(Linear) MAP of: ./Contig015.seq check: 4921 from: 1 to: 718 Fgr.fasta.screen.Contig15 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. EcoRI BssSI Tth111I MfeI BplI | | | | | GAATTCGGCACGAGGACAACGTCAATTGAAAGCCGAAGCCTTGCAATCATGGCCGCCCTCCGATCTCAGAGTGCGGCTCGTATGCTGCGAAGCGCCGCTG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCTGTTGCAGTTAACTTTCGGCTTCGGAACGTTAGTACCGGCGGGAGGCTAGAGTCTCACGCCGAGCATACGACGCTTCGCGGCGAC a E F G T R T T S I E S R S L A I M A A L R S Q S A A R M L R S A A V - b N S A R G Q R Q L K A E A L Q S W P P S D L R V R L V C C E A P L - c I R H E D N V N * K P K P C N H G R P P I S E C G S Y A A K R R C - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d I R C S S L T L Q F G F G Q L * P R G G I E S H P E Y A A F R R Q - e F E A R P C R * N F A S A K C D H G G E S R L T R S T H Q S A G S - f N P V L V V D I S L R L R A I M A A R R D * L A A R I S R L A A - XhoI BplI EciI Bpu10I AlwNI KpnI | | | | | | TTCCTCGAGTCGCCCTCTCCGCCGCCCCCCGACGATTCCAGAGCAACATCACCTCAGCTACTGGTACCATCACTGGCCCCGTTGCCAACGAGCCCGACTA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 AAGGAGCTCAGCGGGAGAGGCGGCGGGGGGCTGCTAAGGTCTCGTTGTAGTGGAGTCGATGACCATGGTAGTGACCGGGGCAACGGTTGCTCGGGCTGAT a P R V A L S A A P R R F Q S N I T S A T G T I T G P V A N E P D Y - b F L E S P S P P P P D D S R A T S P Q L L V P S L A P L P T S P T T - c S S S R P L R R P P T I P E Q H H L S Y W Y H H W P R C Q R A R L - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d E E L R G R R R G G V I G S C C * R L * Q Y W * Q G R Q W R A R S - e N R S D G E G G G G S S E L A V D G * S S T G D S A G N G V L G V - f T G R T A R E A A G R R N W L L M V E A V P V M V P G T A L S G S * - BglI EarI BpmI | | | CAACATCCAGGCCGACAAGGCTACCTCCACCTACACCCCCGTCCCTCGATCAATCCAGGATGGTAGCGAAGAGATCCTTCCCGCAGCCATTATGTCAGGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GTTGTAGGTCCGGCTGTTCCGATGGAGGTGGATGTGGGGGCAGGGAGCTAGTTAGGTCCTACCATCGCTTCTCTAGGAAGGGCGTCGGTAATACAGTCCG a N I Q A D K A T S T Y T P V P R S I Q D G S E E I L P A A I M S G - b T S R P T R L P P P T P P S L D Q S R M V A K R S F P Q P L C Q A - c Q H P G R Q G Y L H L H P R P S I N P G W * R R D P S R S H Y V R R - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d C C G P R C P * R W R C G R G E I L G P H Y R L S G E R L W * T L - e V V D L G V L S G G G V G G D R S * D L I T A F L D K G C G N H * A - f L M W A S L A V E V * V G T G R D I W S P L S S I R G A A M I D P - SacI SalI | | GCTCCTATGGAGCTCCAGGCCCGAACAGTTCGCATCTACCAGGAAGCCAAGCCCGCTACACAGTCCGGTGACTGGCGCGGTCGACGCTGGCGAATGGATT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CGAGGATACCTCGAGGTCCGGGCTTGTCAAGCGTAGATGGTCCTTCGGTTCGGGCGATGTGTCAGGCCACTGACCGCGCCAGCTGCGACCGCTTACCTAA a A P M E L Q A R T V R I Y Q E A K P A T Q S G D W R G R R W R M D W - b L L W S S R P E Q F A S T R K P S P L H S P V T G A V D A G E W I - c S Y G A P G P N S S H L P G S Q A R Y T V R * L A R S T L A N G L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R E * P A G P G F L E C R G P L W A R * V T R H S A R D V S A F P N - e S R H L E L G S C N A D V L F G L G S C L G T V P A T S A P S H I - f A G I S S W A R V T R M * W S A L G A V C D P S Q R P R R Q R I S - NspV | GGGACATTCTCCCCAAGGGACACCGATGGGAGAACCCTCTGATGGGCTGGCAATCATCGGGTGACTTCATGCAGGGAACCCACATCAACTTCGAAAGCAA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CCCTGTAAGAGGGGTTCCCTGTGGCTACCCTCTTGGGAGACTACCCGACCGTTAGTAGCCCACTGAAGTACGTCCCTTGGGTGTAGTTGAAGCTTTCGTT a D I L P K G H R W E N P L M G W Q S S G D F M Q G T H I N F E S K - b G T F S P R D T D G R T L * W A G N H R V T S C R E P T S T S K A R - c G H S P Q G T P M G E P S D G L A I I G * L H A G N P H Q L R K Q - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d P C E G W P V G I P S G E S P S A I M P H S * A P F G C * S R F C - e P V N E G L S V S P L V R Q H A P L * R T V E H L S G V D V E F A - f Q S M R G L P C R H S F G R I P Q C D D P S K M C P V W M L K S L L - StuI BplI BglI | | | | GGAGGACGCCATTCACTTTGCTGAGAAGCAGGGTTATGAATACTTTGTTCAGGAGCCAAACTCTCGCAAGTTTGCCCCCAAGGCCTACGCCAACAACTTC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CCTCCTGCGGTAAGTGAAACGACTCTTCGTCCCAATACTTATGAAACAAGTCCTCGGTTTGAGAGCGTTCAAACGGGGGTTCCGGATGCGGTTGTTGAAG a E D A I H F A E K Q G Y E Y F V Q E P N S R K F A P K A Y A N N F - b R T P F T L L R S R V M N T L F R S Q T L A S L P P R P T P T T S - c G G R H S L C * E A G L * I L C S G A K L S Q V C P Q G L R Q Q L P - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d P P R W E S Q Q S A P N H I S Q E P A L S E C T Q G W P R R W C S - e L L V G N V K S L L L T I F V K N L L W V R A L K G G L G V G V V E - f S S A M * K A S F C P * S Y K T * S G F E R L N A G L A * A L L K - Bce83I EciI | | CTGTACTCCGCCAGGAAGCTCAAGCACATCAGGACGAAATAGACGGCTTAGACAGCCTGCTCTTATGTAAATATGTTTATTTGAAAAACTCATTTTCGTG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GACATGAGGCGGTCCTTCGAGTTCGTGTAGTCCTGCTTTATCTGCCGAATCTGTCGGACGAGAATACATTTATACAAATAAACTTTTTGAGTAAAAGCAC a L Y S A R K L K H I R T K * T A * T A C S Y V N M F I * K T H F R V - b C T P P G S S S T S G R N R R L R Q P A L M * I C L F E K L I F V - c V L R Q E A Q A H Q D E I D G L D S L L L C K Y V Y L K N S F S C - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d G T S R W S A * A C * S S I S P K S L R S K H L Y T * K F F E N E H - e Q V G G P L E L V D P R F L R S L C G A R I Y I H K N S F S M K T - f R Y E A L F S L C M L V F Y V A * V A Q E * T F I N I Q F V * K R - TGAAAAAAAAAAAAAAAA 701 ---------+-------- 718 ACTTTTTTTTTTTTTTTT a K K K K K - b * K K K K K - c E K K K K - 701 ---------+-------- 718 d S F F F F F - e H F F F F F - f T F F F F F - Enzymes that do cut: AlwNI Bce83I BglI BplI BpmI Bpu10I BssSI EarI EciI EcoRI KpnI MfeI NspV SacI SalI StuI Tth111I XhoI Enzymes that do not cut: AatII AceIII AflII AhdI ApaI ApaBI ApaLI AscI AvrII BamHI BbsI BcgI BclI BfiI BglII Bpu1102I BsaI BsaBI BsaXI BsbI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EagI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacII SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI SwaI VspI XbaI XcmI XmnI