(Linear) MAP of: ./Contig012.seq check: 2676 from: 1 to: 822 Fgr.fasta.screen.Contig12 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI BsrBI BglI EagI | | | | | GAATTCGGCACGAGGCTCCACTCCTATCTCTGATCGCTCTTTGTCATCTGGCAAGATGTTCAAGAGCGGCATTTCCTCCTTCGCCCGCGCGGCTCGCCCG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGAGGTGAGGATAGAGACTAGCGAGAAACAGTAGACCGTTCTACAAGTTCTCGCCGTAAAGGAGGAAGCGGGCGCGCCGAGCGGGC a E F G T R L H S Y L * S L F V I W Q D V Q E R H F L L R P R G S P G - b N S A R G S T P I S D R S L S S G K M F K S G I S S F A R A A R P - c I R H E A P L L S L I A L C H L A R C S R A A F P P S P A R L A R - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P E V G I E S R E K D D P L I N L L P M E E K A R A A R G - e N P V L S W E * R Q D S K T M Q C S T * S R C K R R R G R P E G - f I R C S A G S R D R I A R Q * R A L H E L A A N G G E G A R S A R - BpmI NgoAIV BsaXI BsrBI | PflMI NarI | SexAI | | | | | | | GCCGTCCTTCCTCGACGTGCCCTCCGACCTTCCGCTCTCCGACTTCCCATCTCCAGCCGATGGGCCAGCACTGGCGTTGGCGCCGGCAAGATTCACCAGG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGGCAGGAAGGAGCTGCACGGGAGGCTGGAAGGCGAGAGGCTGAAGGGTAGAGGTCGGCTACCCGGTCGTGACCGCAACCGCGGCCGTTCTAAGTGGTCC a R P S S T C P P T F R S P T S H L Q P M G Q H W R W R R Q D S P G - b A V L P R R A L R P S A L R L P I S S R W A S T G V G A G K I H Q V - c P S F L D V P S D L P L S D F P S P A D G P A L A L A P A R F T R - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d A T R G R R A R R G E A R R S G M E L R H A L V P T P A P L I * W - e P R G E E V H G G V K R E G V E W R W G I P W C Q R Q R R C S E G P - f G D K R S T G E S R G S E S K G D G A S P G A S A N A G A L N V L - HindIII Bce83I | MscI | | AatII Bpu1102I BstXI | | | XhoI | | | | | | | TCATCGGTGCCGTCGTTGACGTCAAGTTCGATGGTGCTAAGCTCCCTGCCATTCTCAACTCTCTTGAGTGCCAGAACAATGGCCAGAAGCTTGTCCTCGA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGTAGCCACGGCAGCAACTGCAGTTCAAGCTACCACGATTCGAGGGACGGTAAGAGTTGAGAGAACTCACGGTCTTGTTACCGGTCTTCGAACAGGAGCT a H R C R R * R Q V R W C * A P C H S Q L S * V P E Q W P E A C P R - b I G A V V D V K F D G A K L P A I L N S L E C Q N N G Q K L V L E - c S S V P S L T S S S M V L S S L P F S T L L S A R T M A R S L S S R - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d T M P A T T S T L N S P A L S G A M R L E R S H W F L P W F S T R S - e * R H R R Q R * T R H H * A G Q W E * S E Q T G S C H G S A Q G R - f D D T G D N V D L E I T S L E R G N E V R K L A L V I A L L K D E - BsaXI PinAI | PflMI BsrDI NcoI BsaI BspGI SgrAI | | | | | | | | GGTTTCCCAACATTTGGGTGAGAGCGTCGTCCGTTGCATTGCCATGGACGGTACTGAGGGTCTCGTCCGAGGCGCTACTGTCCAGGACACCGGTGCTCCC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CCAAAGGGTTGTAAACCCACTCTCGCAGCAGGCAACGTAACGGTACCTGCCATGACTCCCAGAGCAGGCTCCGCGATGACAGGTCCTGTGGCCACGAGGG a G F P T F G * E R R P L H C H G R Y * G S R P R R Y C P G H R C S H - b V S Q H L G E S V V R C I A M D G T E G L V R G A T V Q D T G A P - c F P N I W V R A S S V A L P W T V L R V S S E A L L S R T P V L P - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d T E W C K P S L T T R Q M A M S P V S P R T R P A V T W S V P A G - e P K G V N P H S R R G N C Q W P R Y Q P D R G L R * Q G P C R H E - f L N G L M Q T L A D D T A N G H V T S L T E D S A S S D L V G T S G - Psp1406I AhdI RcaI | BstEII | | | | ATCACTATTCCCGTCGGCCCCGCGACTCTTGGTCGTATCATGAACGTTACTGGTGACCCCATTGACGAGCGTGGTCCTATCAAGACTGACAAGCGCCTTC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TAGTGATAAGGGCAGCCGGGGCGCTGAGAACCAGCATAGTACTTGCAATGACCACTGGGGTAACTGCTCGCACCAGGATAGTTCTGACTGTTCGCGGAAG a H Y S R R P R D S W S Y H E R Y W * P H * R A W S Y Q D * Q A P S - b I T I P V G P A T L G R I M N V T G D P I D E R G P I K T D K R L P - c S L F P S A P R L L V V S * T L L V T P L T S V V L S R L T S A F - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d M V I G T P G A V R P R I M F T V P S G M S S R P G I L V S L R R - e W * * E R R G R S E Q D Y * S R * Q H G W Q R A H D * * S Q C A G E - f D S N G D A G R S K T T D H V N S T V G N V L T T R D L S V L A K - Sse8647I Bpu10I | BcgI BcgI | | | | CTATCCACACCGAAGCCCCCGAGTTCGTTGAGCAGTCCACCTCTGCTGAGGTCCTCGTCACTGGTATCAAGGTTGTCGATCTTCTTGCCCCCTACGCCCG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GATAGGTGTGGCTTCGGGGGCTCAAGCAACTCGTCAGGTGGAGACGACTCCAGGAGCAGTGACCATAGTTCCAACAGCTAGAAGAACGGGGGATGCGGGC a Y P H R S P R V R * A V H L C * G P R H W Y Q G C R S S C P L R P - b I H T E A P E F V E Q S T S A E V L V T G I K V V D L L A P Y A R - c L S T P K P P S S L S S P P L L R S S S L V S R L S I F L P P T P V - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d G I W V S A G S N T S C D V E A S T R T V P I L T T S R R A G * A R - e * G C R L G R T R Q A T W R Q Q P G R * Q Y * P Q R D E Q G R R G - f R D V G F G G L E N L L G G R S L D E D S T D L N D I K K G G V G - EarI BsaI | BbsI BbsI | | | | TGGTGGAAAGATTGGTCTCTTCGGTGGTGCCGGTGTCGGCAAGACTGTCTTCATTCAGGAGCTTATCAACAACATCGCCAGAGCCCACGGTGGTTACTGC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 ACCACCTTTCTAACCAGAGAAGCCACCACGGCCACAGCCGTTCTGACAGAAGTAAGTCCTCGAATAGTTGTTGTAGCGGTCTCGGGTGCCACCAATGACG a W W K D W S L R W C R C R Q D C L H S G A Y Q Q H R Q S P R W L L R - b G G K I G L F G G A G V G K T V F I Q E L I N N I A R A H G G Y C - c V E R L V S S V V P V S A R L S S F R S L S T T S P E P T V V T A - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d P P F I P R K P P A P T P L V T K M * S S I L L M A L A W P P * Q - e H H F S Q D R R H H R H R C S Q R * E P A * * C C R W L G R H N S - f T T S L N T E E T T G T D A L S D E N L L K D V V D G S G V T T V A - HgiEII Eco57I PshAI AceIII | BglI | BbsI | MscI | | | | | | | GTCTTCACTGGTGTCGGTGAGCGTACCCGTGAGGGTAACGAGCTGTGCCACAAAGGCAGGAGACTTCCGTCTTCAGGGTGATGGCCAGTCCAAGGCGTCC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CAGAAGTGACCACAGCCACTCGCATGGGCACTCCCATTGCTCGACACGGTGTTTCCGTCCTCTGAAGGCAGAAGTCCCACTACCGGTCAGGTTCCGCAGG a L H W C R * A Y P * G * R A V P Q R Q E T S V F R V M A S P R R P - b V F T G V G E R T R E G N E L C H K G R R L P S S G * W P V Q G V L - c S S L V S V S V P V R V T S C A T K A G D F R L Q G D G Q S K A S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d T K V P T P S R V R S P L S S H W L P L L S G D E P H H G T W P T - e R R * Q H R H A Y G H P Y R A T G C L C S V E T K L T I A L G L R G - f D E S T D T L T G T L T V L Q A V F A P S K R R * P S P W D L A D - TGGATTTCGGCAGATGAATGAA 801 ---------+---------+-- 822 ACCTAAAGCCGTCTACTTACTT a G F R Q M N E - b D F G R * M - c W I S A D E * - 801 ---------+---------+-- 822 d R S K P L H I F - e P N R C I F S - f Q I E A S S H - Enzymes that do cut: AatII AceIII AhdI BbsI Bce83I BcgI BglI BpmI Bpu10I Bpu1102I BsaI BsaXI BspGI BsrBI BsrDI BssSI BstEII BstXI EagI EarI Eco57I EcoRI HgiEII HindIII MscI NarI NcoI NgoAIV PflMI PinAI PshAI Psp1406I RcaI SexAI SgrAI Sse8647I XhoI Enzymes that do not cut: AflII AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BclI BfiI BglII BplI BsaBI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspLU11I BspMI BsrGI BssHII Bst1107I Bsu36I ClaI DraI DraIII DrdI DrdII EciI Eco47III EcoNI EcoRV FseI FspI HpaI KpnI MfeI MluI NdeI NheI NotI NruI NsiI NspV PacI Pfl1108I PmeI PmlI PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI ScaI SfiI SgfI SmaI SnaBI SpeI SphI SrfI Sse8387I SspI StuI SwaI Tth111I VspI XbaI XcmI XmnI