(Linear) MAP of: ./Contig014.seq check: 2279 from: 1 to: 830 Fgr.fasta.screen.Contig14 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI SalI | | | GAATTCGGCACGAGGCAAAGTCGACGAAACAGCAGGAAACTCTAAGCCAACTAAACCCTCATTCGCCGTCGCTCCTTCAACCCTTATTTTTTCGCCAAAT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGTTTCAGCTGCTTTGTCGTCCTTTGAGATTCGGTTGATTTGGGAGTAAGCGGCAGCGAGGAAGTTGGGAATAAAAAAGCGGTTTA a E F G T R Q S R R N S R K L * A N * T L I R R R S F N P Y F F A K * - b N S A R G K V D E T A G N S K P T K P S F A V A P S T L I F S P N - c I R H E A K S T K Q Q E T L S Q L N P H S P S L L Q P L F F R Q I - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P V L C L R R F L L F S * A L * V R M R R R E K L G * K K A L - e I R C S A F D V F C C S V R L W S F G * E G D S R * G K N K R W I - f F E A R P L T S S V A P F E L G V L G E N A T A G E V R I K E G F - BseRI Pfl1108I | | AGATCGCCTCTCCTTTTATCTCTTTTGGACTTACTTTTCTCTTGTTTACACTCACGGTTCTTGTTCCTCTACGCTTCCTTTTTCTCCTCCCCTACGACAT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TCTAGCGGAGAGGAAAATAGAGAAAACCTGAATGAAAAGAGAACAAATGTGAGTGCCAAGAACAAGGAGATGCGAAGGAAAAAGAGGAGGGGATGCTGTA a I A S P F I S F G L T F L L F T L T V L V P L R F L F L L P Y D I - b R S P L L L S L L D L L F S C L H S R F L F L Y A S F F S S P T T S - c D R L S F Y L F W T Y F S L V Y T H G S C S S T L P F S P P L R H - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d Y I A E G K I E K P S V K R K N V S V T R T G R R K R K R R G * S M - e S R R E K * R K Q V * K E R T * V * P E Q E E V S G K E G G R R C - f L D G R R K D R K S K S K E Q K C E R N K N R * A E K K E E G V V - BamHI BspEI Bce83I | | | CGCGTGCATTTCCTTGGTAAGCGGATCCGGGAGGCAGCCCGATCACCGCCAGACGATAGCCCATCATGTCCGGACGATACGAAAGAGTCAATGCTCAAGA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GCGCACGTAAAGGAACCATTCGCCTAGGCCCTCCGTCGGGCTAGTGGCGGTCTGCTATCGGGTAGTACAGGCCTGCTATGCTTTCTCAGTTACGAGTTCT a A C I S L V S G S G R Q P D H R Q T I A H H V R T I R K S Q C S R - b R A F P W * A D P G G S P I T A R R * P I M S G R Y E R V N A Q D - c R V H F L G K R I R E A A R S P P D D S P S C P D D T K E S M L K T - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d A H M E K T L P D P L C G S * R W V I A W * T R V I R F L * H E L - e R T C K R P L R I R S A A R D G G S S L G D H G S S V F S D I S L - f D R A N G Q Y A S G P P L G I V A L R Y G M M D P R Y S L T L A * S - BseRI BseRI BpmI XhoI | | | | | CGAGGAGGACTTTCATAATAACAACAACAACAACAACAACAACCGCATATCTCCAGTCCCACACTCGCCACCGCCCTCATTTCACTCTCGAGCCCCCTCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GCTCCTCCTGAAAGTATTATTGTTGTTGTTGTTGTTGTTGTTGGCGTATAGAGGTCAGGGTGTGAGCGGTGGCGGGAGTAAAGTGAGAGCTCGGGGGAGA a R G G L S * * Q Q Q Q Q Q Q P H I S S P T L A T A L I S L S S P L S - b E E D F H N N N N N N N N N R I S P V P H S P P P S F H S R A P S - c R R T F I I T T T T T T T T A Y L Q S H T R H R P H F T L E P P L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R P P S E Y Y C C C C C C C G C I E L G V S A V A R M E S E L G R - e V L L V K M I V V V V V V V V A Y R W D W V R W R G * K V R S G G R - f S S S K * L L L L L L L L L R M D G T G C E G G G E N * E R A G E - AlwNI Bpu10I SalI BsbI DrdI Tth111I | | | | | | | CCTCAGCGCCAAGTCGACAACACTCTCGCCGATGCCTTTGACGATGACGATGATAGCGACGATGAAGTCGATGACCGACAGCGTCTGATGCGACAAAACT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GGAGTCGCGGTTCAGCTGTTGTGAGAGCGGCTACGGAAACTGCTACTGCTACTATCGCTGCTACTTCAGCTACTGGCTGTCGCAGACTACGCTGTTTTGA a S A P S R Q H S R R C L * R * R * * R R * S R * P T A S D A T K L - b P Q R Q V D N T L A D A F D D D D D S D D E V D D R Q R L M R Q N S - c L S A K S T T L S P M P L T M T M I A T M K S M T D S V * C D K T - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d E E A G L R C C E R R H R Q R H R H Y R R H L R H G V A D S A V F S - e R L A L D V V S E G I G K V I V I I A V I F D I V S L T Q H S L V - f G * R W T S L V R A S A K S S S S S L S S S T S S R C R R I R C F - BsaXI Pfl1108I | | CGACCCCTTCGTTCGACACGACAAATGCGACATCGACTCCTGCTCAACCGGCTGTTCCGGCACCAACGCCATCTGCATCAAGATCAACAAGAGTCGTAGG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCTGGGGAAGCAAGCTGTGCTGTTTACGCTGTAGCTGAGGACGAGTTGGCCGACAAGGCCGTGGTTGCGGTAGACGTAGTTCTAGTTGTTCTCAGCATCC a D P F V R H D K C D I D S C S T G C S G T N A I C I K I N K S R R - b T P S F D T T N A T S T P A Q P A V P A P T P S A S R S T R V V G - c R P L R S T R Q M R H R L L L N R L F R H Q R H L H Q D Q Q E S * E - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S G K T R C S L H S M S E Q E V P Q E P V L A M Q M L I L L L R L - e R G R R E V R C I R C R S R S L R S N R C W R W R C * S * C S D Y - f E V G E N S V V F A V D V G A * G A T G A G V G D A D L D V L T T P - Bpu10I BseRI BspGI BcgI | | | | AGGAGGCTCAGGATCGGACGGTGTTTTTGCCAATTTGTCTGCGCGTCCAGAGCGAGGCGGCAACAGTGATCCCGAGAAAGATGAACTACCACCATCTTAC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TCCTCCGAGTCCTAGCCTGCCACAAAAACGGTTAAACAGACGCGCAGGTCTCGCTCCGCCGTTGTCACTAGGGCTCTTTCTACTTGATGGTGGTAGAATG a R R L R I G R C F C Q F V C A S R A R R Q Q * S R E R * T T T I L R - b G G S G S D G V F A N L S A R P E R G G N S D P E K D E L P P S Y - c E A Q D R T V F L P I C L R V Q S E A A T V I P R K M N Y H H L T - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d L L S L I P R H K Q W N T Q A D L A L R C C H D R S L H V V V M K - e S S A * S R V T N K G I Q R R T W L S A A V T I G L F I F * W W R V - f P P E P D S P T K A L K D A R G S R P P L L S G S F S S S G G D * - BfiI Tth111I BcgI BsmBI | EciI HgiEII | SphI | | | | | | | GAACAAGCTGCGGCTGATGCTGCTCCCCCATACTGGGAGACGACAATTCTCGCTCCTGGCATGGGCGGACCCGACGAGGTCTACATTGACGGCATGCCAG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CTTGTTCGACGCCGACTACGACGAGGGGGTATGACCCTCTGCTGTTAAGAGCGAGGACCGTACCCGCCTGGGCTGCTCCAGATGTAACTGCCGTACGGTC a T S C G * C C S P I L G D D N S R S W H G R T R R G L H * R H A S - b E Q A A A D A A P P Y W E T T I L A P G M G G P D E V Y I D G M P V - c N K L R L M L L P H T G R R Q F S L L A W A D P T R S T L T A C Q - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d R V L Q P Q H Q E G M S P S S L E R E Q C P R V R R P R C Q R C A L - e F L S R S I S S G W V P L R C N E S R A H A S G V L D V N V A H W - f S C A A A S A A G G Y Q S V V I R A G P M P P G S S T * M S P M G - TCCGATCATTCTTCTCATTCGTCTGGAACG 801 ---------+---------+---------+ 830 AGGCTAGTAAGAAGAGTAAGCAGACCTTGC a P I I L L I R L E - b R S F F S F V W N - c S D H S S H S S G T - 801 ---------+---------+---------+ 830 d G I M R R M R R S R - e D S * E E * E D P V - f T R D N K E N T Q F - Enzymes that do cut: AlwNI BamHI Bce83I BcgI BfiI BpmI Bpu10I BsaXI BsbI BseRI BsmBI BspEI BspGI BssSI DrdI EciI EcoRI HgiEII Pfl1108I SalI SphI Tth111I XhoI Enzymes that do not cut: AatII AceIII AflII AhdI ApaI ApaBI ApaLI AscI AvrII BbsI BclI BglI BglII BplI Bpu1102I BsaI BsaBI BsgI BsiWI BsmI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdII EagI EarI Eco47III Eco57I EcoNI EcoRV FseI FspI HindIII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XbaI XcmI XmnI