(Linear) MAP of: ./Contig011.seq check: 475 from: 1 to: 753 Fgr.fasta.screen.Contig11 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI MfeI AhdI EagI | | | | | GAATTCGGCACGAGGGCAATTGGACGCCGACGAATTGTCCCATCGGCCGAGATGCTCCCACAACGAATTGCGCGGGCCTCGGCCCTGCGTAGCGGCATGG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCCGTTAACCTGCGGCTGCTTAACAGGGTAGCCGGCTCTACGAGGGTGTTGCTTAACGCGCCCGGAGCCGGGACGCATCGCCGTACC a E F G T R A I G R R R I V P S A E M L P Q R I A R A S A L R S G M A - b N S A R G Q L D A D E L S H R P R C S H N E L R G P R P C V A A W - c I R H E G N W T P T N C P I G R D A P T T N C A G L G P A * R H G - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P C N S A S S N D W R G L H E W L S N R P G R G Q T A A H - e N P V L A I P R R R I T G D A S I S G C R I A R A E A R R L P M - f I R C S P L Q V G V F Q G M P R S A G V V F Q A P R P G A Y R C P - PvuII Pfl1108I DrdI BclI NarI | | | | | CAGCTGCTCGACGACTTCCTACGATCCAGCGCCGAACATTCCTCCCCGATCAGTACACCGACAAGAAGGTCATTGATCAGAAGTACCCCGAGGCGCCCAG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GTCGACGAGCTGCTGAAGGATGCTAGGTCGCGGCTTGTAAGGAGGGGCTAGTCATGTGGCTGTTCTTCCAGTAACTAGTCTTCATGGGGCTCCGCGGGTC a A A R R L P T I Q R R T F L P D Q Y T D K K V I D Q K Y P E A P S - b Q L L D D F L R S S A E H S S P I S T P T R R S L I R S T P R R P A - c S C S T T S Y D P A P N I P P R S V H R Q E G H * S E V P R G A Q - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d C S S S S K R R D L A S C E E G I L V G V L L D N I L L V G L R G - e A A A R R S G V I W R R V N R G S * Y V S L F T M S * F Y G S A G L - f L Q E V V E * S G A G F M G G R D T C R C S P * Q D S T G R P A W - EciI BamHI | | CATGACCGAGGCGGAGGACCCCGGAATGAACGGCGGCTACATCAACCCACCCCGAATTAAGCGACAGTTCCGTGACCCTCACGGCAACTGGTGGGATCCC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GTACTGGCTCCGCCTCCTGGGGCCTTACTTGCCGCCGATGTAGTTGGGTGGGGCTTAATTCGCTGTCAAGGCACTGGGAGTGCCGTTGACCACCCTAGGG a M T E A E D P G M N G G Y I N P P R I K R Q F R D P H G N W W D P - b * P R R R T P E * T A A T S T H P E L S D S S V T L T A T G G I P - c H D R G G G P R N E R R L H Q P T P N * A T V P * P S R Q L V G S P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d A H G L R L V G S H V A A V D V W G S N L S L E T V R V A V P P I G - e M V S A S S G P I F P P * M L G G R I L R C N R S G * P L Q H S G - f C S R P P P G R F S R R S C * G V G F * A V T G H G E R C S T P D - BssSI XmnI | XmnI HgiEII | | | | CAGGAGCGACGAAACTTTGGTGAACCCATTCACGAGGATAACGATGTTTTGGGAATCTTTTCTCCCTGGGAGTACACTTGGACCACCGCCGGTCCCGGTG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GTCCTCGCTGCTTTGAAACCACTTGGGTAAGTGCTCCTATTGCTACAAAACCCTTAGAAAAGAGGGACCCTCATGTGAACCTGGTGGCGGCCAGGGCCAC a Q E R R N F G E P I H E D N D V L G I F S P W E Y T W T T A G P G A - b R S D E T L V N P F T R I T M F W E S F L P G S T L G P P P V P V - c G A T K L W * T H S R G * R C F G N L F S L G V H L D H R R S R C - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d L L S S V K T F G N V L I V I N Q S D K R G P L V S P G G G T G T - e W S R R F K P S G M * S S L S T K P I K E G Q S Y V Q V V A P G P - f G P A V F S Q H V W E R P Y R H K P F R K E R P T C K S W R R D R H - RcaI | CCGTCATGGTCGGAACCTTTATCGCCGTTTTCATGAGCGTCACTGGAATTGTTTATCTTAACTACCCCGACCGCCCGGCCTACCCCCGAGCCTTTGAGGG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GGCAGTACCAGCCTTGGAAATAGCGGCAAAAGTACTCGCAGTGACCTTAACAAATAGAATTGATGGGGCTGGCGGGCCGGATGGGGGCTCGGAAACTCCC a V M V G T F I A V F M S V T G I V Y L N Y P D R P A Y P R A F E G - b P S W S E P L S P F S * A S L E L F I L T T P T A R P T P E P L R V - c R H G R N L Y R R F H E R H W N C L S * L P R P P G L P P S L * G - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d G D H D S G K D G N E H A D S S N N I K V V G V A R G V G S G K L - e A T M T P V K I A T K M L T V P I T * R L * G S R G A * G R A K S P - f R * P R F R * R R K * S R * Q F Q K D * S G R G G P R G G L R Q P - BamHI BpmI BsaBI|AflII BsrGI | || | | TGGTCTGGAGCGAGAGCTTGGTGGACCAGGAGCTACAAGGGCTCGTATGGAGGGAGATGAGGATCCTTAAGCAATATGCGTTTGTACATAAAGAAATGGA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 ACCAGACCTCGCTCTCGAACCACCTGGTCCTCGATGTTCCCGAGCATACCTCCCTCTACTCCTAGGAATTCGTTATACGCAAACATGTATTTCTTTACCT a G L E R E L G G P G A T R A R M E G D E D P * A I C V C T * R N G - b V W S E S L V D Q E L Q G L V W R E M R I L K Q Y A F V H K E M E - c W S G A R A W W T R S Y K G S Y G G R * G S L S N M R L Y I K K W N - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d T T Q L S L K T S W S S C P S T H L S I L I R L C Y A N T C L S I S - e P R S R S S P P G P A V L A R I S P S S S G * A I H T Q V Y L F P - f H D P A L A Q H V L L * L P E Y P P L H P D K L L I R K Y M F F H - BsmI BsrGI BsiWI PmlI | | | | ATGCAAGAGATTGAATCGCGTACAAGGAATTGTGATGTACAATGGTATGACTAAACAGGACTATTAACATCGTACGCAGTCACGTGGGTTGCATAAAAAC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TACGTTCTCTAACTTAGCGCATGTTCCTTAACACTACATGTTACCATACTGATTTGTCCTGATAATTGTAGCATGCGTCAGTGCACCCAACGTATTTTTG a M Q E I E S R T R N C D V Q W Y D * T G L L T S Y A V T W V A * K P - b C K R L N R V Q G I V M Y N G M T K Q D Y * H R T Q S R G L H K N - c A R D * I A Y K E L * C T M V * L N R T I N I V R S H V G C I K T - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d H L L N F R T C P I T I Y L P I V L C S * * C R V C D R P N C L F - e I C S I S D R V L F Q S T C H Y S * V P S N V D Y A T V H T A Y F - f F A L S Q I A Y L S N H H V I T H S F L V I L M T R L * T P Q M F V - CAGTGCTGATGTAGTGGTTAATATAAATGTGGGATCAAAAAAAAAAAAAAAAA 701 ---------+---------+---------+---------+---------+--- 753 GTCACGACTACATCACCAATTATATTTACACCCTAGTTTTTTTTTTTTTTTTT a V L M * W L I * M W D Q K K K K K - b Q C * C S G * Y K C G I K K K K K - c S A D V V V N I N V G S K K K K K - 701 ---------+---------+---------+---------+---------+--- 753 d W H Q H L P * Y L H P I L F F F F F - e G T S I Y H N I Y I H S * F F F F F - f L A S T T T L I F T P D F F F F F - Enzymes that do cut: AflII AhdI BamHI BclI BpmI BsaBI BsiWI BsmI BsrGI BssSI DrdI EagI EciI EcoRI HgiEII MfeI NarI Pfl1108I PmlI PvuII RcaI XmnI Enzymes that do not cut: AatII AceIII AlwNI ApaI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BfiI BglI BglII BplI Bpu10I Bpu1102I BsaI BsaXI BsbI BseRI BsgI BsmBI BspEI BspGI BspLU11I BspMI BsrBI BsrDI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdII EarI Eco47III Eco57I EcoNI EcoRV FseI FspI HindIII HpaI KpnI MluI MscI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PshAI Psp1406I PstI PvuI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI