(Linear) MAP of: ./Contig008.seq check: 5321 from: 1 to: 991 Fgr.fasta.screen.Contig8 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:45 .. EcoRI BssSI XcmI | | | GAATTCGGCACGAGGGTTTGATTTTAATACAAGACCATTCATAATCTACACTTCGTCCCCTACATCGCACCACCTGGCCTGTACCATACAGGACTTGGTT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCCAAACTAAAATTATGTTCTGGTAAGTATTAGATGTGAAGCAGGGGATGTAGCGTGGTGGACCGGACATGGTATGTCCTGAACCAA a E F G T R V * F * Y K T I H N L H F V P Y I A P P G L Y H T G L G L - b N S A R G F D F N T R P F I I Y T S S P T S H H L A C T I Q D L V - c I R H E G L I L I Q D H S * S T L R P L H R T T W P V P Y R T W F - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d I R C S P K I K I C S W E Y D V S R G R C R V V Q G T G Y L V Q N - e F E A R P N S K L V L G N M I * V E D G V D C W R A Q V M C S K T - f N P V L T Q N * Y L V M * L R C K T G * M A G G P R Y W V P S P - BssSI PstI XcmI | | | TGGCCCCCTTGTTGAGAGTCAGACGCACGAGACAACATCCGACGCATAATCCTATTACAGTACAGTAGTGGCCTTCTTTAGCTGCAGCCTTCCATTACTC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ACCGGGGGAACAACTCTCAGTCTGCGTGCTCTGTTGTAGGCTGCGTATTAGGATAATGTCATGTCATCACCGGAAGAAATCGACGTCGGAAGGTAATGAG a A P L L R V R R T R Q H P T H N P I T V Q * W P S L A A A F H Y S - b W P P C * E S D A R D N I R R I I L L Q Y S S G L L * L Q P S I T P - c G P L V E S Q T H E T T S D A * S Y Y S T V V A F F S C S L P L L - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d P G R T S L * V C S V V D S A Y D * * L V T T A K K L Q L R G N S - e Q G G Q Q S D S A R S L M R R M I R N C Y L L P R R * S C G E M V - f K A G K N L T L R V L C C G V C L G I V T C Y H G E K A A A K W * E - SmaI VspI AceIII | | | CCCTGGCAGTGATCCTGGGCGTGACGACACCCAATTCCCGGGCTCCATCGCAACAGATTAATCCCTACAGCTCATTTTTTTTTTGGGCAACAGTGTTTGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GGGACCGTCACTAGGACCCGCACTGCTGTGGGTTAAGGGCCCGAGGTAGCGTTGTCTAATTAGGGATGTCGAGTAAAAAAAAAACCCGTTGTCACAAACG a P G S D P G R D D T Q F P G S I A T D * S L Q L I F F L G N S V C - b L A V I L G V T T P N S R A P S Q Q I N P Y S S F F F W A T V F A - c P W Q * S W A * R H P I P G L H R N R L I P T A H F F F G Q Q C L Q - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G Q C H D Q A H R C G I G P S W R L L N I G V A * K K K P C C H K - e G R A T I R P T V V G L E R A G D C C I L G * L E N K K Q A V T N A - f G P L S G P R S S V W N G P E M A V S * D R C S M K K K P L L T Q - StuI BglI | SfiI | | | AACAACATCATCCGACTTTTTCGTGATTGCAACCACCGAATATCATCATGGCGAAGAACGCACCTCTCGGCCTTGCAGGCCTGGTCCTCATGGCAGTTTC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TTGTTGTAGTAGGCTGAAAAAGCACTAACGTTGGTGGCTTATAGTAGTACCGCTTCTTGCGTGGAGAGCCGGAACGTCCGGACCAGGAGTACCGTCAAAG a N N I I R L F R D C N H R I S S W R R T H L S A L Q A W S S W Q F L - b T T S S D F F V I A T T E Y H H G E E R T S R P C R P G P H G S F - c Q H H P T F S * L Q P P N I I M A K N A P L G L A G L V L M A V S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d C C C * G V K E H N C G G F I M M A F F A G R P R A P R T R M A T E - e V V D D S K K T I A V V S Y * * P S S R V E R G Q L G P G * P L K - f L L M M R S K R S Q L W R I D D H R L V C R E A K C A Q D E H C N - DrdII | TCTACTTTTCCTCTGGTTCATTATCCTATCTGGATTAACCTCAACCACTCCGTTTGACAAGACGTATTTCCTCCGCGCCGATACGAGCGACATCACAGGA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AGATGAAAAGGAGACCAAGTAATAGGATAGACCTAATTGGAGTTGGTGAGGCAAACTGTTCTGCATAAAGGAGGCGCGGCTATGCTCGCTGTAGTGTCCT a Y F S S G S L S Y L D * P Q P L R L T R R I S S A P I R A T S Q E - b S T F P L V H Y P I W I N L N H S V * Q D V F P P R R Y E R H H R S - c L L F L W F I I L S G L T S T T P F D K T Y F L R A D T S D I T G - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d R S K R Q N M I R D P N V E V V G N S L V Y K R R A S V L S M V P - e E V K G R T * * G I Q I L R L W E T Q C S T N G G R R Y S R C * L - f R * K E E P E N D * R S * G * G S R K V L R I E E A G I R A V D C S - XmnI NruI BsrDI | NgoAIV SacI | PflMI | | NarI | HindIII | | | | | | | | GCTCGCGACACCACGCAATGGAACTTTTTCTACATCTGTGGCGCCGGCAACAACGACTGCGACGGCGCTCGCGCTGCTCCTGTCATCGGTAAAGCTTGGG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CGAGCGCTGTGGTGCGTTACCTTGAAAAAGATGTAGACACCGCGGCCGTTGTTGCTGACGCTGCCGCGAGCGCGACGAGGACAGTAGCCATTTCGAACCC a L A T P R N G T F S T S V A P A T T T A T A L A L L L S S V K L G - b S R H H A M E L F L H L W R R Q Q R L R R R S R C S C H R * S L G - c A R D T T Q W N F F Y I C G A G N N D C D G A R A A P V I G K A W D - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d A R S V V C H F K K * M Q P A P L L S Q S P A R A A G T M P L A Q - e L E R C W A I S S K R C R H R R C C R S R R R E R Q E Q * R Y L K P - f S A V G R L P V K E V D T A G A V V V A V A S A S S R D D T F S P - AceIII BsaXI BbsI | | | ACTCTAACCCTCGCAACGCGCCCAGCTCGCTCGTTGGCGGTCGCGCTGGCGACACCACCTCCAACCGCCAGTTCTTCCTCTGGAGGTTCGGCTGGGTCTT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TGAGATTGGGAGCGTTGCGCGGGTCGAGCGAGCAACCGCCAGCGCGACCGCTGTGGTGGAGGTTGGCGGTCAAGAAGGAGACCTCCAAGCCGACCCAGAA a T L T L A T R P A R S L A V A L A T P P P T A S S S S G G S A G S S - b L * P S Q R A Q L A R W R S R W R H H L Q P P V L P L E V R L G L - c S N P R N A P S S L V G G R A G D T T S N R Q F F L W R F G W V F - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d S E L G R L A G L E S T P P R A P S V V E L R W N K R Q L N P Q T K - e S * G E C R A W S A R Q R D R Q R C W R W G G T R G R S T R S P R - f V R V R A V R G A R E N A T A S A V G G G V A L E E E P P E A P D - NgoAIV NarI | BsrDI BsmBI| | BpmI BcgI BsaI BsrDI BcgI | EagI BglI || | | | | | | | | | || | CATCCTCATCACCCTGTTCTTCGAGACCATTGCCTTCTTCACCGGCTTCATTGCATGTTGCGGCCGTCTCGGCGCCGGCATCTCCGGCTTCACGTCCATG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GTAGGAGTAGTGGGACAAGAAGCTCTGGTAACGGAAGAAGTGGCCGAAGTAACGTACAACGCCGGCAGAGCCGCGGCCGTAGAGGCCGAAGTGCAGGTAC a S S S P C S S R P L P S S P A S L H V A A V S A P A S P A S R P C - b H P H H P V L R D H C L L H R L H C M L R P S R R R H L R L H V H V - c I L I T L F F E T I A F F T G F I A C C G R L G A G I S G F T S M - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d M R M V R N K S V M A K K V P K M A H Q P R R P A P M E P K V D M - e * G * * G T R R S W Q R R * R S * Q M N R G D R R R C R R S * T W - f E D E D G Q E E L G N G E E G A E N C T A A T E A G A D G A E R G H - BcgI BspMI EagI | BseRI BcgI | PvuI PvuI| | | | | | || | TTCGCCCTGCTCTGCTCCTCTGTCGCCATGTCCCTGATGACTGCTACTTGGGTTCTCGCTCGCACGCTTTCAAGATGCAGGTCGATCGGACTCGATCGGC 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 AAGCGGGACGAGACGAGGAGACAGCGGTACAGGGACTACTGACGATGAACCCAAGAGCGAGCGTGCGAAAGTTCTACGTCCAGCTAGCCTGAGCTAGCCG a S P C S A P L S P C P * * L L L G F S L A R F Q D A G R S D S I G - b R P A L L L C R H V P D D C Y L G S R S H A F K M Q V D R T R S A - c F A L L C S S V A M S L M T A T W V L A R T L S R C R S I G L D R P - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d N A R S Q E E T A M D R I V A V Q T R A R V S E L H L D I P S S R - e T R G A R S R Q R W T G S S Q * K P E R E C A K L I C T S R V R D A - f E G Q E A G R D G H G Q H S S S P N E S A R K * S A P R D S E I P - Bpu1102I BsrBI EarI | SphI | | | | CGCTACACCTTTGGTTTGCTTTGGCATCTTGGGCCGCTCTTTTCATAGCCACCATTCTCTTCTGGCTAAGCATGCGTGGGTGACAAGAGCT 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+- 991 GCGATGTGGAAACCAAACGAAACCGTAGAACCCGGCGAGAAAAGTATCGGTGGTAAGAGAAGACCGATTCGTACGCACCCACTGTTCTCGA a R Y T F G L L W H L G P L F S * P P F S S G * A C V G D K S - b A T P L V C F G I L G R S F H S H H S L L A K H A W V T R A - c L H L W F A L A S W A A L F I A T I L F W L S M R G * Q E - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+- 991 d G S C R Q N A K A D Q A A R K M A V M R K Q S L M R P H C S S - e A V G K T Q K P M K P R E K * L W W E R R A L C A H T V L A - f R * V K P K S Q C R P G S K E Y G G N E E P * A H T P S L L - Enzymes that do cut: AceIII BbsI BcgI BglI BpmI Bpu1102I BsaI BsaXI BseRI BsmBI BspMI BsrBI BsrDI BssSI DrdII EagI EarI EcoRI HindIII NarI NgoAIV NruI PflMI PstI PvuI SacI SfiI SmaI SphI StuI VspI XcmI XmnI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI Bce83I BclI BfiI BglII BplI Bpu10I BsaBI BsbI BsgI BsiWI BsmI BspEI BspGI BspLU11I BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI EciI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HpaI KpnI MfeI MluI MscI NcoI NdeI NheI NotI NsiI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI Psp1406I PvuII RcaI RsrII SacII SalI SanDI SapI ScaI SexAI SgfI SgrAI SnaBI SpeI SrfI Sse8387I Sse8647I SspI SwaI Tth111I XbaI XhoI