(Linear) MAP of: ./Contig016.seq check: 5109 from: 1 to: 953 Fgr.fasta.screen.Contig16 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * March 20, 2001 16:46 .. Bsu36I EcoRI BssSI BcgI BcgI | | | | | | GAATTCGGCACGAGGCTAACCCGAACGATTCAAGATGCCTCCCAACAAATCCGGCAAGAAGGTCGCTCCCGCCCCTTTCCCTCAGGGTAAGGCTGGCAAG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CTTAAGCCGTGCTCCGATTGGGCTTGCTAAGTTCTACGGAGGGTTGTTTAGGCCGTTCTTCCAGCGAGGGCGGGGAAAGGGAGTCCCATTCCGACCGTTC a E F G T R L T R T I Q D A S Q Q I R Q E G R S R P F P S G * G W Q E - b N S A R G * P E R F K M P P N K S G K K V A P A P F P Q G K A G K - c I R H E A N P N D S R C L P T N P A R R S L P P L S L R V R L A R - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d N P V L S V R V I * S A E W C I R C S P R E R G K G E P Y P Q C - e I R C S A L G F S E L H R G V F G A L L D S G G R E R L T L S A L - f F E A R P * G S R N L I G G L L D P L F T A G A G K G * P L A P L - BseRI XhoI Eco57I | | | AAGGCCGCTAAGAACCCTCTCCTCGAGAAGCGACCCCGCAACTACGGTATCGGCCAGGACATCCAGCCCAAGCGAAATGTCTCTCGCATGGTCAAGTGGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TTCCGGCGATTCTTGGGAGAGGAGCTCTTCGCTGGGGCGTTGATGCCATAGCCGGTCCTGTAGGTCGGGTTCGCTTTACAGAGAGCGTACCAGTTCACCG a G R * E P S P R E A T P Q L R Y R P G H P A Q A K C L S H G Q V A - b K A A K N P L L E K R P R N Y G I G Q D I Q P K R N V S R M V K W P - c R P L R T L S S R S D P A T T V S A R T S S P S E M S L A W S S G - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S P R * S G E G R S A V G C S R Y R G P C G A W A F H R E C P * T A - e L G S L V R E E L L S G A V V T D A L V D L G L S I D R A H D L P - f F A A L F G R R S F R G R L * P I P W S M W G L R F T E R M T L H - BbsI Eco57I Eco57I BsbI | | | | CCGAGTATGTCCGTCTTCAGCGCCAGAAGAAGATCCTTCAGATGCGCCTGAAGGTTCCCCCGGCTCTCGCTCAGTTCCAGCACGTCCTCGACCGCAACAC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GGCTCATACAGGCAGAAGTCGCGGTCTTCTTCTAGGAAGTCTACGCGGACTTCCAAGGGGGCCGAGAGCGAGTCAAGGTCGTGCAGGAGCTGGCGTTGTG a R V C P S S A P E E D P S D A P E G S P G S R S V P A R P R P Q H - b E Y V R L Q R Q K K I L Q M R L K V P P A L A Q F Q H V L D R N T - c P S M S V F S A R R R S F R C A * R F P R L S L S S S T S S T A T L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d R T H G D E A G S S S G E S A G S P E G P E R E T G A R G R G C C - e G L I D T K L A L L L D K L H A Q L N G R S E S L E L V D E V A V - f G S Y T R R * R W F F I R * I R R F T G G A R A * N W C T R S R L V - BseRI EcoNI BseRI BsaI BpmI | BsmBI | | | | | | | TGCTGCCCAGGCTTTCAAGCTCCTCAACAAGTACCGACCTGAGACCAAGGCCGAGAAGAAGGAGCGTCTCCTCCAGGAGGCTACCGCCGTCAAGGAGGGC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 ACGACGGGTCCGAAAGTTCGAGGAGTTGTTCATGGCTGGACTCTGGTTCCGGCTCTTCTTCCTCGCAGAGGAGGTCCTCCGATGGCGGCAGTTCCTCCCG a C C P G F Q A P Q Q V P T * D Q G R E E G A S P P G G Y R R Q G G Q - b A A Q A F K L L N K Y R P E T K A E K K E R L L Q E A T A V K E G - c L P R L S S S S T S T D L R P R P R R R S V S S R R L P P S R R A - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d Q Q G P K * A G * C T G V Q S W P R S S P A D G G P P * R R * P P - e S S G L S E L E E V L V S R L G L G L L L L T E E L L S G G D L L A - f A A W A K L S R L L Y R G S V L A S F F S R R R W S A V A T L S P - BplI | AAGAAGAAGGAGGATGTCTCCAAGAAGCCCTACACCGTCAAGTACGGCCTCAACCACGTTGTCGGCCTGATTGAGAACAAGAAGGCTTCTCTCGTCCTCA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TTCTTCTTCCTCCTACAGAGGTTCTTCGGGATGTGGCAGTTCATGCCGGAGTTGGTGCAACAGCCGGACTAACTCTTGTTCTTCCGAAGAGAGCAGGAGT a E E G G C L Q E A L H R Q V R P Q P R C R P D * E Q E G F S R P H - b K K K E D V S K K P Y T V K Y G L N H V V G L I E N K K A S L V L I - c R R R R M S P R S P T P S S T A S T T L S A * L R T R R L L S S S - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d C S S P P H R W S A R C R * T R G * G R Q R G S Q S C S P K E R G * - e L L L L I D G L L G V G D L V A E V V N D A Q N L V L L S R E D E - f L F F S S T E L F G * V T L Y P R L W T T P R I S F L F A E R T R - SacI AatII BbsI | BsaBI | | | | TCCCCAACGACGTCGAGCCCATTGAGCTCGTTGTCTTCCTTCCTTCTCTCTGCAAGAAGATGGGTATCCCCTACGCCATTGTCAAGGGCAAGGCCCGTCT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AGGGGTTGCTGCAGCTCGGGTAACTCGAGCAACAGAAGGAAGGAAGAGAGACGTTCTTCTACCCATAGGGGATGCGGTAACAGTTCCCGTTCCGGGCAGA a P Q R R R A H * A R C L P S F S L Q E D G Y P L R H C Q G Q G P S - b P N D V E P I E L V V F L P S L C K K M G I P Y A I V K G K A R L - c S P T T S S P L S S L S S F L L S A R R W V S P T P L S R A R P V S - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d G W R R R A W Q A R Q R G E K E R C S S P Y G R R W Q * P C P G D - e D G V V D L G N L E N D E K R R E A L L H T D G V G N D L A L G T - f M G L S T S G M S S T T K R G E R Q L F I P I G * A M T L P L A R R - BsrBI BsmBI BbsI BplI | SacI | | | | | CGGAACGGTCGTCCACAAGAAGACCGCTGCTGTCCTCGCCATCACCGAGGTCCGCTCCGAGGACAAGACTGAGCTCTCCAAGCTCATCTCCGCTGTCAAG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GCCTTGCCAGCAGGTGTTCTTCTGGCGACGACAGGAGCGGTAGTGGCTCCAGGCGAGGCTCCTGTTCTGACTCGAGAGGTTCGAGTAGAGGCGACAGTTC a R N G R P Q E D R C C P R H H R G P L R G Q D * A L Q A H L R C Q G - b G T V V H K K T A A V L A I T E V R S E D K T E L S K L I S A V K - c E R S S T R R P L L S S P S P R S A P R T R L S S P S S S P L S R - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R F P R G C S S R Q Q G R W * R P G S R P C S Q A R W A * R R Q * - e E S R D D V L L G S S D E G D G L D A G L V L S L E G L E D G S D L - f P V T T W L F V A A T R A M V S T R E S S L V S S E L S M E A T L - BstEII Bce83I BsaBI XhoI | | | | GATGGTTACCTTGAGAAGCACGACCAGGCCCGCCGACAGTGGGGTGGTGGTATCATGGGTGCCAAGGCTCAGATGAAGATCATCAAGAAGCAGAAGGCTC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CTACCAATGGAACTCTTCGTGCTGGTCCGGGCGGCTGTCACCCCACCACCATAGTACCCACGGTTCCGAGTCTACTTCTAGTAGTTCTTCGTCTTCCGAG a W L P * E A R P G P P T V G W W Y H G C Q G S D E D H Q E A E G S - b D G Y L E K H D Q A R R Q W G G G I M G A K A Q M K I I K K Q K A L - c M V T L R S T T R P A D S G V V V S W V P R L R * R S S R S R R L - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d P H N G Q S A R G P G G V T P H H Y * P H W P E S S S * * S A S P E - e I T V K L L V V L G A S L P T T T D H T G L S L H L D D L L L L S - f S P * R S F C S W A R R C H P P P I M P A L A * I F I M L F C F A - NsiI BglII BsrDI | BsbI | | | | TCGAGGCTGCTACCAAGATCTAAGTCTAATTTGTTTATACCCCCTCAAATGCATTGCGATTATGGGATCAACGGTGTTGCACGGTTCACGGCATGGAAAA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 AGCTCCGACGATGGTTCTAGATTCAGATTAAACAAATATGGGGGAGTTTACGTAACGCTAATACCCTAGTTGCCACAACGTGCCAAGTGCCGTACCTTTT a R G C Y Q D L S L I C L Y P L K C I A I M G S T V L H G S R H G K - b E A A T K I * V * F V Y T P S N A L R L W D Q R C C T V H G M E N - c S R L L P R S K S N L F I P P Q M H C D Y G I N G V A R F T A W K M - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d R P Q * W S R L R I Q K Y G R L H M A I I P D V T N C P E R C P F - e E L S S G L D L D L K N I G G * I C Q S * P I L P T A R N V A H F - f R S A A V L I * T * N T * V G E F A N R N H S * R H Q V T * P M S F - TGAATGATTTTTCTCGGGTTNAAAAAAAAAGGGAAAAAAATAAAAAAAAAAAA 901 ---------+---------+---------+---------+---------+--- 953 ACTTACTAAAAAGAGCCCAANTTTTTTTTTCCCTTTTTTTATTTTTTTTTTTT a * M I F L G ? K K K G K K I K K K - b E * F F S G ? K K K G K K * K K K - c N D F S R V ? K K R E K N K K K K - 901 ---------+---------+---------+---------+---------+--- 953 d H I I K R P N ? F F P F F I F F F F - e I F S K E R T ? F F L S F F L F F F - f S H N K E P ? F F F P F F Y F F F - Enzymes that do cut: AatII BbsI Bce83I BcgI BglII BplI BpmI BsaI BsaBI BsbI BseRI BsmBI BsrBI BsrDI BssSI BstEII Bsu36I Eco57I EcoNI EcoRI NsiI SacI XhoI Enzymes that do not cut: AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BclI BfiI BglI Bpu10I Bpu1102I BsaXI BsgI BsiWI BsmI BspEI BspGI BspLU11I BspMI BsrGI BssHII Bst1107I BstXI ClaI DraI DraIII DrdI DrdII EagI EarI EciI Eco47III EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XmnI