(Linear) MAP of: ./Contig013.seq check: 7032 from: 1 to: 702 Fgr.fasta.screen.Contig13 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI BssSI | | | GAATTCGGCACGAGGGCAACTTTTCTCTTTTTTTCGAGCAACCTTCATTCGCCTTCACATCCGGCACGCAAACCACGAGCCTCTGCCGACTTCAACGACC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCCGTTGAAAAGAGAAAAAAAGCTCGTTGGAAGTAAGCGGAAGTGTAGGCCGTGCGTTTGGTGCTCGGAGACGGCTGAAGTTGCTGG a E F G T R A T F L F F S S N L H S P S H P A R K P R A S A D F N D Q - b N S A R G Q L F S F F R A T F I R L H I R H A N H E P L P T S T T - c I R H E G N F S L F F E Q P S F A F T S G T Q T T S L C R L Q R P - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F E A R P C S K E K K R A V K M R R * M R C A F W S G R G V E V V - e N P V L A V K R K K E L L R * E G E C G A R L G R A E A S K L S - f I R C S P L K E R K K S C G E N A K V D P V C V V L R Q R S * R G - BseRI | AATACAGACAAGATGCCTCCCAAGTTCGACCCCAATGAGGTTAAGGTGATCCACCTCCGCGCCACTGGTGGTGAGGTCGGTGCCTCCTCTGCTCTTGCTC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TTATGTCTGTTCTACGGAGGGTTCAAGCTGGGGTTACTCCAATTCCACTAGGTGGAGGCGCGGTGACCACCACTCCAGCCACGGAGGAGACGAGAACGAG a Y R Q D A S Q V R P Q * G * G D P P P R H W W * G R C L L C S C S - b N T D K M P P K F D P N E V K V I H L R A T G G E V G A S S A L A P - c I Q T R C L P S S T P M R L R * S T S A P L V V R S V P P L L L L - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d L V S L I G G L N S G L S T L T I W R R A V P P S T P A E E A R A - e W Y L C S A E W T R G W H P * P S G G G R W Q H H P R H R R Q E Q E - f I C V L H R G L E V G I L N L H D V E A G S T T L D T G G R S K S - BbsI BsaI BsrDI | StuI HindIII | | | | | CCAAGATTGGTCCTCTGGGTCTCTCTCCCAAGAAGGTCGGAGAAGACATTGCCAAGGCTACTGGCGACTGGAAAGGCCTGCGCGTAACTGTCAAGCTTAC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GGTTCTAACCAGGAGACCCAGAGAGAGGGTTCTTCCAGCCTCTTCTGTAACGGTTCCGATGACCGCTGACCTTTCCGGACGCGCATTGACAGTTCGAATG a Q D W S S G S L S Q E G R R R H C Q G Y W R L E R P A R N C Q A Y - b K I G P L G L S P K K V G E D I A K A T G D W K G L R V T V K L T - c P R L V L W V S L P R R S E K T L P R L L A T G K A C A * L S S L P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G L I P G R P R E G L F T P S S M A L A V P S Q F P R R T V T L S V - e W S Q D E P D R E W S P R L L C Q W P * Q R S S L G A R L Q * A * - f G L N T R Q T E R G L L D S F V N G L S S A V P F A Q A Y S D L K - BsmBI Bce83I | | CATCCAGAACCGTCAGGCTGCCGTCTCTGTTGTTCCCACTGCTTCTTCTCTCATCATCAAGGCCCTCAAGGAGCCCCCACGCGACCGCAAGAAGGAGAAG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GTAGGTCTTGGCAGTCCGACGGCAGAGACAACAAGGGTGACGAAGAAGAGAGTAGTAGTTCCGGGAGTTCCTCGGGGGTGCGCTGGCGTTCTTCCTCTTC a H P E P S G C R L C C S H C F F S H H Q G P Q G A P T R P Q E G E E - b I Q N R Q A A V S V V P T A S S L I I K A L K E P P R D R K K E K - c S R T V R L P S L L F P L L L L S S S R P S R S P H A T A R R R R - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d M W F R * A A T E T T G V A E E R M M L A R L S G G R S R L F S F - e W G S G D P Q R R Q Q E W Q K K E * * * P G * P A G V R G C S P S - f G D L V T L S G D R N N G S S R R E D D L G E L L G W A V A L L L L - Sse8647I KpnI | | AACATCAAGCACAACAAGTCTGTCGCCCTCGACGAGATCATTGAGATCGCCCGCACCATGCGATACAAGTCTTTCGCCAAGGACCTCTCTGGTACCGTCA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TTGTAGTTCGTGTTGTTCAGACAGCGGGAGCTGCTCTAGTAACTCTAGCGGGCGTGGTACGCTATGTTCAGAAAGCGGTTCCTGGAGAGACCATGGCAGT a H Q A Q Q V C R P R R D H * D R P H H A I Q V F R Q G P L W Y R Q - b N I K H N K S V A L D E I I E I A R T M R Y K S F A K D L S G T V K - c T S S T T S L S P S T R S L R S P A P C D T S L S P R T S L V P S - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d F M L C L L D T A R S S I M S I A R V M R Y L D K A L S R E P V T - e S C * A C C T Q R G R R S * Q S R G C W A I C T K R W P G R Q Y R * - f V D L V V L R D G E V L D N L D G A G H S V L R E G L V E R T G D - BsbI BstXI BfiI | | | AGGAGATTCTCGGAACCGCCTACAGTGTTGGCTGCCAGGTTGATGGCAAGCCTCCCCAGTCTGTCATTGAGGCCATTGACAGCGGCGACATCGACATCGC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TCCTCTAAGAGCCTTGGCGGATGTCACAACCGACGGTCCAACTACCGTTCGGAGGGGTCAGACAGTAACTCCGGTAACTGTCGCCGCTGTAGCTGTAGCG a G D S R N R L Q C W L P G * W Q A S P V C H * G H * Q R R H R H R - b E I L G T A Y S V G C Q V D G K P P Q S V I E A I D S G D I D I A - c R R F S E P P T V L A A R L M A S L P S L S L R P L T A A T S T S P - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d L S I R P V A * L T P Q W T S P L G G W D T M S A M S L P S M S M A - e P S E R F R R C H Q S G P Q H C A E G T Q * Q P W Q C R R C R C R - f L L N E S G G V T N A A L N I A L R G L R D N L G N V A A V D V D - BseRI EcoRI BseRI BsaI | | | | CGAGGAGTAAATTTGATCTCACGAATTCAAATACCACAAAACAACAACAATAGATCCATTGTCTGATGGTCTCCTCATCAACCAAAAAAAAAAAAAAAAA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GCTCCTCATTTAAACTAGAGTGCTTAAGTTTATGGTGTTTTGTTGTTGTTATCTAGGTAACAGACTACCAGAGGAGTAGTTGGTTTTTTTTTTTTTTTTT a R G V N L I S R I Q I P Q N N N N R S I V * W S P H Q P K K K K K K - b E E * I * S H E F K Y H K T T T I D P L S D G L L I N Q K K K K K - c R S K F D L T N S N T T K Q Q Q * I H C L M V S S S T K K K K K K - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d S S Y I Q D * S N L Y W L V V V I S G N D S P R R M L W F F F F F - e R P T F K I E R I * I G C F L L L L D M T Q H D G * * G F F F F F - f G L L L N S R V F E F V V F C C C Y I W Q R I T E E D V L F F F F F - AA 701 -- 702 TT a - b - c - 701 -- 702 d F - e F - f - Enzymes that do cut: BbsI Bce83I BfiI BsaI BsbI BseRI BsmBI BsrDI BssSI BstXI EcoRI HindIII KpnI Sse8647I StuI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BcgI BclI BglI BglII BplI BpmI Bpu10I Bpu1102I BsaBI BsaXI BsgI BsiWI BsmI BspEI BspGI BspLU11I BspMI BsrBI BsrGI BssHII Bst1107I BstEII Bsu36I ClaI DraI DraIII DrdI DrdII EagI EarI EciI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I SspI SwaI Tth111I VspI XbaI XcmI XhoI XmnI