACCTATCGTAACATGTAACAAAACAACAAAGAAAGACATACTATAGGTGAACGACCAACAGTTAGCGAGGTACGAAGGACCTACGCTTACGTATATCCTC a G * H C T L F C C F F L Y D I H L L V V N R S M L P G C E C I * E - b D S I V H C F V V S F C M I S T C W L S I A P C F L D A N A Y R S - c W I A L Y I V L L F L S V * Y P L A G C Q S L H A S W M R M H I G V - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d K S L M T C Q K T T E K Q I I D V Q Q N D I A G H K R S A F A Y L L - e P Y C Q V N N Q Q K K R Y S I W K S T T L R E M S G P H S H M Y S - f Q I A N Y M T K N N R E T H Y G S A P Q * D S W A E Q I R I C I P - MluI | TACACGCGTCAATATCAATTTTGATACCAAAAAAAAAAAAAAAAA 601 ---------+---------+---------+---------+----- 645 ATGTGCGCAGTTATAGTTAAAACTATGGTTTTTTTTTTTTTTTTT a Y T R Q Y Q F * Y Q K K K K K - b T R V N I N F D T K K K K K - c H A S I S I L I P K K K K K - 601 ---------+---------+---------+---------+----- 645 d V R T L I L K S V L F F F F F - e Y V R * Y * N Q Y W F F F F F - f T C A D I D I K I G F F F F F - Enzymes that do cut: AatII Bce83I BcgI BsaI BsaBI BsmI BsmBI BsrBI BsrGI BssSI Bst1107I EagI EarI Eco57I EcoRI EcoRV MluI NsiI PflMI PvuI PvuII RcaI Enzymes that do not cut: AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI BclI BfiI BglI BglII BplI BpmI Bpu10I Bpu1102I BsaXI BsbI BseRI BsgI BsiWI BspEI BspGI BspLU11I BspMI BsrDI BssHII BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EciI Eco47III EcoNI FseI FspI HgiEII HindIII HpaI KpnI MfeI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI Psp1406I PstI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI