(Linear) MAP of: ./Contig009.seq check: 9032 from: 1 to: 842 Fgr.fasta.screen.Contig9 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:45 .. EcoRI BssSI AflII BsaXI | | | | GAATTCGGCACGAGGCTTAACAAGCACACCTTACTTCGACATCTTCGCCTTAAGCAACCGACCCGTTATCCAACGACTTCATCTCCCGACAATTCAGCTC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGAATTGTTCGTGTGGAATGAAGCTGTAGAAGCGGAATTCGTTGGCTGGGCAATAGGTTGCTGAAGTAGAGGGCTGTTAAGTCGAG a E F G T R L N K H T L L R H L R L K Q P T R Y P T T S S P D N S A R - b N S A R G L T S T P Y F D I F A L S N R P V I Q R L H L P T I Q L - c I R H E A * Q A H L T S T S S P * A T D P L S N D F I S R Q F S S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P V L S L L C V K S R C R R R L C G V R * G V V E D G S L E A - e I R C S A * C A C R V E V D E G * A V S G N D L S K M E R C N L E - f F E A R P K V L V G * K S M K A K L L R G T I W R S * R G V I * S - AceIII BbsI BsbI BsaXI | | | | GCCTGTCGTTTCACGAACACTTCGTCTTCTCCAACACGACCTTTTTCGATTAACACCTACTCCGTTTTCGCGTAACAACAGTCAAGATGGTCAGCGAACT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGGACAGCAAAGTGCTTGTGAAGCAGAAGAGGTTGTGCTGGAAAAAGCTAATTGTGGATGAGGCAAAAGCGCATTGTTGTCAGTTCTACCAGTCGCTTGA a L S F H E H F V F S N T T F F D * H L L R F R V T T V K M V S E L - b A C R F T N T S S S P T R P F S I N T Y S V F A * Q Q S R W S A N F - c P V V S R T L R L L Q H D L F R L T P T P F S R N N S Q D G Q R T - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d R R D N * S C K T K E L V V K K S * C R S R K R T V V T L I T L S S - e G T T E R V S R R R W C S R K R N V G V G N E R L L L * S P * R V - f A Q R K V F V E D E G V R G K E I L V * E T K A Y C C D L H D A F - BspMI BsgI NcoI BbsI | HgiEII KpnI BsbI | | | | | | | TTGCCCCGTTTACTCGCCCTTCTTCGGTGCCATGGGCTGCACCTGCGCCATTGTCTTCACCTGTCTCGGTGCCTCTTACGGTACCGCCAAGTCTGGTGTT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AACGGGGCAAATGAGCGGGAAGAAGCCACGGTACCCGACGTGGACGCGGTAACAGAAGTGGACAGAGCCACGGAGAATGCCATGGCGGTTCAGACCACAA a C P V Y S P F F G A M G C T C A I V F T C L G A S Y G T A K S G V - b A P F T R P S S V P W A A P A P L S S P V S V P L T V P P S L V L - c L P R L L A L L R C H G L H L R H C L H L S R C L L R Y R Q V W C W - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d Q G T * E G K K P A M P Q V Q A M T K V Q R P A E * P V A L D P T - e K G R K S A R R R H W P S C R R W Q R * R D R H R K R Y R W T Q H - f K A G N V R G E E T G H A A G A G N D E G T E T G R V T G G L R T N - EciI DrdI BsaI | | | GGTATCGCCGCTATGGGTGTCCTCCGCCCTGACTTGATCGTCAAGAACATTGTTCCCGTCATTATGGCTGGTATCATTGGTATCTACGGTCTCGTCGTCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CCATAGCGGCGATACCCACAGGAGGCGGGACTGAACTAGCAGTTCTTGTAACAAGGGCAGTAATACCGACCATAGTAACCATAGATGCCAGAGCAGCAGA a G I A A M G V L R P D L I V K N I V P V I M A G I I G I Y G L V V S - b V S P L W V S S A L T * S S R T L F P S L W L V S L V S T V S S S - c Y R R Y G C P P P * L D R Q E H C S R H Y G W Y H W Y L R S R R L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d P I A A I P T R R G S K I T L F M T G T M I A P I M P I * P R T T - e Q Y R R * P H G G G Q S S R * S C Q E R * * P Q Y * Q Y R R D R R R - f T D G S H T D E A R V Q D D L V N N G D N H S T D N T D V T E D D - Bce83I BsmBI | BsaI ApaBI XcmI BspMI BsaI BsaI | | | | | | | | CAGTCCTTATCTCCGATGGTCTCAAGCAGGACTTGCCCCTGTTCACTAGCTTCATCCAATTCGGTGCTGGTCTTTCCGTTGGTCTCGCAGGTCTCGCTGC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GTCAGGAATAGAGGCTACCAGAGTTCGTCCTGAACGGGGACAAGTGATCGAAGTAGGTTAAGCCACGACCAGAAAGGCAACCAGAGCGTCCAGAGCGACG a V L I S D G L K Q D L P L F T S F I Q F G A G L S V G L A G L A A - b Q S L S P M V S S R T C P C S L A S S N S V L V F P L V S Q V S L P - c S P Y L R W S Q A G L A P V H * L H P I R C W S F R W S R R S R C - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d E T R I E S P R L C S K G R N V L K M W N P A P R E T P R A P R A A - e L G * R R H D * A P S A G T * * S * G I R H Q D K R Q D R L D R Q - f * D K D G I T E L L V Q G Q E S A E D L E T S T K G N T E C T E S - EarI BsmBI | | | CGGTTTCGCCATTGGTATTGTCGGTGATGCTGGTGTCCGAGGAACTGCCCAACAGCCCCGTCTCTTCGTCGGAATGATTCTGATTCTCATTTTCGCCGAA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCCAAAGCGGTAACCATAACAGCCACTACGACCACAGGCTCCTTGACGGGTTGTCGGGGCAGAGAAGCAGCCTTACTAAGACTAAGAGTAAAAGCGGCTT a G F A I G I V G D A G V R G T A Q Q P R L F V G M I L I L I F A E - b V S P L V L S V M L V S E E L P N S P V S S S E * F * F S F S P K - c R F R H W Y C R * C W C P R N C P T A P S L R R N D S D S H F R R S - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d P K A M P I T P S A P T R P V A W C G R R K T P I I R I R M K A S - e R N R W Q Y Q R H H Q H G L F Q G V A G D R R R F S E S E * K R R - f G T E G N T N D T I S T D S S S G L L G T E E D S H N Q N E N E G F - Tth111I BsaI RcaI SalI | BsbI | | | | | GTCCTCGGTCTCTATGGTCTTATTGTTGCTCTGCTCATGAACTCCAAGGCCACCGTCGACGCTGTCTGCTAAACGGCCAACACGACACGGCCTGCTCGGA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CAGGAGCCAGAGATACCAGAATAACAACGAGACGAGTACTTGAGGTTCCGGTGGCAGCTGCGACAGACGATTTGCCGGTTGTGCTGTGCCGGACGAGCCT a V L G L Y G L I V A L L M N S K A T V D A V C * T A N T T R P A R N - b S S V S M V L L L L C S * T P R P P S T L S A K R P T R H G L L G - c P R S L W S Y C C S A H E L Q G H R R R C L L N G Q H D T A C S E - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d T R P R * P R I T A R S M F E L A V T S A T Q * V A L V V R G A R - e L G R D R H D * Q Q E A * S S W P W R R R Q R S F P W C S V A Q E S - f D E T E I T K N N S Q E H V G L G G D V S D A L R G V R C P R S P - BsrBI BssSI | BsrDI | | | ACCCAGCTTGACAAGAACCTACTCAAACACACGAGCGGGTCTGAGCCCTGGCACAAATCAATAAGATCCTATATGGGGTTACGAAATTCCCTGGCTCTTC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TGGGTCGAACTGTTCTTGGATGAGTTTGTGTGCTCGCCCAGACTCGGGACCGTGTTTAGTTATTCTAGGATATACCCCAATGCTTTAAGGGACCGAGAAG a P A * Q E P T Q T H E R V * A L A Q I N K I L Y G V T K F P G S S - b T Q L D K N L L K H T S G S E P W H K S I R S Y M G L R N S L A L H - c P S L T R T Y S N T R A G L S P G T N Q * D P I W G Y E I P W L F - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d F G A Q C S G V * V C S R T Q A R A C I L L I R Y P T V F N G P E E - e G L K V L V * E F V R A P R L G P V F * Y S G I H P * S I G Q S K - f V W S S L F R S L C V L P D S G Q C L D I L D * I P N R F E R A R - EarI SapI BsrBI | | ATTGCGACATGGATTCAAGAGCGGGAATTGGACACTTGGGCA 801 ---------+---------+---------+---------+-- 842 TAACGCTGTACCTAAGTTCTCGCCCTTAACCTGTGAACCCGT a L R H G F K S G N W T L G - b C D M D S R A G I G H L G - c I A T W I Q E R E L D T W A - 801 ---------+---------+---------+---------+-- 842 d N R C P N L L P F Q V S P C - e M A V H I * S R S N S V Q A - f * Q S M S E L A P I P C K P - Enzymes that do cut: AceIII AflII ApaBI BbsI Bce83I BsaI BsaXI BsbI BsgI BsmBI BspMI BsrBI BsrDI BssSI DrdI EarI EciI EcoRI HgiEII KpnI NcoI RcaI SalI SapI Tth111I XcmI Enzymes that do not cut: AatII AhdI AlwNI ApaI ApaLI AscI AvrII BamHI BcgI BclI BfiI BglI BglII BplI BpmI Bpu10I Bpu1102I BsaBI BseRI BsiWI BsmI BspEI BspGI BspLU11I BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdII EagI Eco47III Eco57I EcoNI EcoRV FseI FspI HindIII HpaI MfeI MluI MscI NarI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RsrII SacI SacII SanDI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XbaI XhoI XmnI